RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 ADRA2BP18089 450 aa10.12□□□□□ -0.79
SMARCE1-211ENST00000493660 C3P01024 1663 aa10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 ARID4BQ4LE39 1312 aaPredicted RBP10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 ZNF316A6NFI3 1004 aaPredicted RBP10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 ESF1Q9H501 851 aaKnown RBP10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 TMEM131LA2VDJ0 1609 aa10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 PRAG1Q86YV5 1406 aa10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 ADAMTSL3P82987 1691 aa10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 MYO5BQ9ULV0 1848 aa10.11□□□□□ -0.79
SMARCE1-211ENST00000493660 SLC52A1Q9NWF4 448 aa10.1□□□□□ -0.79
SMARCE1-211ENST00000493660 SUPT16HQ9Y5B9 1047 aaKnown RBP10.09□□□□□ -0.79
SMARCE1-211ENST00000493660 ZMYM3Q14202 1370 aa10.09□□□□□ -0.79
SMARCE1-211ENST00000493660 MLECQ14165 292 aa10.09□□□□□ -0.79
SMARCE1-211ENST00000493660 NBPF8Q3BBV2 869 aa10.09□□□□□ -0.79
SMARCE1-211ENST00000493660 RPGRIP1LQ68CZ1 1315 aa10.08□□□□□ -0.8
SMARCE1-211ENST00000493660 POLR1AO95602 1720 aaPredicted RBP10.08□□□□□ -0.8
SMARCE1-211ENST00000493660 DCAF11Q8TEB1 546 aa10.08□□□□□ -0.8
SMARCE1-211ENST00000493660 NRXN1Q9ULB1 1477 aa10.08□□□□□ -0.8
SMARCE1-211ENST00000493660 NEXMIFQ5QGS0 1516 aa10.07□□□□□ -0.8
SMARCE1-211ENST00000493660 RIMS1Q86UR5 1692 aaKnown RBP10.07□□□□□ -0.8
SMARCE1-211ENST00000493660 PKNOX2Q96KN3 472 aa10.07□□□□□ -0.8
SMARCE1-211ENST00000493660 RGL3Q3MIN7 710 aa10.07□□□□□ -0.8
SMARCE1-211ENST00000493660 GPRASP1Q5JY77 1395 aa10.06□□□□□ -0.8
SMARCE1-211ENST00000493660 ZFYVE9O95405 1425 aa10.05□□□□□ -0.8
SMARCE1-211ENST00000493660 NLRP1Q9C000 1473 aa10.05□□□□□ -0.8
SMARCE1-211ENST00000493660 UBR1Q8IWV7 1749 aa10.05□□□□□ -0.8
SMARCE1-211ENST00000493660 IQGAP1P46940 1657 aa10.05□□□□□ -0.8
SMARCE1-211ENST00000493660 TNRQ92752 1358 aa10.05□□□□□ -0.8
SMARCE1-211ENST00000493660 IDI1Q13907 227 aa10.04□□□□□ -0.8
SMARCE1-211ENST00000493660 SALL2Q9Y467 1007 aaPredicted RBP10.04□□□□□ -0.8
SMARCE1-211ENST00000493660 SETBP1Q9Y6X0 1596 aa10.04□□□□□ -0.8
SMARCE1-211ENST00000493660 FBXO31Q5XUX0 539 aaPredicted RBP10.04□□□□□ -0.8
SMARCE1-211ENST00000493660 KDM2AQ9Y2K7 1162 aa10.04□□□□□ -0.8
SMARCE1-211ENST00000493660 EIF4G2P78344 907 aaKnown RBP eCLIP10.03□□□□□ -0.8
SMARCE1-211ENST00000493660 MYO3AQ8NEV4 1616 aa10.03□□□□□ -0.8
SMARCE1-211ENST00000493660 A2ML1A8K2U0 1454 aa10.03□□□□□ -0.8
SMARCE1-211ENST00000493660 PODXL2Q9NZ53 605 aa10.03□□□□□ -0.8
SMARCE1-211ENST00000493660 PLEKHG5O94827 1062 aa10.02□□□□□ -0.81
SMARCE1-211ENST00000493660 ROCK2O75116 1388 aaKnown RBP10.02□□□□□ -0.81
SMARCE1-211ENST00000493660 PIK3C2GO75747 1445 aa10.02□□□□□ -0.81
SMARCE1-211ENST00000493660 ZNF142P52746 1687 aaPredicted RBP10.02□□□□□ -0.81
SMARCE1-211ENST00000493660 ZNF326Q5BKZ1 582 aaKnown RBP10.02□□□□□ -0.81
SMARCE1-211ENST00000493660 CHGAP10645 457 aaKnown RBP10.01□□□□□ -0.81
SMARCE1-211ENST00000493660 YTHDC1Q96MU7 727 aaKnown RBP10.01□□□□□ -0.81
SMARCE1-211ENST00000493660 USP47Q96K76 1375 aa10□□□□□ -0.81
SMARCE1-211ENST00000493660 VGFO15240 615 aaPredicted RBP10□□□□□ -0.81
SMARCE1-211ENST00000493660 HSPA5P11021 654 aaKnown RBP10□□□□□ -0.81
SMARCE1-211ENST00000493660 SETD1BQ9UPS6 1966 aaKnown RBP9.99□□□□□ -0.81
SMARCE1-211ENST00000493660 CARD11Q9BXL7 1154 aa9.99□□□□□ -0.81
SMARCE1-211ENST00000493660 ADGRF5Q8IZF2 1346 aa9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 SCAF11Q99590 1463 aaKnown RBP9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 SETD1AO15047 1707 aaKnown RBP9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 RIMS2Q9UQ26 1411 aa9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 CEP170BQ9Y4F5 1589 aaPredicted RBP9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 STAG3Q9UJ98 1225 aa9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 SLIT1O75093 1534 aa9.98□□□□□ -0.81
SMARCE1-211ENST00000493660 ADGRB1O14514 1584 aa9.97□□□□□ -0.81
SMARCE1-211ENST00000493660 DEKP35659 375 aaKnown RBP9.97□□□□□ -0.81
SMARCE1-211ENST00000493660 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.96□□□□□ -0.81
SMARCE1-211ENST00000493660 ARHGAP23Q9P227 1491 aa9.96□□□□□ -0.81
SMARCE1-211ENST00000493660 C14orf93Q9H972 538 aaKnown RBP9.96□□□□□ -0.82
SMARCE1-211ENST00000493660 HDGFP51858 240 aaKnown RBP9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 NBPF1Q3BBV0 1214 aa9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 EIF3AQ14152 1382 aaKnown RBP9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 ALKQ9UM73 1620 aa9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 NRXN3Q9Y4C0 1643 aa9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 TMEM2Q9UHN6 1383 aa9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 ARHGEF28Q8N1W1 1705 aaKnown RBP9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 PTPRMP28827 1452 aa9.95□□□□□ -0.82
SMARCE1-211ENST00000493660 CEBPAP49715 358 aaPredicted RBP9.94□□□□□ -0.82
SMARCE1-211ENST00000493660 ASXL1Q8IXJ9 1541 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 KNDC1Q76NI1 1749 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 CFAP70Q5T0N1 1121 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 DIP2AQ14689 1571 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 CCDC7Q96M83 1385 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 POTEHQ6S545 545 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 CCDC136Q96JN2 1154 aa9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 RBM19Q9Y4C8 960 aaKnown RBP9.93□□□□□ -0.82
SMARCE1-211ENST00000493660 QRICH2Q9H0J4 1663 aa9.92□□□□□ -0.82
SMARCE1-211ENST00000493660 HIRIP3Q9BW71 556 aaPredicted RBP9.91□□□□□ -0.82
SMARCE1-211ENST00000493660 PLEKHG1Q9ULL1 1385 aa9.91□□□□□ -0.82
SMARCE1-211ENST00000493660 SBNO2Q9Y2G9 1366 aa9.91□□□□□ -0.82
SMARCE1-211ENST00000493660 DLC1Q96QB1 1528 aa9.91□□□□□ -0.82
SMARCE1-211ENST00000493660 THEMISQ8N1K5 641 aaPredicted RBP9.91□□□□□ -0.82
SMARCE1-211ENST00000493660 ST20-MTHFSA0A0A6YYL1 179 aa9.9□□□□□ -0.82
SMARCE1-211ENST00000493660 WASHC2AQ641Q2 1341 aa9.9□□□□□ -0.82
SMARCE1-211ENST00000493660 FANCIQ9NVI1 1328 aa9.9□□□□□ -0.83
SMARCE1-211ENST00000493660 KIF7Q2M1P5 1343 aa9.89□□□□□ -0.83
SMARCE1-211ENST00000493660 MED14O60244 1454 aa9.88□□□□□ -0.83
SMARCE1-211ENST00000493660 NUTM2DQ5VT03 806 aaPredicted RBP9.88□□□□□ -0.83
SMARCE1-211ENST00000493660 TESK2Q96S53 571 aa9.88□□□□□ -0.83
SMARCE1-211ENST00000493660 EID1Q9Y6B2 187 aa9.88□□□□□ -0.83
SMARCE1-211ENST00000493660 YTHDC2Q9H6S0 1430 aaKnown RBP9.88□□□□□ -0.83
SMARCE1-211ENST00000493660 CPS1P31327 1500 aa9.87□□□□□ -0.83
SMARCE1-211ENST00000493660 LRPPRCP42704 1394 aaKnown RBP9.87□□□□□ -0.83
SMARCE1-211ENST00000493660 ADAMTS13Q76LX8 1427 aa9.87□□□□□ -0.83
SMARCE1-211ENST00000493660 C11orf95C9JLR9 678 aaPredicted RBP9.86□□□□□ -0.83
SMARCE1-211ENST00000493660 TMF1P82094 1093 aa9.86□□□□□ -0.83
SMARCE1-211ENST00000493660 MIER1Q8N108 512 aa9.86□□□□□ -0.83
SMARCE1-211ENST00000493660 TECPR2O15040 1411 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms