RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 HDGFP51858 240 aaKnown RBP9.41□□□□□ -0.9
CSMD3-208ENST00000497026 ADGRG1Q9Y653 693 aa9.41□□□□□ -0.9
CSMD3-208ENST00000497026 KCNC4Q03721 635 aa9.39□□□□□ -0.91
CSMD3-208ENST00000497026 GPR37O15354 613 aa9.39□□□□□ -0.91
CSMD3-208ENST00000497026 HIC1Q14526 733 aa9.38□□□□□ -0.91
CSMD3-208ENST00000497026 GPIHBP1Q8IV16 184 aa9.38□□□□□ -0.91
CSMD3-208ENST00000497026 RBM46Q8TBY0 533 aaKnown RBP9.38□□□□□ -0.91
CSMD3-208ENST00000497026 EIF4G1Q04637 1599 aaKnown RBP9.37□□□□□ -0.91
CSMD3-208ENST00000497026 GFRA3O60609 400 aa9.37□□□□□ -0.91
CSMD3-208ENST00000497026 RCCD1A6NED2 376 aa9.36□□□□□ -0.91
CSMD3-208ENST00000497026 GNPATO15228 680 aa9.36□□□□□ -0.91
CSMD3-208ENST00000497026 DNAJB2P25686 324 aa9.35□□□□□ -0.91
CSMD3-208ENST00000497026 APLP1P51693 650 aa9.35□□□□□ -0.91
CSMD3-208ENST00000497026 CC2D2AQ9P2K1 1620 aa9.34□□□□□ -0.91
CSMD3-208ENST00000497026 SLF2Q8IX21 1173 aa9.34□□□□□ -0.91
CSMD3-208ENST00000497026 NLRP7Q8WX94 980 aa9.34□□□□□ -0.91
CSMD3-208ENST00000497026 PXYLP1Q8TE99 480 aa9.32□□□□□ -0.92
CSMD3-208ENST00000497026 TMEM134Q9H6X4 195 aa9.32□□□□□ -0.92
CSMD3-208ENST00000497026 NRG2O14511 850 aaPredicted RBP9.31□□□□□ -0.92
CSMD3-208ENST00000497026 TULP1O00294 542 aaPredicted RBP9.31□□□□□ -0.92
CSMD3-208ENST00000497026 OATP04181 439 aa9.31□□□□□ -0.92
CSMD3-208ENST00000497026 METTL3Q86U44 580 aaKnown RBP9.31□□□□□ -0.92
CSMD3-208ENST00000497026 SLC4A3P48751 1232 aa9.3□□□□□ -0.92
CSMD3-208ENST00000497026 TJAP1Q5JTD0 557 aa9.3□□□□□ -0.92
CSMD3-208ENST00000497026 MTRQ99707 1265 aa9.3□□□□□ -0.92
CSMD3-208ENST00000497026 LCE2BO14633 110 aa9.29□□□□□ -0.92
CSMD3-208ENST00000497026 COPS2P61201 443 aa9.29□□□□□ -0.92
CSMD3-208ENST00000497026 ZNF516Q92618 1163 aa9.29□□□□□ -0.92
CSMD3-208ENST00000497026 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.28□□□□□ -0.92
CSMD3-208ENST00000497026 ZNF787Q6DD87 383 aa9.28□□□□□ -0.92
CSMD3-208ENST00000497026 PHOX2BQ99453 314 aa9.27□□□□□ -0.93
CSMD3-208ENST00000497026 SLC10A3P09131 477 aa9.26□□□□□ -0.93
CSMD3-208ENST00000497026 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.25□□□□□ -0.93
CSMD3-208ENST00000497026 CFHP08603 1231 aa9.24□□□□□ -0.93
CSMD3-208ENST00000497026 NKX2-3Q8TAU0 364 aa9.24□□□□□ -0.93
CSMD3-208ENST00000497026 IL21Q9HBE4 155 aa9.24□□□□□ -0.93
CSMD3-208ENST00000497026 CECR2Q9BXF3 1484 aa9.24□□□□□ -0.93
CSMD3-208ENST00000497026 LMOD2Q6P5Q4 547 aa9.23□□□□□ -0.93
CSMD3-208ENST00000497026 NECTIN2Q92692 538 aa9.23□□□□□ -0.93
CSMD3-208ENST00000497026 BLOC1S3Q6QNY0 202 aa9.22□□□□□ -0.93
CSMD3-208ENST00000497026 PCDHB3Q9Y5E6 796 aa9.22□□□□□ -0.93
CSMD3-208ENST00000497026 DDX11L8A8MPP1 907 aa9.22□□□□□ -0.93
CSMD3-208ENST00000497026 V9GY48 417 aaPredicted RBP9.22□□□□□ -0.93
CSMD3-208ENST00000497026 RDH13Q8NBN7 331 aa9.21□□□□□ -0.94
CSMD3-208ENST00000497026 MAP2K5Q13163 448 aa9.2□□□□□ -0.94
CSMD3-208ENST00000497026 KMT5BQ4FZB7 885 aa9.2□□□□□ -0.94
CSMD3-208ENST00000497026 PRKD2Q9BZL6 878 aa9.2□□□□□ -0.94
CSMD3-208ENST00000497026 DAXXQ9UER7 740 aaPredicted RBP9.2□□□□□ -0.94
CSMD3-208ENST00000497026 IRF6O14896 467 aa9.19□□□□□ -0.94
CSMD3-208ENST00000497026 PRR14Q9BWN1 585 aa9.19□□□□□ -0.94
CSMD3-208ENST00000497026 SMARCA4P51532 1647 aa9.18□□□□□ -0.94
CSMD3-208ENST00000497026 ACTN4O43707 911 aaKnown RBP9.18□□□□□ -0.94
CSMD3-208ENST00000497026 PUS10Q3MIT2 529 aaKnown RBP9.18□□□□□ -0.94
CSMD3-208ENST00000497026 ZNF775Q96BV0 537 aaPredicted RBP9.18□□□□□ -0.94
CSMD3-208ENST00000497026 TLL1O43897 1013 aa9.17□□□□□ -0.94
CSMD3-208ENST00000497026 ZPR1O75312 459 aa9.17□□□□□ -0.94
CSMD3-208ENST00000497026 PPP1R18Q6NYC8 613 aa9.17□□□□□ -0.94
CSMD3-208ENST00000497026 CCDC102AQ96A19 550 aa9.17□□□□□ -0.94
CSMD3-208ENST00000497026 MDM2Q00987 491 aaPredicted RBP9.15□□□□□ -0.94
CSMD3-208ENST00000497026 RSPH4AQ5TD94 716 aa9.15□□□□□ -0.94
CSMD3-208ENST00000497026 MINK1Q8N4C8 1332 aaPredicted RBP9.15□□□□□ -0.94
CSMD3-208ENST00000497026 BAZ1AQ9NRL2 1556 aaPredicted RBP9.14□□□□□ -0.95
CSMD3-208ENST00000497026 KRI1Q8N9T8 703 aaKnown RBP9.14□□□□□ -0.95
CSMD3-208ENST00000497026 ZC3H15Q8WU90 426 aaKnown RBP9.13□□□□□ -0.95
CSMD3-208ENST00000497026 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.13□□□□□ -0.95
CSMD3-208ENST00000497026 ATAD2BQ9ULI0 1458 aa9.12□□□□□ -0.95
CSMD3-208ENST00000497026 FUT2Q10981 343 aa9.12□□□□□ -0.95
CSMD3-208ENST00000497026 PDZRN3Q9UPQ7 1066 aa9.12□□□□□ -0.95
CSMD3-208ENST00000497026 SULF1Q8IWU6 871 aa9.11□□□□□ -0.95
CSMD3-208ENST00000497026 MROH2BQ7Z745 1585 aa9.1□□□□□ -0.95
CSMD3-208ENST00000497026 NCAPD3P42695 1498 aa9.1□□□□□ -0.95
CSMD3-208ENST00000497026 NR1I2O75469 434 aa9.1□□□□□ -0.95
CSMD3-208ENST00000497026 GCGRP47871 477 aa9.1□□□□□ -0.95
CSMD3-208ENST00000497026 PEG3Q9GZU2 1588 aa9.1□□□□□ -0.95
CSMD3-208ENST00000497026 ZMYND10O75800 440 aa9.09□□□□□ -0.95
CSMD3-208ENST00000497026 SCUBE3Q8IX30 993 aa9.09□□□□□ -0.95
CSMD3-208ENST00000497026 SMARCA2P51531 1590 aa9.09□□□□□ -0.95
CSMD3-208ENST00000497026 PPEF1O14829 653 aaPredicted RBP9.08□□□□□ -0.96
CSMD3-208ENST00000497026 BARGINQ6ZT62 677 aa9.08□□□□□ -0.96
CSMD3-208ENST00000497026 HMGXB3Q12766 1538 aa9.08□□□□□ -0.96
CSMD3-208ENST00000497026 S1PR4O95977 384 aa9.07□□□□□ -0.96
CSMD3-208ENST00000497026 ATP6V1AP38606 617 aa9.06□□□□□ -0.96
CSMD3-208ENST00000497026 MORN1Q5T089 497 aa9.06□□□□□ -0.96
CSMD3-208ENST00000497026 RNF223E7ERA6 249 aa9.05□□□□□ -0.96
CSMD3-208ENST00000497026 SLC24A1O60721 1099 aa9.05□□□□□ -0.96
CSMD3-208ENST00000497026 ADH1BP00325 375 aa9.05□□□□□ -0.96
CSMD3-208ENST00000497026 CD46P15529 392 aa9.05□□□□□ -0.96
CSMD3-208ENST00000497026 GGCXP38435 758 aa9.05□□□□□ -0.96
CSMD3-208ENST00000497026 REPIN1Q9BWE0 567 aaKnown RBP9.05□□□□□ -0.96
CSMD3-208ENST00000497026 SLC27A5Q9Y2P5 690 aa9.05□□□□□ -0.96
CSMD3-208ENST00000497026 HLA-CQ95604 372 aa9.04□□□□□ -0.96
CSMD3-208ENST00000497026 SPSB2Q99619 263 aa9.04□□□□□ -0.96
CSMD3-208ENST00000497026 GPCPD1Q9NPB8 672 aa9.04□□□□□ -0.96
CSMD3-208ENST00000497026 CLCN1P35523 988 aa9.03□□□□□ -0.96
CSMD3-208ENST00000497026 SLC6A16Q9GZN6 736 aa9.03□□□□□ -0.96
CSMD3-208ENST00000497026 FAM217BQ9NTX9 383 aaPredicted RBP9.03□□□□□ -0.96
CSMD3-208ENST00000497026 BAZ1BQ9UIG0 1483 aaKnown RBP9.02□□□□□ -0.97
CSMD3-208ENST00000497026 WIZO95785 1651 aa9.02□□□□□ -0.97
CSMD3-208ENST00000497026 KDM4AO75164 1064 aa9.01□□□□□ -0.97
CSMD3-208ENST00000497026 TTLL12Q14166 644 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms