RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 KIF1BO60333 1816 aa13.19□□□□□ -0.3
CLIP1-204ENST00000501271 INSRP06213 1382 aa13.19□□□□□ -0.3
CLIP1-204ENST00000501271 EFCAB6Q5THR3 1501 aa13.19□□□□□ -0.3
CLIP1-204ENST00000501271 MROH2AA6NES4 1674 aa13.19□□□□□ -0.3
CLIP1-204ENST00000501271 IFT172Q9UG01 1749 aa13.19□□□□□ -0.3
CLIP1-204ENST00000501271 ABCA6Q8N139 1617 aa13.18□□□□□ -0.3
CLIP1-204ENST00000501271 MAP3K4Q9Y6R4 1608 aa13.18□□□□□ -0.3
CLIP1-204ENST00000501271 PPRC1Q5VV67 1664 aaKnown RBP13.18□□□□□ -0.3
CLIP1-204ENST00000501271 RRP1P56182 461 aaKnown RBP13.18□□□□□ -0.3
CLIP1-204ENST00000501271 MYT1LQ9UL68 1186 aa13.18□□□□□ -0.3
CLIP1-204ENST00000501271 STAC3Q96MF2 364 aa13.18□□□□□ -0.3
CLIP1-204ENST00000501271 PDE3BQ13370 1112 aa13.17□□□□□ -0.3
CLIP1-204ENST00000501271 RCAN3Q9UKA8 241 aa13.17□□□□□ -0.3
CLIP1-204ENST00000501271 KDM5AP29375 1690 aaKnown RBP13.17□□□□□ -0.3
CLIP1-204ENST00000501271 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
CLIP1-204ENST00000501271 MYOM2P54296 1465 aa13.16□□□□□ -0.3
CLIP1-204ENST00000501271 AMER1Q5JTC6 1135 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-204ENST00000501271 KNSTRNQ9Y448 316 aa13.14□□□□□ -0.31
CLIP1-204ENST00000501271 EIF3AQ14152 1382 aaKnown RBP13.14□□□□□ -0.31
CLIP1-204ENST00000501271 ASXL1Q8IXJ9 1541 aa13.14□□□□□ -0.31
CLIP1-204ENST00000501271 ZNF518AQ6AHZ1 1483 aa13.14□□□□□ -0.31
CLIP1-204ENST00000501271 PLPPR3Q6T4P5 718 aa13.14□□□□□ -0.31
CLIP1-204ENST00000501271 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
CLIP1-204ENST00000501271 LMTK2Q8IWU2 1503 aa13.13□□□□□ -0.31
CLIP1-204ENST00000501271 CDCA8Q53HL2 280 aa13.13□□□□□ -0.31
CLIP1-204ENST00000501271 EXOC6Q8TAG9 804 aa13.13□□□□□ -0.31
CLIP1-204ENST00000501271 ADGRF5Q8IZF2 1346 aa13.12□□□□□ -0.31
CLIP1-204ENST00000501271 CFAP70Q5T0N1 1121 aa13.12□□□□□ -0.31
CLIP1-204ENST00000501271 ADAMTS8Q9UP79 889 aa13.12□□□□□ -0.31
CLIP1-204ENST00000501271 ERVK-7P63135 1459 aa13.12□□□□□ -0.31
CLIP1-204ENST00000501271 CFAP65Q6ZU64 1925 aaKnown RBP13.11□□□□□ -0.31
CLIP1-204ENST00000501271 FRMPD1Q5SYB0 1578 aa13.11□□□□□ -0.31
CLIP1-204ENST00000501271 ADGRB3O60242 1522 aa13.11□□□□□ -0.31
CLIP1-204ENST00000501271 NRXN1Q9ULB1 1477 aa13.11□□□□□ -0.31
CLIP1-204ENST00000501271 MYO3AQ8NEV4 1616 aa13.11□□□□□ -0.31
CLIP1-204ENST00000501271 CFAP74Q9C0B2 1584 aa13.1□□□□□ -0.31
CLIP1-204ENST00000501271 PIK3C2GO75747 1445 aa13.09□□□□□ -0.31
CLIP1-204ENST00000501271 POGZQ7Z3K3 1410 aa13.09□□□□□ -0.31
CLIP1-204ENST00000501271 PPLO60437 1756 aa13.09□□□□□ -0.31
CLIP1-204ENST00000501271 NPC1L1Q9UHC9 1359 aa13.09□□□□□ -0.31
CLIP1-204ENST00000501271 HECW2Q9P2P5 1572 aa13.08□□□□□ -0.31
CLIP1-204ENST00000501271 PLEKHH1Q9ULM0 1364 aa13.08□□□□□ -0.32
CLIP1-204ENST00000501271 NOS1P29475 1434 aa13.07□□□□□ -0.32
CLIP1-204ENST00000501271 NPATQ14207 1427 aa13.07□□□□□ -0.32
CLIP1-204ENST00000501271 CD109Q6YHK3 1445 aa13.07□□□□□ -0.32
CLIP1-204ENST00000501271 PLIN1O60240 522 aa13.07□□□□□ -0.32
CLIP1-204ENST00000501271 WDR43Q15061 677 aaKnown RBP eCLIP13.07□□□□□ -0.32
CLIP1-204ENST00000501271 ZC3H13Q5T200 1668 aaKnown RBP13.06□□□□□ -0.32
CLIP1-204ENST00000501271 SETBP1Q9Y6X0 1596 aa13.06□□□□□ -0.32
CLIP1-204ENST00000501271 MLH3Q9UHC1 1453 aa13.06□□□□□ -0.32
CLIP1-204ENST00000501271 ERICH6Q7L0X2 663 aa13.05□□□□□ -0.32
CLIP1-204ENST00000501271 NPM1P06748 294 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLIP1-204ENST00000501271 ZNF521Q96K83 1311 aa13.04□□□□□ -0.32
CLIP1-204ENST00000501271 QRICH2Q9H0J4 1663 aa13.04□□□□□ -0.32
CLIP1-204ENST00000501271 SBNO2Q9Y2G9 1366 aa13.04□□□□□ -0.32
CLIP1-204ENST00000501271 SIGLEC1Q9BZZ2 1709 aa13.03□□□□□ -0.32
CLIP1-204ENST00000501271 CARD14Q9BXL6 1004 aa13.03□□□□□ -0.32
CLIP1-204ENST00000501271 ABCC3O15438 1527 aa13.03□□□□□ -0.32
CLIP1-204ENST00000501271 CHGAP10645 457 aaKnown RBP13.03□□□□□ -0.32
CLIP1-204ENST00000501271 CAMSAP1Q5T5Y3 1602 aa13.03□□□□□ -0.32
CLIP1-204ENST00000501271 ADGRB1O14514 1584 aa13.02□□□□□ -0.32
CLIP1-204ENST00000501271 DUSP27Q5VZP5 1158 aa13.02□□□□□ -0.32
CLIP1-204ENST00000501271 GGT6Q6P531 493 aa13.02□□□□□ -0.32
CLIP1-204ENST00000501271 CRBNQ96SW2 442 aa13.02□□□□□ -0.33
CLIP1-204ENST00000501271 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
CLIP1-204ENST00000501271 CCDC146Q8IYE0 955 aa13.01□□□□□ -0.33
CLIP1-204ENST00000501271 CENPJQ9HC77 1338 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-204ENST00000501271 C20orf194Q5TEA3 1177 aa13□□□□□ -0.33
CLIP1-204ENST00000501271 GOLGA2Q08379 1002 aa12.99□□□□□ -0.33
CLIP1-204ENST00000501271 PIK3C2BO00750 1634 aa12.99□□□□□ -0.33
CLIP1-204ENST00000501271 TRAK1Q9UPV9 953 aa12.99□□□□□ -0.33
CLIP1-204ENST00000501271 DIP2CQ9Y2E4 1556 aa12.99□□□□□ -0.33
CLIP1-204ENST00000501271 C14orf93Q9H972 538 aaKnown RBP12.98□□□□□ -0.33
CLIP1-204ENST00000501271 NOP58Q9Y2X3 529 aaKnown RBP12.98□□□□□ -0.33
CLIP1-204ENST00000501271 TCERG1O14776 1098 aaKnown RBP12.98□□□□□ -0.33
CLIP1-204ENST00000501271 GLI2P10070 1586 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 SHPRHQ149N8 1683 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 PAK3O75914 559 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-204ENST00000501271 NEO1Q92859 1461 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 RAPGEF3O95398 923 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 ANP32AP39687 249 aaKnown RBP12.97□□□□□ -0.33
CLIP1-204ENST00000501271 SLFN5Q08AF3 891 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 TMEM132EQ6IEE7 984 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 NSD3Q9BZ95 1437 aa12.97□□□□□ -0.33
CLIP1-204ENST00000501271 RICTORQ6R327 1708 aa12.96□□□□□ -0.33
CLIP1-204ENST00000501271 ARHGEF28Q8N1W1 1705 aaKnown RBP12.96□□□□□ -0.33
CLIP1-204ENST00000501271 APAF1O14727 1248 aa12.96□□□□□ -0.33
CLIP1-204ENST00000501271 NEXMIFQ5QGS0 1516 aa12.96□□□□□ -0.33
CLIP1-204ENST00000501271 SPINK5Q9NQ38 1064 aaPredicted RBP12.96□□□□□ -0.34
CLIP1-204ENST00000501271 TRMT2AQ8IZ69 625 aaKnown RBP12.95□□□□□ -0.34
CLIP1-204ENST00000501271 IPO9Q96P70 1041 aaKnown RBP12.95□□□□□ -0.34
CLIP1-204ENST00000501271 RPGRIP1LQ68CZ1 1315 aa12.95□□□□□ -0.34
CLIP1-204ENST00000501271 USP32Q8NFA0 1604 aa12.95□□□□□ -0.34
CLIP1-204ENST00000501271 SKAP1Q86WV1 359 aa12.94□□□□□ -0.34
CLIP1-204ENST00000501271 POLR3AO14802 1390 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-204ENST00000501271 NKTRP30414 1462 aaKnown RBP12.93□□□□□ -0.34
CLIP1-204ENST00000501271 SLC12A5Q9H2X9 1139 aa12.93□□□□□ -0.34
CLIP1-204ENST00000501271 MYO5BQ9ULV0 1848 aa12.93□□□□□ -0.34
CLIP1-204ENST00000501271 PDE4AP27815 886 aa12.93□□□□□ -0.34
CLIP1-204ENST00000501271 NUTM2DQ5VT03 806 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms