RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 RIMS2Q9UQ26 1411 aa28.76■■■□□ 2.19
SHROOM3-209ENST00000490690 SCAF11Q99590 1463 aaKnown RBP28.75■■■□□ 2.19
SHROOM3-209ENST00000490690 PPP1R15AO75807 674 aaPredicted RBP28.75■■■□□ 2.19
SHROOM3-209ENST00000490690 TXNDC2Q86VQ3 553 aa28.75■■■□□ 2.19
SHROOM3-209ENST00000490690 VGFO15240 615 aaPredicted RBP28.74■■■□□ 2.19
SHROOM3-209ENST00000490690 ZFYVE9O95405 1425 aa28.73■■■□□ 2.19
SHROOM3-209ENST00000490690 RGL3Q3MIN7 710 aa28.71■■■□□ 2.19
SHROOM3-209ENST00000490690 MED14O60244 1454 aa28.69■■■□□ 2.18
SHROOM3-209ENST00000490690 PLEKHG1Q9ULL1 1385 aa28.66■■■□□ 2.18
SHROOM3-209ENST00000490690 NEXMIFQ5QGS0 1516 aa28.66■■■□□ 2.18
SHROOM3-209ENST00000490690 NEUROD1Q13562 356 aa28.66■■■□□ 2.18
SHROOM3-209ENST00000490690 TIMELESSQ9UNS1 1208 aa28.66■■■□□ 2.18
SHROOM3-209ENST00000490690 LTKP29376 864 aa28.65■■■□□ 2.18
SHROOM3-209ENST00000490690 SIN3AQ96ST3 1273 aa28.65■■■□□ 2.18
SHROOM3-209ENST00000490690 MYO5BQ9ULV0 1848 aa28.64■■■□□ 2.18
SHROOM3-209ENST00000490690 TONSLQ96HA7 1378 aa28.64■■■□□ 2.18
SHROOM3-209ENST00000490690 POLR1AO95602 1720 aaPredicted RBP28.64■■■□□ 2.18
SHROOM3-209ENST00000490690 NPHP4O75161 1426 aaPredicted RBP28.64■■■□□ 2.18
SHROOM3-209ENST00000490690 NCKAP5LQ9HCH0 1330 aa28.64■■■□□ 2.17
SHROOM3-209ENST00000490690 MYOM2P54296 1465 aa28.62■■■□□ 2.17
SHROOM3-209ENST00000490690 BCANQ96GW7 911 aa28.6■■■□□ 2.17
SHROOM3-209ENST00000490690 DCAF11Q8TEB1 546 aa28.59■■■□□ 2.17
SHROOM3-209ENST00000490690 PPLO60437 1756 aa28.57■■■□□ 2.16
SHROOM3-209ENST00000490690 STRCQ7RTU9 1775 aa28.55■■■□□ 2.16
SHROOM3-209ENST00000490690 IQGAP1P46940 1657 aa28.54■■■□□ 2.16
SHROOM3-209ENST00000490690 DIP2AQ14689 1571 aa28.54■■■□□ 2.16
SHROOM3-209ENST00000490690 NUTM2DQ5VT03 806 aaPredicted RBP28.54■■■□□ 2.16
SHROOM3-209ENST00000490690 IFT172Q9UG01 1749 aa28.53■■■□□ 2.16
SHROOM3-209ENST00000490690 L3MBTL2Q969R5 705 aa28.53■■■□□ 2.16
SHROOM3-209ENST00000490690 SETBP1Q9Y6X0 1596 aa28.53■■■□□ 2.16
SHROOM3-209ENST00000490690 TBX22Q9Y458 520 aa28.52■■■□□ 2.16
SHROOM3-209ENST00000490690 NRXN1Q9ULB1 1477 aa28.51■■■□□ 2.15
SHROOM3-209ENST00000490690 PIK3C2GO75747 1445 aa28.5■■■□□ 2.15
SHROOM3-209ENST00000490690 PIK3R4Q99570 1358 aa28.5■■■□□ 2.15
SHROOM3-209ENST00000490690 KDM2AQ9Y2K7 1162 aa28.49■■■□□ 2.15
SHROOM3-209ENST00000490690 ADGRF5Q8IZF2 1346 aa28.48■■■□□ 2.15
SHROOM3-209ENST00000490690 ADAMTS13Q76LX8 1427 aa28.44■■■□□ 2.14
SHROOM3-209ENST00000490690 SLC26A8Q96RN1 970 aa28.43■■■□□ 2.14
SHROOM3-209ENST00000490690 LAMC1P11047 1609 aa28.43■■■□□ 2.14
SHROOM3-209ENST00000490690 C14orf93Q9H972 538 aaKnown RBP28.42■■■□□ 2.14
SHROOM3-209ENST00000490690 PRAG1Q86YV5 1406 aa28.42■■■□□ 2.14
SHROOM3-209ENST00000490690 ALKQ9UM73 1620 aa28.38■■■□□ 2.13
SHROOM3-209ENST00000490690 NRXN3Q9Y4C0 1643 aa28.38■■■□□ 2.13
SHROOM3-209ENST00000490690 KCNA6P17658 529 aa28.36■■■□□ 2.13
SHROOM3-209ENST00000490690 CFAP70Q5T0N1 1121 aa28.32■■■□□ 2.12
SHROOM3-209ENST00000490690 KIAA1210Q9ULL0 1709 aa28.32■■■□□ 2.12
SHROOM3-209ENST00000490690 SENP3Q9H4L4 574 aaPredicted RBP28.31■■■□□ 2.12
SHROOM3-209ENST00000490690 CPS1P31327 1500 aa28.3■■■□□ 2.12
SHROOM3-209ENST00000490690 NKTRP30414 1462 aaKnown RBP28.3■■■□□ 2.12
SHROOM3-209ENST00000490690 METP08581 1390 aa28.29■■■□□ 2.12
SHROOM3-209ENST00000490690 NWD1Q149M9 1564 aa28.28■■■□□ 2.12
SHROOM3-209ENST00000490690 LRPPRCP42704 1394 aaKnown RBP28.27■■■□□ 2.12
SHROOM3-209ENST00000490690 AMOTL2Q9Y2J4 779 aa28.27■■■□□ 2.12
SHROOM3-209ENST00000490690 ZNF335Q9H4Z2 1342 aaPredicted RBP28.26■■■□□ 2.11
SHROOM3-209ENST00000490690 SETD1AO15047 1707 aaKnown RBP28.26■■■□□ 2.11
SHROOM3-209ENST00000490690 ROCK2O75116 1388 aaKnown RBP28.24■■■□□ 2.11
SHROOM3-209ENST00000490690 ABCC11Q96J66 1382 aa28.24■■■□□ 2.11
SHROOM3-209ENST00000490690 YTHDC2Q9H6S0 1430 aaKnown RBP28.24■■■□□ 2.11
SHROOM3-209ENST00000490690 PTCH1Q13635 1447 aa28.23■■■□□ 2.11
SHROOM3-209ENST00000490690 RALGAPBQ86X10 1494 aa28.22■■■□□ 2.11
SHROOM3-209ENST00000490690 TECPR2O15040 1411 aa28.22■■■□□ 2.11
SHROOM3-209ENST00000490690 ZEB1P37275 1124 aaPredicted RBP28.22■■■□□ 2.11
SHROOM3-209ENST00000490690 SIRT1Q96EB6 747 aa28.22■■■□□ 2.11
SHROOM3-209ENST00000490690 CHD2O14647 1828 aaKnown RBP28.22■■■□□ 2.11
SHROOM3-209ENST00000490690 ADGRB1O14514 1584 aa28.21■■■□□ 2.11
SHROOM3-209ENST00000490690 NCOA3Q9Y6Q9 1424 aa28.2■■■□□ 2.11
SHROOM3-209ENST00000490690 NBPF8Q3BBV2 869 aa28.2■■■□□ 2.1
SHROOM3-209ENST00000490690 TMEM132EQ6IEE7 984 aa28.2■■■□□ 2.1
SHROOM3-209ENST00000490690 GPRASP1Q5JY77 1395 aa28.2■■■□□ 2.1
SHROOM3-209ENST00000490690 PTPRUQ92729 1446 aa28.19■■■□□ 2.1
SHROOM3-209ENST00000490690 TRPM1Q7Z4N2 1603 aa28.19■■■□□ 2.1
SHROOM3-209ENST00000490690 ASXL1Q8IXJ9 1541 aa28.18■■■□□ 2.1
SHROOM3-209ENST00000490690 XRN1Q8IZH2 1706 aaKnown RBP28.18■■■□□ 2.1
SHROOM3-209ENST00000490690 PROSER2Q86WR7 435 aaPredicted RBP28.17■■■□□ 2.1
SHROOM3-209ENST00000490690 FAM135BQ49AJ0 1406 aa28.17■■■□□ 2.1
SHROOM3-209ENST00000490690 EIF3AQ14152 1382 aaKnown RBP28.16■■■□□ 2.1
SHROOM3-209ENST00000490690 LTBP4Q8N2S1 1624 aa28.16■■■□□ 2.1
SHROOM3-209ENST00000490690 DLC1Q96QB1 1528 aa28.16■■■□□ 2.1
SHROOM3-209ENST00000490690 CARD11Q9BXL7 1154 aa28.15■■■□□ 2.1
SHROOM3-209ENST00000490690 STK26Q9P289 416 aa28.15■■■□□ 2.1
SHROOM3-209ENST00000490690 NBPF1Q3BBV0 1214 aa28.14■■■□□ 2.1
SHROOM3-209ENST00000490690 KNDC1Q76NI1 1749 aa28.14■■■□□ 2.1
SHROOM3-209ENST00000490690 IQSEC2Q5JU85 1478 aa28.14■■■□□ 2.09
SHROOM3-209ENST00000490690 LRRC7Q96NW7 1537 aa28.11■■■□□ 2.09
SHROOM3-209ENST00000490690 TRAK1Q9UPV9 953 aa28.1■■■□□ 2.09
SHROOM3-209ENST00000490690 TMEM94Q12767 1356 aa28.1■■■□□ 2.09
SHROOM3-209ENST00000490690 POGKQ9P215 609 aa28.09■■■□□ 2.09
SHROOM3-209ENST00000490690 ROBO2Q9HCK4 1378 aa28.09■■■□□ 2.09
SHROOM3-209ENST00000490690 SLC24A1O60721 1099 aa28.07■■■□□ 2.08
SHROOM3-209ENST00000490690 C14orf37Q86TY3 774 aa28.07■■■□□ 2.08
SHROOM3-209ENST00000490690 STRCP1A6NGW2 1772 aa28.06■■■□□ 2.08
SHROOM3-209ENST00000490690 MSH6P52701 1360 aa28.05■■■□□ 2.08
SHROOM3-209ENST00000490690 CERKQ8TCT0 537 aa28.05■■■□□ 2.08
SHROOM3-209ENST00000490690 PRAM1Q96QH2 718 aa28.04■■■□□ 2.08
SHROOM3-209ENST00000490690 C19orf44Q9H6X5 657 aa28.03■■■□□ 2.08
SHROOM3-209ENST00000490690 DCCP43146 1447 aa28.01■■■□□ 2.08
SHROOM3-209ENST00000490690 ADGRL3Q9HAR2 1447 aa28.01■■■□□ 2.08
SHROOM3-209ENST00000490690 CENPJQ9HC77 1338 aaPredicted RBP28.01■■■□□ 2.07
SHROOM3-209ENST00000490690 WAPLQ7Z5K2 1190 aa27.98■■■□□ 2.07
SHROOM3-209ENST00000490690 CADPS2Q86UW7 1296 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms