RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 SYNMO15061 1565 aa29.39■■■□□ 2.3
UBE2D3-216ENST00000503742 AGLP35573 1532 aa29.37■■■□□ 2.29
UBE2D3-216ENST00000503742 ADGRF5Q8IZF2 1346 aa29.37■■■□□ 2.29
UBE2D3-216ENST00000503742 DISP3Q9P2K9 1392 aa29.37■■■□□ 2.29
UBE2D3-216ENST00000503742 CCDC184Q52MB2 194 aa29.37■■■□□ 2.29
UBE2D3-216ENST00000503742 PPLO60437 1756 aa29.36■■■□□ 2.29
UBE2D3-216ENST00000503742 TMF1P82094 1093 aa29.32■■■□□ 2.28
UBE2D3-216ENST00000503742 RPGRIP1LQ68CZ1 1315 aa29.31■■■□□ 2.28
UBE2D3-216ENST00000503742 CFAP70Q5T0N1 1121 aa29.3■■■□□ 2.28
UBE2D3-216ENST00000503742 CHGAP10645 457 aaKnown RBP29.29■■■□□ 2.28
UBE2D3-216ENST00000503742 PREX1Q8TCU6 1659 aa29.29■■■□□ 2.28
UBE2D3-216ENST00000503742 MRS2Q9HD23 443 aa29.27■■■□□ 2.28
UBE2D3-216ENST00000503742 ARHGEF40Q8TER5 1519 aa29.26■■■□□ 2.28
UBE2D3-216ENST00000503742 PPP6R1Q9UPN7 881 aa29.26■■■□□ 2.28
UBE2D3-216ENST00000503742 PIK3C2GO75747 1445 aa29.26■■■□□ 2.27
UBE2D3-216ENST00000503742 SETBP1Q9Y6X0 1596 aa29.26■■■□□ 2.27
UBE2D3-216ENST00000503742 EIF3AQ14152 1382 aaKnown RBP29.26■■■□□ 2.27
UBE2D3-216ENST00000503742 SLC52A1Q9NWF4 448 aa29.24■■■□□ 2.27
UBE2D3-216ENST00000503742 KTN1Q86UP2 1357 aaKnown RBP29.24■■■□□ 2.27
UBE2D3-216ENST00000503742 NEXMIFQ5QGS0 1516 aa29.22■■■□□ 2.27
UBE2D3-216ENST00000503742 PER1O15534 1290 aaPredicted RBP29.21■■■□□ 2.27
UBE2D3-216ENST00000503742 IDI1Q13907 227 aa29.21■■■□□ 2.27
UBE2D3-216ENST00000503742 C14orf93Q9H972 538 aaKnown RBP29.19■■■□□ 2.26
UBE2D3-216ENST00000503742 MYO3AQ8NEV4 1616 aa29.18■■■□□ 2.26
UBE2D3-216ENST00000503742 ERVK-7P63135 1459 aa29.17■■■□□ 2.26
UBE2D3-216ENST00000503742 HNRNPUQ00839 825 aaKnown RBP eCLIP29.17■■■□□ 2.26
UBE2D3-216ENST00000503742 RALBP1Q15311 655 aa29.17■■■□□ 2.26
UBE2D3-216ENST00000503742 ADGRB1O14514 1584 aa29.16■■■□□ 2.26
UBE2D3-216ENST00000503742 TMEM131LA2VDJ0 1609 aa29.16■■■□□ 2.26
UBE2D3-216ENST00000503742 CLTCQ00610 1675 aaKnown RBP29.16■■■□□ 2.26
UBE2D3-216ENST00000503742 CDCA8Q53HL2 280 aa29.15■■■□□ 2.26
UBE2D3-216ENST00000503742 MYO5BQ9ULV0 1848 aa29.14■■■□□ 2.25
UBE2D3-216ENST00000503742 ZFYVE9O95405 1425 aa29.13■■■□□ 2.25
UBE2D3-216ENST00000503742 SLC24A1O60721 1099 aa29.13■■■□□ 2.25
UBE2D3-216ENST00000503742 CNGB1Q14028 1251 aaPredicted RBP29.13■■■□□ 2.25
UBE2D3-216ENST00000503742 FAM9BQ8IZU0 186 aa29.13■■■□□ 2.25
UBE2D3-216ENST00000503742 PANK3Q9H999 370 aa29.13■■■□□ 2.25
UBE2D3-216ENST00000503742 PARD3Q8TEW0 1356 aa29.12■■■□□ 2.25
UBE2D3-216ENST00000503742 VGFO15240 615 aaPredicted RBP29.12■■■□□ 2.25
UBE2D3-216ENST00000503742 MYBBP1AQ9BQG0 1328 aaKnown RBP29.11■■■□□ 2.25
UBE2D3-216ENST00000503742 FBXO31Q5XUX0 539 aaPredicted RBP29.11■■■□□ 2.25
UBE2D3-216ENST00000503742 SBNO2Q9Y2G9 1366 aa29.1■■■□□ 2.25
UBE2D3-216ENST00000503742 KDM5AP29375 1690 aaKnown RBP29.08■■■□□ 2.25
UBE2D3-216ENST00000503742 SPATA31D1Q6ZQQ2 1576 aa29.08■■■□□ 2.25
UBE2D3-216ENST00000503742 MYOM1P52179 1685 aa29.08■■■□□ 2.25
UBE2D3-216ENST00000503742 BRD4O60885 1362 aaPredicted RBP29.07■■■□□ 2.24
UBE2D3-216ENST00000503742 PNISRQ8TF01 805 aaKnown RBP29.02■■■□□ 2.24
UBE2D3-216ENST00000503742 NUTM2DQ5VT03 806 aaPredicted RBP29.02■■■□□ 2.24
UBE2D3-216ENST00000503742 CENPJQ9HC77 1338 aaPredicted RBP29.02■■■□□ 2.24
UBE2D3-216ENST00000503742 TMC1Q8TDI8 760 aa29.01■■■□□ 2.23
UBE2D3-216ENST00000503742 MLECQ14165 292 aa29.01■■■□□ 2.23
UBE2D3-216ENST00000503742 TMEM132EQ6IEE7 984 aa29■■■□□ 2.23
UBE2D3-216ENST00000503742 QRICH2Q9H0J4 1663 aa28.99■■■□□ 2.23
UBE2D3-216ENST00000503742 TRAK1Q9UPV9 953 aa28.99■■■□□ 2.23
UBE2D3-216ENST00000503742 ZBED9Q6R2W3 1325 aa28.99■■■□□ 2.23
UBE2D3-216ENST00000503742 NLRP13Q86W25 1043 aa28.98■■■□□ 2.23
UBE2D3-216ENST00000503742 LRPPRCP42704 1394 aaKnown RBP28.96■■■□□ 2.23
UBE2D3-216ENST00000503742 ARHGEF28Q8N1W1 1705 aaKnown RBP28.95■■■□□ 2.23
UBE2D3-216ENST00000503742 CC2D1BQ5T0F9 858 aaKnown RBP28.95■■■□□ 2.22
UBE2D3-216ENST00000503742 SUPT16HQ9Y5B9 1047 aaKnown RBP28.95■■■□□ 2.22
UBE2D3-216ENST00000503742 ASXL1Q8IXJ9 1541 aa28.94■■■□□ 2.22
UBE2D3-216ENST00000503742 A2ML1A8K2U0 1454 aa28.93■■■□□ 2.22
UBE2D3-216ENST00000503742 ZMYM3Q14202 1370 aa28.93■■■□□ 2.22
UBE2D3-216ENST00000503742 KNSTRNQ9Y448 316 aa28.92■■■□□ 2.22
UBE2D3-216ENST00000503742 AMER1Q5JTC6 1135 aaPredicted RBP28.92■■■□□ 2.22
UBE2D3-216ENST00000503742 NPC1L1Q9UHC9 1359 aa28.9■■■□□ 2.22
UBE2D3-216ENST00000503742 ESF1Q9H501 851 aaKnown RBP28.88■■■□□ 2.21
UBE2D3-216ENST00000503742 STAG3Q9UJ98 1225 aa28.88■■■□□ 2.21
UBE2D3-216ENST00000503742 ALKQ9UM73 1620 aa28.85■■■□□ 2.21
UBE2D3-216ENST00000503742 PUS7Q96PZ0 661 aaKnown RBP28.82■■■□□ 2.2
UBE2D3-216ENST00000503742 RIMS2Q9UQ26 1411 aa28.82■■■□□ 2.2
UBE2D3-216ENST00000503742 TULP4Q9NRJ4 1543 aa28.81■■■□□ 2.2
UBE2D3-216ENST00000503742 YTHDC2Q9H6S0 1430 aaKnown RBP28.79■■■□□ 2.2
UBE2D3-216ENST00000503742 PTPRMP28827 1452 aa28.79■■■□□ 2.2
UBE2D3-216ENST00000503742 CARD14Q9BXL6 1004 aa28.79■■■□□ 2.2
UBE2D3-216ENST00000503742 INSRP06213 1382 aa28.77■■■□□ 2.2
UBE2D3-216ENST00000503742 TNRQ92752 1358 aa28.77■■■□□ 2.2
UBE2D3-216ENST00000503742 EVC2Q86UK5 1308 aa28.76■■■□□ 2.19
UBE2D3-216ENST00000503742 SETD1AO15047 1707 aaKnown RBP28.76■■■□□ 2.19
UBE2D3-216ENST00000503742 PPP2R1AP30153 589 aa28.75■■■□□ 2.19
UBE2D3-216ENST00000503742 FKBP8Q14318 412 aa28.75■■■□□ 2.19
UBE2D3-216ENST00000503742 NEFLP07196 543 aa28.73■■■□□ 2.19
UBE2D3-216ENST00000503742 STK26Q9P289 416 aa28.73■■■□□ 2.19
UBE2D3-216ENST00000503742 SENP3Q9H4L4 574 aaPredicted RBP28.72■■■□□ 2.19
UBE2D3-216ENST00000503742 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.7■■■□□ 2.19
UBE2D3-216ENST00000503742 SLC12A5Q9H2X9 1139 aa28.7■■■□□ 2.19
UBE2D3-216ENST00000503742 NRXN3Q9Y4C0 1643 aa28.7■■■□□ 2.18
UBE2D3-216ENST00000503742 SMG6Q86US8 1419 aaKnown RBP28.7■■■□□ 2.18
UBE2D3-216ENST00000503742 UBR1Q8IWV7 1749 aa28.69■■■□□ 2.18
UBE2D3-216ENST00000503742 TRHP20396 242 aaPredicted RBP28.69■■■□□ 2.18
UBE2D3-216ENST00000503742 DLC1Q96QB1 1528 aa28.68■■■□□ 2.18
UBE2D3-216ENST00000503742 USP32Q8NFA0 1604 aa28.67■■■□□ 2.18
UBE2D3-216ENST00000503742 BLMP54132 1417 aaPredicted RBP28.67■■■□□ 2.18
UBE2D3-216ENST00000503742 PRAM1Q96QH2 718 aa28.66■■■□□ 2.18
UBE2D3-216ENST00000503742 NSD3Q9BZ95 1437 aa28.66■■■□□ 2.18
UBE2D3-216ENST00000503742 SAFB2Q14151 953 aaKnown RBP eCLIP28.65■■■□□ 2.18
UBE2D3-216ENST00000503742 ANKRD36BQ8N2N9 1353 aa28.62■■■□□ 2.17
UBE2D3-216ENST00000503742 CABP2Q9NPB3 220 aa28.62■■■□□ 2.17
UBE2D3-216ENST00000503742 POGKQ9P215 609 aa28.62■■■□□ 2.17
UBE2D3-216ENST00000503742 NLRP1Q9C000 1473 aa28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms