RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 TBC1D2BQ9UPU7 963 aa9.38□□□□□ -0.91
BRCA1-224ENST00000497488 RBM47A0AV96 593 aaKnown RBP9.37□□□□□ -0.91
BRCA1-224ENST00000497488 TBC1D2Q9BYX2 928 aa9.37□□□□□ -0.91
BRCA1-224ENST00000497488 OTUD5Q96G74 571 aa9.36□□□□□ -0.91
BRCA1-224ENST00000497488 VRTNQ9H8Y1 702 aa9.36□□□□□ -0.91
BRCA1-224ENST00000497488 HDGFL1Q5TGJ6 251 aa9.35□□□□□ -0.91
BRCA1-224ENST00000497488 ADAMTS19Q8TE59 1207 aa9.35□□□□□ -0.91
BRCA1-224ENST00000497488 UPF1Q92900 1129 aaKnown RBP eCLIP9.35□□□□□ -0.91
BRCA1-224ENST00000497488 NPDC1Q9NQX5 325 aaPredicted RBP9.35□□□□□ -0.91
BRCA1-224ENST00000497488 LIMD1Q9UGP4 676 aa9.35□□□□□ -0.91
BRCA1-224ENST00000497488 DIXDC1Q155Q3 683 aa9.34□□□□□ -0.91
BRCA1-224ENST00000497488 MICALL2Q8IY33 904 aa9.34□□□□□ -0.91
BRCA1-224ENST00000497488 CDHR5Q9HBB8 845 aa9.33□□□□□ -0.92
BRCA1-224ENST00000497488 GNEQ9Y223 722 aaKnown RBP9.33□□□□□ -0.92
BRCA1-224ENST00000497488 C2orf72A6NCS6 295 aa9.32□□□□□ -0.92
BRCA1-224ENST00000497488 PPP1R12CQ9BZL4 782 aa9.32□□□□□ -0.92
BRCA1-224ENST00000497488 TMEM88BA6NKF7 163 aa9.31□□□□□ -0.92
BRCA1-224ENST00000497488 KIF3CO14782 793 aa9.31□□□□□ -0.92
BRCA1-224ENST00000497488 TUSC1Q2TAM9 212 aa9.29□□□□□ -0.92
BRCA1-224ENST00000497488 RIC3Q7Z5B4 369 aa9.29□□□□□ -0.92
BRCA1-224ENST00000497488 METTL3Q86U44 580 aaKnown RBP9.29□□□□□ -0.92
BRCA1-224ENST00000497488 NLRP7Q8WX94 980 aa9.29□□□□□ -0.92
BRCA1-224ENST00000497488 CHMP4AQ9BY43 222 aa9.29□□□□□ -0.92
BRCA1-224ENST00000497488 KIAA1522Q9P206 1035 aaPredicted RBP9.29□□□□□ -0.92
BRCA1-224ENST00000497488 CCDC125Q86Z20 511 aa9.28□□□□□ -0.92
BRCA1-224ENST00000497488 EVI5O60447 810 aa9.27□□□□□ -0.93
BRCA1-224ENST00000497488 ATG7O95352 703 aa9.27□□□□□ -0.93
BRCA1-224ENST00000497488 TXNDC2Q86VQ3 553 aa9.27□□□□□ -0.93
BRCA1-224ENST00000497488 L3MBTL3Q96JM7 780 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-224ENST00000497488 BOLA1Q9Y3E2 137 aa9.27□□□□□ -0.93
BRCA1-224ENST00000497488 PALM3A6NDB9 673 aaPredicted RBP9.26□□□□□ -0.93
BRCA1-224ENST00000497488 OATP04181 439 aa9.26□□□□□ -0.93
BRCA1-224ENST00000497488 EN1Q05925 392 aaPredicted RBP9.26□□□□□ -0.93
BRCA1-224ENST00000497488 WASHC4Q2M389 1173 aa9.26□□□□□ -0.93
BRCA1-224ENST00000497488 MAMSTRQ6ZN01 415 aa9.26□□□□□ -0.93
BRCA1-224ENST00000497488 MRRFQ96E11 262 aaKnown RBP9.26□□□□□ -0.93
BRCA1-224ENST00000497488 TMEM121BQ9BXQ6 578 aaPredicted RBP9.26□□□□□ -0.93
BRCA1-224ENST00000497488 SCUBE2Q9NQ36 999 aa9.25□□□□□ -0.93
BRCA1-224ENST00000497488 SPTLC1O15269 473 aa9.24□□□□□ -0.93
BRCA1-224ENST00000497488 AP1G2O75843 785 aa9.24□□□□□ -0.93
BRCA1-224ENST00000497488 LMOD1P29536 600 aaPredicted RBP9.24□□□□□ -0.93
BRCA1-224ENST00000497488 FAM161AQ3B820 660 aa9.24□□□□□ -0.93
BRCA1-224ENST00000497488 B4GALNT3Q6L9W6 998 aa9.24□□□□□ -0.93
BRCA1-224ENST00000497488 ZNF710Q8N1W2 664 aa9.24□□□□□ -0.93
BRCA1-224ENST00000497488 NDUFB9Q9Y6M9 179 aa9.24□□□□□ -0.93
BRCA1-224ENST00000497488 USP17L8P0C7I0 530 aa9.23□□□□□ -0.93
BRCA1-224ENST00000497488 ERCC3P19447 782 aa9.23□□□□□ -0.93
BRCA1-224ENST00000497488 PXYLP1Q8TE99 480 aa9.23□□□□□ -0.93
BRCA1-224ENST00000497488 SPIRE2Q8WWL2 714 aa9.23□□□□□ -0.93
BRCA1-224ENST00000497488 MAP3K7O43318 606 aa9.22□□□□□ -0.93
BRCA1-224ENST00000497488 GJD4Q96KN9 370 aaPredicted RBP9.22□□□□□ -0.93
BRCA1-224ENST00000497488 RSBN1LQ6PCB5 846 aaPredicted RBP9.21□□□□□ -0.94
BRCA1-224ENST00000497488 DNAJC14Q6Y2X3 702 aaPredicted RBP9.21□□□□□ -0.94
BRCA1-224ENST00000497488 QPCTQ16769 361 aa9.2□□□□□ -0.94
BRCA1-224ENST00000497488 EPAS1Q99814 870 aa9.2□□□□□ -0.94
BRCA1-224ENST00000497488 ALG2Q9H553 416 aa9.2□□□□□ -0.94
BRCA1-224ENST00000497488 TFIP11Q9UBB9 837 aaKnown RBP9.2□□□□□ -0.94
BRCA1-224ENST00000497488 LILRB3O75022 631 aa9.19□□□□□ -0.94
BRCA1-224ENST00000497488 ZNF16P17020 682 aaPredicted RBP9.19□□□□□ -0.94
BRCA1-224ENST00000497488 CANXP27824 592 aaKnown RBP9.19□□□□□ -0.94
BRCA1-224ENST00000497488 CSPP1Q1MSJ5 1256 aa9.19□□□□□ -0.94
BRCA1-224ENST00000497488 CDCA8Q53HL2 280 aa9.19□□□□□ -0.94
BRCA1-224ENST00000497488 SLAIN1Q8ND83 568 aa9.19□□□□□ -0.94
BRCA1-224ENST00000497488 CCER1Q8TC90 406 aaPredicted RBP9.19□□□□□ -0.94
BRCA1-224ENST00000497488 UCN2Q96RP3 112 aa9.19□□□□□ -0.94
BRCA1-224ENST00000497488 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.19□□□□□ -0.94
BRCA1-224ENST00000497488 ADGRG1Q9Y653 693 aa9.19□□□□□ -0.94
BRCA1-224ENST00000497488 GPR37L1O60883 481 aa9.18□□□□□ -0.94
BRCA1-224ENST00000497488 VAC14Q08AM6 782 aa9.18□□□□□ -0.94
BRCA1-224ENST00000497488 TMEM92Q6UXU6 159 aa9.18□□□□□ -0.94
BRCA1-224ENST00000497488 C3orf67Q6ZVT6 689 aa9.18□□□□□ -0.94
BRCA1-224ENST00000497488 SIRT1Q96EB6 747 aa9.18□□□□□ -0.94
BRCA1-224ENST00000497488 G3V3G9 751 aa9.17□□□□□ -0.94
BRCA1-224ENST00000497488 PHF14O94880 888 aa9.17□□□□□ -0.94
BRCA1-224ENST00000497488 TCF3P15923 654 aa9.17□□□□□ -0.94
BRCA1-224ENST00000497488 TSR1Q2NL82 804 aaKnown RBP9.17□□□□□ -0.94
BRCA1-224ENST00000497488 RTL5Q5HYW3 569 aaPredicted RBP9.17□□□□□ -0.94
BRCA1-224ENST00000497488 ANO8Q9HCE9 1232 aaPredicted RBP9.17□□□□□ -0.94
BRCA1-224ENST00000497488 GJA5P36382 358 aa9.16□□□□□ -0.94
BRCA1-224ENST00000497488 RBM33Q96EV2 1170 aaKnown RBP9.16□□□□□ -0.94
BRCA1-224ENST00000497488 DRC1Q96MC2 740 aa9.16□□□□□ -0.94
BRCA1-224ENST00000497488 C8orf37Q96NL8 207 aa9.16□□□□□ -0.94
BRCA1-224ENST00000497488 MAFBQ9Y5Q3 323 aaPredicted RBP9.16□□□□□ -0.94
BRCA1-224ENST00000497488 PPM1GO15355 546 aaPredicted RBP9.15□□□□□ -0.94
BRCA1-224ENST00000497488 MOXD2PA6NHM9 499 aa9.14□□□□□ -0.95
BRCA1-224ENST00000497488 PADI6Q6TGC4 694 aa9.14□□□□□ -0.95
BRCA1-224ENST00000497488 SREK1Q8WXA9 508 aaKnown RBP9.14□□□□□ -0.95
BRCA1-224ENST00000497488 BCL2L13Q9BXK5 485 aa9.14□□□□□ -0.95
BRCA1-224ENST00000497488 NOM1Q5C9Z4 860 aaKnown RBP9.13□□□□□ -0.95
BRCA1-224ENST00000497488 CD46P15529 392 aa9.12□□□□□ -0.95
BRCA1-224ENST00000497488 TRIM34Q9BYJ4 488 aa9.12□□□□□ -0.95
BRCA1-224ENST00000497488 PCDHB15Q9Y5E8 787 aa9.12□□□□□ -0.95
BRCA1-224ENST00000497488 NUTM2BA6NNL0 878 aaPredicted RBP9.11□□□□□ -0.95
BRCA1-224ENST00000497488 NUTM2EB1AL46 878 aaPredicted RBP9.11□□□□□ -0.95
BRCA1-224ENST00000497488 SOX11P35716 441 aa9.11□□□□□ -0.95
BRCA1-224ENST00000497488 ELOAQ14241 798 aaKnown RBP9.11□□□□□ -0.95
BRCA1-224ENST00000497488 NUTM2DQ5VT03 806 aaPredicted RBP9.11□□□□□ -0.95
BRCA1-224ENST00000497488 PHLDB3Q6NSJ2 640 aa9.11□□□□□ -0.95
BRCA1-224ENST00000497488 NUTM1Q86Y26 1132 aa9.11□□□□□ -0.95
BRCA1-224ENST00000497488 NUTM2AQ8IVF1 878 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms