RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 TET3O43151 1660 aa13.02□□□□□ -0.33
LRCH3-219ENST00000494069 RPRD2Q5VT52 1461 aaKnown RBP13.01□□□□□ -0.33
LRCH3-219ENST00000494069 SLC26A8Q96RN1 970 aa13□□□□□ -0.33
LRCH3-219ENST00000494069 E9PCH4 1651 aa12.99□□□□□ -0.33
LRCH3-219ENST00000494069 ADGRB3O60242 1522 aa12.99□□□□□ -0.33
LRCH3-219ENST00000494069 LRRC7Q96NW7 1537 aa12.99□□□□□ -0.33
LRCH3-219ENST00000494069 CHGAP10645 457 aaKnown RBP12.99□□□□□ -0.33
LRCH3-219ENST00000494069 IQGAP3Q86VI3 1631 aa12.99□□□□□ -0.33
LRCH3-219ENST00000494069 TOM1O60784 492 aa12.98□□□□□ -0.33
LRCH3-219ENST00000494069 GCC2Q8IWJ2 1684 aa12.98□□□□□ -0.33
LRCH3-219ENST00000494069 KDM5AP29375 1690 aaKnown RBP12.97□□□□□ -0.33
LRCH3-219ENST00000494069 NUTM2DQ5VT03 806 aaPredicted RBP12.97□□□□□ -0.33
LRCH3-219ENST00000494069 ALKQ9UM73 1620 aa12.97□□□□□ -0.33
LRCH3-219ENST00000494069 NAIPQ13075 1403 aa12.96□□□□□ -0.33
LRCH3-219ENST00000494069 RBM33Q96EV2 1170 aaKnown RBP12.96□□□□□ -0.33
LRCH3-219ENST00000494069 BCANQ96GW7 911 aa12.96□□□□□ -0.33
LRCH3-219ENST00000494069 MYO5BQ9ULV0 1848 aa12.96□□□□□ -0.33
LRCH3-219ENST00000494069 ZFYVE9O95405 1425 aa12.96□□□□□ -0.34
LRCH3-219ENST00000494069 TMEM131LA2VDJ0 1609 aa12.95□□□□□ -0.34
LRCH3-219ENST00000494069 HSPA1LP34931 641 aa12.95□□□□□ -0.34
LRCH3-219ENST00000494069 RIMS2Q9UQ26 1411 aa12.95□□□□□ -0.34
LRCH3-219ENST00000494069 DISP3Q9P2K9 1392 aa12.94□□□□□ -0.34
LRCH3-219ENST00000494069 PPP1R15AO75807 674 aaPredicted RBP12.93□□□□□ -0.34
LRCH3-219ENST00000494069 KCNA6P17658 529 aa12.93□□□□□ -0.34
LRCH3-219ENST00000494069 RNF39Q9H2S5 420 aa12.92□□□□□ -0.34
LRCH3-219ENST00000494069 PLEKHG1Q9ULL1 1385 aa12.92□□□□□ -0.34
LRCH3-219ENST00000494069 ILDR2Q71H61 639 aa12.91□□□□□ -0.34
LRCH3-219ENST00000494069 TMEM94Q12767 1356 aa12.91□□□□□ -0.34
LRCH3-219ENST00000494069 XIRP1Q702N8 1843 aaKnown RBP12.9□□□□□ -0.34
LRCH3-219ENST00000494069 PROSER2Q86WR7 435 aaPredicted RBP12.9□□□□□ -0.34
LRCH3-219ENST00000494069 TRIM52Q96A61 297 aa12.9□□□□□ -0.34
LRCH3-219ENST00000494069 HFM1A2PYH4 1435 aa12.89□□□□□ -0.35
LRCH3-219ENST00000494069 HDGFP51858 240 aaKnown RBP12.89□□□□□ -0.35
LRCH3-219ENST00000494069 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.89□□□□□ -0.35
LRCH3-219ENST00000494069 TBX22Q9Y458 520 aa12.88□□□□□ -0.35
LRCH3-219ENST00000494069 ADAMTS13Q76LX8 1427 aa12.88□□□□□ -0.35
LRCH3-219ENST00000494069 SPHKAPQ2M3C7 1700 aa12.86□□□□□ -0.35
LRCH3-219ENST00000494069 ZNF326Q5BKZ1 582 aaKnown RBP12.86□□□□□ -0.35
LRCH3-219ENST00000494069 NWD1Q149M9 1564 aa12.86□□□□□ -0.35
LRCH3-219ENST00000494069 SLC4A1APQ9BWU0 796 aaKnown RBP12.85□□□□□ -0.35
LRCH3-219ENST00000494069 CLTCL1P53675 1640 aa12.84□□□□□ -0.35
LRCH3-219ENST00000494069 PTPRUQ92729 1446 aa12.83□□□□□ -0.36
LRCH3-219ENST00000494069 NKTRP30414 1462 aaKnown RBP12.83□□□□□ -0.36
LRCH3-219ENST00000494069 CHD2O14647 1828 aaKnown RBP12.83□□□□□ -0.36
LRCH3-219ENST00000494069 TRPM2O94759 1503 aa12.83□□□□□ -0.36
LRCH3-219ENST00000494069 CACNB1Q02641 598 aaPredicted RBP12.81□□□□□ -0.36
LRCH3-219ENST00000494069 AMOTL2Q9Y2J4 779 aa12.81□□□□□ -0.36
LRCH3-219ENST00000494069 NRXN3Q9Y4C0 1643 aa12.8□□□□□ -0.36
LRCH3-219ENST00000494069 METP08581 1390 aa12.8□□□□□ -0.36
LRCH3-219ENST00000494069 MSH6P52701 1360 aa12.8□□□□□ -0.36
LRCH3-219ENST00000494069 FAM135BQ49AJ0 1406 aa12.79□□□□□ -0.36
LRCH3-219ENST00000494069 NEXMIFQ5QGS0 1516 aa12.79□□□□□ -0.36
LRCH3-219ENST00000494069 MED1Q15648 1581 aaPredicted RBP12.79□□□□□ -0.36
LRCH3-219ENST00000494069 PIK3R4Q99570 1358 aa12.79□□□□□ -0.36
LRCH3-219ENST00000494069 C14orf37Q86TY3 774 aa12.78□□□□□ -0.36
LRCH3-219ENST00000494069 MPHOSPH9Q99550 1183 aa12.78□□□□□ -0.36
LRCH3-219ENST00000494069 SLAIN2Q9P270 581 aa12.78□□□□□ -0.36
LRCH3-219ENST00000494069 DIP2AQ14689 1571 aa12.77□□□□□ -0.36
LRCH3-219ENST00000494069 SETBP1Q9Y6X0 1596 aa12.77□□□□□ -0.36
LRCH3-219ENST00000494069 ROBO1Q9Y6N7 1651 aa12.76□□□□□ -0.37
LRCH3-219ENST00000494069 KIF1BO60333 1816 aa12.75□□□□□ -0.37
LRCH3-219ENST00000494069 C19orf44Q9H6X5 657 aa12.75□□□□□ -0.37
LRCH3-219ENST00000494069 NCOA3Q9Y6Q9 1424 aa12.74□□□□□ -0.37
LRCH3-219ENST00000494069 SETD5Q9C0A6 1442 aa12.73□□□□□ -0.37
LRCH3-219ENST00000494069 SOCS7O14512 581 aa12.73□□□□□ -0.37
LRCH3-219ENST00000494069 VGFO15240 615 aaPredicted RBP12.73□□□□□ -0.37
LRCH3-219ENST00000494069 RGL3Q3MIN7 710 aa12.73□□□□□ -0.37
LRCH3-219ENST00000494069 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.73□□□□□ -0.37
LRCH3-219ENST00000494069 XRN1Q8IZH2 1706 aaKnown RBP12.72□□□□□ -0.37
LRCH3-219ENST00000494069 ATF3P18847 181 aa12.72□□□□□ -0.37
LRCH3-219ENST00000494069 CADPS2Q86UW7 1296 aa12.72□□□□□ -0.37
LRCH3-219ENST00000494069 RAB3GAP2Q9H2M9 1393 aa12.71□□□□□ -0.37
LRCH3-219ENST00000494069 RPGRIP1LQ68CZ1 1315 aa12.71□□□□□ -0.37
LRCH3-219ENST00000494069 ADGRF5Q8IZF2 1346 aa12.71□□□□□ -0.37
LRCH3-219ENST00000494069 CCDC144AA2RUR9 1427 aa12.71□□□□□ -0.38
LRCH3-219ENST00000494069 RGS17Q9UGC6 210 aaPredicted RBP12.7□□□□□ -0.38
LRCH3-219ENST00000494069 SPATA31E1Q6ZUB1 1445 aa12.7□□□□□ -0.38
LRCH3-219ENST00000494069 C1QBPQ07021 282 aaKnown RBP12.69□□□□□ -0.38
LRCH3-219ENST00000494069 PPLO60437 1756 aa12.69□□□□□ -0.38
LRCH3-219ENST00000494069 ROBO2Q9HCK4 1378 aa12.69□□□□□ -0.38
LRCH3-219ENST00000494069 SLC4A2P04920 1241 aa12.68□□□□□ -0.38
LRCH3-219ENST00000494069 BRINP3Q76B58 766 aa12.68□□□□□ -0.38
LRCH3-219ENST00000494069 SETD1AO15047 1707 aaKnown RBP12.68□□□□□ -0.38
LRCH3-219ENST00000494069 PHLPP1O60346 1717 aa12.68□□□□□ -0.38
LRCH3-219ENST00000494069 MST1RQ04912 1400 aa12.66□□□□□ -0.38
LRCH3-219ENST00000494069 DDX17Q92841 729 aaKnown RBP12.66□□□□□ -0.38
LRCH3-219ENST00000494069 ADGRL3Q9HAR2 1447 aa12.65□□□□□ -0.38
LRCH3-219ENST00000494069 TMEM132EQ6IEE7 984 aa12.65□□□□□ -0.38
LRCH3-219ENST00000494069 COL16A1Q07092 1604 aaPredicted RBP12.65□□□□□ -0.38
LRCH3-219ENST00000494069 JCADQ9P266 1359 aa12.65□□□□□ -0.38
LRCH3-219ENST00000494069 DCCP43146 1447 aa12.64□□□□□ -0.39
LRCH3-219ENST00000494069 STK26Q9P289 416 aa12.64□□□□□ -0.39
LRCH3-219ENST00000494069 PTCH1Q13635 1447 aa12.63□□□□□ -0.39
LRCH3-219ENST00000494069 NALCNQ8IZF0 1738 aa12.63□□□□□ -0.39
LRCH3-219ENST00000494069 ANKRD30BQ9BXX2 1392 aa12.63□□□□□ -0.39
LRCH3-219ENST00000494069 ASXL1Q8IXJ9 1541 aa12.62□□□□□ -0.39
LRCH3-219ENST00000494069 AHDC1Q5TGY3 1603 aaPredicted RBP12.62□□□□□ -0.39
LRCH3-219ENST00000494069 POTEAQ6S8J7 498 aa12.62□□□□□ -0.39
LRCH3-219ENST00000494069 WAPLQ7Z5K2 1190 aa12.62□□□□□ -0.39
LRCH3-219ENST00000494069 U3KPZ7 1027 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms