RNA–Protein interactions for RNA: ENST00000490391.1

PDLIM1-203, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 458 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-203ENST00000490391 MED14O60244 1454 aa12.12□□□□□ -0.47
PDLIM1-203ENST00000490391 CLIP1P30622 1438 aa12.11□□□□□ -0.47
PDLIM1-203ENST00000490391 FMN1Q68DA7 1419 aa12.11□□□□□ -0.47
PDLIM1-203ENST00000490391 SYNMO15061 1565 aa12.1□□□□□ -0.47
PDLIM1-203ENST00000490391 CDC42BPAQ5VT25 1732 aa12.1□□□□□ -0.47
PDLIM1-203ENST00000490391 DEPDC5O75140 1603 aa12.1□□□□□ -0.47
PDLIM1-203ENST00000490391 ATP7AQ04656 1500 aa12.1□□□□□ -0.47
PDLIM1-203ENST00000490391 INO80Q9ULG1 1556 aaPredicted RBP12.09□□□□□ -0.47
PDLIM1-203ENST00000490391 A2MP01023 1474 aa12.09□□□□□ -0.47
PDLIM1-203ENST00000490391 PLEKHG5O94827 1062 aa12.09□□□□□ -0.47
PDLIM1-203ENST00000490391 NPHP4O75161 1426 aaPredicted RBP12.09□□□□□ -0.47
PDLIM1-203ENST00000490391 SYCP2Q9BX26 1530 aa12.08□□□□□ -0.48
PDLIM1-203ENST00000490391 TMEM121BQ9BXQ6 578 aaPredicted RBP12.08□□□□□ -0.48
PDLIM1-203ENST00000490391 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.07□□□□□ -0.48
PDLIM1-203ENST00000490391 ATP1B4Q9UN42 357 aaPredicted RBP12.07□□□□□ -0.48
PDLIM1-203ENST00000490391 PCDHB13Q9Y5F0 798 aa12.07□□□□□ -0.48
PDLIM1-203ENST00000490391 SPAG9O60271 1321 aaKnown RBP12.07□□□□□ -0.48
PDLIM1-203ENST00000490391 IQGAP1P46940 1657 aa12.06□□□□□ -0.48
PDLIM1-203ENST00000490391 TNRQ92752 1358 aa12.06□□□□□ -0.48
PDLIM1-203ENST00000490391 GGT6Q6P531 493 aa12.06□□□□□ -0.48
PDLIM1-203ENST00000490391 ANKLE2Q86XL3 938 aa12.06□□□□□ -0.48
PDLIM1-203ENST00000490391 ARHGAP35Q9NRY4 1499 aa12.05□□□□□ -0.48
PDLIM1-203ENST00000490391 PZPP20742 1482 aa12.04□□□□□ -0.48
PDLIM1-203ENST00000490391 FBXO31Q5XUX0 539 aaPredicted RBP12.04□□□□□ -0.48
PDLIM1-203ENST00000490391 MIER1Q8N108 512 aa12.04□□□□□ -0.48
PDLIM1-203ENST00000490391 XIRP1Q702N8 1843 aaKnown RBP12.04□□□□□ -0.48
PDLIM1-203ENST00000490391 ZC3H13Q5T200 1668 aaKnown RBP12.03□□□□□ -0.48
PDLIM1-203ENST00000490391 UGGT1Q9NYU2 1555 aa12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 PLCG2P16885 1265 aa12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 UPF1Q92900 1129 aaKnown RBP eCLIP12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 ADGBQ8N7X0 1667 aa12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 EEA1Q15075 1411 aa12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 FAM135BQ49AJ0 1406 aa12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 KIAA1107Q9UPP5 1409 aa12.02□□□□□ -0.49
PDLIM1-203ENST00000490391 HNRNPMP52272 730 aaKnown RBP eCLIP12.01□□□□□ -0.492e-6■■■■□ 24.1
PDLIM1-203ENST00000490391 THEMISQ8N1K5 641 aaPredicted RBP12.01□□□□□ -0.49
PDLIM1-203ENST00000490391 NLRP1Q9C000 1473 aa12.01□□□□□ -0.49
PDLIM1-203ENST00000490391 MIA2Q96PC5 1412 aa12□□□□□ -0.49
PDLIM1-203ENST00000490391 FAM135AQ9P2D6 1515 aa12□□□□□ -0.49
PDLIM1-203ENST00000490391 GPATCH8Q9UKJ3 1502 aaKnown RBP12□□□□□ -0.49
PDLIM1-203ENST00000490391 SNPHO15079 494 aa11.99□□□□□ -0.49
PDLIM1-203ENST00000490391 IRX5P78411 483 aaPredicted RBP11.99□□□□□ -0.49
PDLIM1-203ENST00000490391 IFNL1Q8IU54 200 aa11.98□□□□□ -0.49
PDLIM1-203ENST00000490391 TMEM106CQ9BVX2 250 aa11.98□□□□□ -0.49
PDLIM1-203ENST00000490391 ZNF777Q9ULD5 760 aaPredicted RBP11.98□□□□□ -0.49
PDLIM1-203ENST00000490391 KDM5DQ9BY66 1539 aa11.97□□□□□ -0.49
PDLIM1-203ENST00000490391 CCDC18Q5T9S5 1454 aa11.96□□□□□ -0.49
PDLIM1-203ENST00000490391 PLEKHH2Q8IVE3 1493 aa11.96□□□□□ -0.49
PDLIM1-203ENST00000490391 ROBO1Q9Y6N7 1651 aa11.96□□□□□ -0.5
PDLIM1-203ENST00000490391 MARVELD3Q96A59 401 aa11.94□□□□□ -0.5
PDLIM1-203ENST00000490391 CASKIN1Q8WXD9 1431 aa11.94□□□□□ -0.5
PDLIM1-203ENST00000490391 DHX29Q7Z478 1369 aaKnown RBP11.93□□□□□ -0.5
PDLIM1-203ENST00000490391 MBD5Q9P267 1494 aa11.92□□□□□ -0.5
PDLIM1-203ENST00000490391 OCEL1Q9H607 264 aa11.91□□□□□ -0.5
PDLIM1-203ENST00000490391 RTEL1-TNFRSF6BF6WH68 1400 aa11.91□□□□□ -0.5
PDLIM1-203ENST00000490391 MAP3K1Q13233 1512 aa11.91□□□□□ -0.5
PDLIM1-203ENST00000490391 SCAF11Q99590 1463 aaKnown RBP11.9□□□□□ -0.5
PDLIM1-203ENST00000490391 LRP6O75581 1613 aa11.9□□□□□ -0.5
PDLIM1-203ENST00000490391 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.9□□□□□ -0.5
PDLIM1-203ENST00000490391 ARHGAP23Q9P227 1491 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 UBR1Q8IWV7 1749 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 KIF3BO15066 747 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 NUBP1P53384 320 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 TMEM94Q12767 1356 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 JCADQ9P266 1359 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 NCOA2Q15596 1464 aa11.89□□□□□ -0.51
PDLIM1-203ENST00000490391 WASHC2CQ9Y4E1 1318 aa11.88□□□□□ -0.51
PDLIM1-203ENST00000490391 CFDP1Q9UEE9 299 aaPredicted RBP11.88□□□□□ -0.51
PDLIM1-203ENST00000490391 LRRC9Q6ZRR7 1453 aa11.88□□□□□ -0.51
PDLIM1-203ENST00000490391 SLIT1O75093 1534 aa11.87□□□□□ -0.51
PDLIM1-203ENST00000490391 PHLPP1O60346 1717 aa11.87□□□□□ -0.51
PDLIM1-203ENST00000490391 LTKP29376 864 aa11.87□□□□□ -0.51
PDLIM1-203ENST00000490391 TRIM52Q96A61 297 aa11.87□□□□□ -0.51
PDLIM1-203ENST00000490391 ZNF644Q9H582 1327 aaPredicted RBP11.86□□□□□ -0.51
PDLIM1-203ENST00000490391 COL16A1Q07092 1604 aaPredicted RBP11.86□□□□□ -0.51
PDLIM1-203ENST00000490391 ERVK-7P63135 1459 aa11.86□□□□□ -0.51
PDLIM1-203ENST00000490391 CDK12Q9NYV4 1490 aaPredicted RBP11.86□□□□□ -0.51
PDLIM1-203ENST00000490391 EP400Q96L91 3159 aa11.86□□□□□ -0.51
PDLIM1-203ENST00000490391 PLCD3Q8N3E9 789 aa11.85□□□□□ -0.51
PDLIM1-203ENST00000490391 ABCC3O15438 1527 aa11.85□□□□□ -0.51
PDLIM1-203ENST00000490391 FYCO1Q9BQS8 1478 aa11.84□□□□□ -0.51
PDLIM1-203ENST00000490391 CCNB3Q8WWL7 1395 aa11.84□□□□□ -0.51
PDLIM1-203ENST00000490391 UBTFP17480 764 aaKnown RBP11.84□□□□□ -0.51
PDLIM1-203ENST00000490391 ZNF772Q68DY9 489 aaPredicted RBP11.84□□□□□ -0.51
PDLIM1-203ENST00000490391 ZBTB47Q9UFB7 747 aaPredicted RBP11.83□□□□□ -0.52
PDLIM1-203ENST00000490391 TIAM1Q13009 1591 aa11.82□□□□□ -0.52
PDLIM1-203ENST00000490391 PRDM15P57071 1507 aaPredicted RBP11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 FGD6Q6ZV73 1430 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 EMP3P54852 163 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 TXNDC2Q86VQ3 553 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 FAM212AQ96EL1 285 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 KRTAP3-3Q9BYR6 98 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 KRTAP3-2Q9BYR7 98 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 CAMSAP2Q08AD1 1489 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 SPATA31A6Q5VVP1 1343 aa11.81□□□□□ -0.52
PDLIM1-203ENST00000490391 NWD1Q149M9 1564 aa11.8□□□□□ -0.52
PDLIM1-203ENST00000490391 RBM33Q96EV2 1170 aaKnown RBP11.8□□□□□ -0.52
PDLIM1-203ENST00000490391 EHMT2Q96KQ7 1210 aa11.8□□□□□ -0.52
PDLIM1-203ENST00000490391 MROH1Q8NDA8 1641 aa11.79□□□□□ -0.52
PDLIM1-203ENST00000490391 SHPRHQ149N8 1683 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms