RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.06□□□□□ -0.48
COL9A1-209ENST00000489861 C8orf37Q96NL8 207 aa12.06□□□□□ -0.48
COL9A1-209ENST00000489861 CCDC141Q6ZP82 1450 aa12.06□□□□□ -0.48
COL9A1-209ENST00000489861 FYCO1Q9BQS8 1478 aa12.06□□□□□ -0.48
COL9A1-209ENST00000489861 EFCAB6Q5THR3 1501 aa12.02□□□□□ -0.48
COL9A1-209ENST00000489861 BRINP3Q76B58 766 aa12.02□□□□□ -0.49
COL9A1-209ENST00000489861 PIAS4Q8N2W9 510 aaPredicted RBP12.02□□□□□ -0.49
COL9A1-209ENST00000489861 NGLY1Q96IV0 654 aa12.02□□□□□ -0.49
COL9A1-209ENST00000489861 SETD5Q9C0A6 1442 aa12.01□□□□□ -0.49
COL9A1-209ENST00000489861 EIF2AK4Q9P2K8 1649 aaKnown RBP12□□□□□ -0.49
COL9A1-209ENST00000489861 CCDC125Q86Z20 511 aa12□□□□□ -0.49
COL9A1-209ENST00000489861 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
COL9A1-209ENST00000489861 ARHGAP31Q2M1Z3 1444 aa11.99□□□□□ -0.49
COL9A1-209ENST00000489861 NHSL1Q5SYE7 1610 aa11.99□□□□□ -0.49
COL9A1-209ENST00000489861 NCOA3Q9Y6Q9 1424 aa11.98□□□□□ -0.49
COL9A1-209ENST00000489861 MTUS2Q5JR59 1369 aa11.98□□□□□ -0.49
COL9A1-209ENST00000489861 IDI1Q13907 227 aa11.98□□□□□ -0.49
COL9A1-209ENST00000489861 CADPS2Q86UW7 1296 aa11.98□□□□□ -0.49
COL9A1-209ENST00000489861 PNPLA6Q8IY17 1366 aa11.97□□□□□ -0.49
COL9A1-209ENST00000489861 C14orf37Q86TY3 774 aa11.97□□□□□ -0.49
COL9A1-209ENST00000489861 MYO5BQ9ULV0 1848 aa11.97□□□□□ -0.49
COL9A1-209ENST00000489861 ASXL1Q8IXJ9 1541 aa11.96□□□□□ -0.49
COL9A1-209ENST00000489861 ATF3P18847 181 aa11.96□□□□□ -0.49
COL9A1-209ENST00000489861 RSPH4AQ5TD94 716 aa11.96□□□□□ -0.49
COL9A1-209ENST00000489861 DEFB132Q7Z7B7 95 aa11.96□□□□□ -0.49
COL9A1-209ENST00000489861 BCANQ96GW7 911 aa11.96□□□□□ -0.49
COL9A1-209ENST00000489861 C19orf44Q9H6X5 657 aa11.96□□□□□ -0.49
COL9A1-209ENST00000489861 ARHGEF5Q12774 1597 aa11.96□□□□□ -0.5
COL9A1-209ENST00000489861 ADAMTS2O95450 1211 aa11.95□□□□□ -0.5
COL9A1-209ENST00000489861 IFFO2Q5TF58 517 aa11.95□□□□□ -0.5
COL9A1-209ENST00000489861 DDX17Q92841 729 aaKnown RBP11.95□□□□□ -0.5
COL9A1-209ENST00000489861 LRRC59Q96AG4 307 aaKnown RBP11.94□□□□□ -0.5
COL9A1-209ENST00000489861 USP21Q9UK80 565 aa11.94□□□□□ -0.5
COL9A1-209ENST00000489861 TRPC5Q9UL62 973 aaPredicted RBP11.94□□□□□ -0.5
COL9A1-209ENST00000489861 ATRNO75882 1429 aa11.94□□□□□ -0.5
COL9A1-209ENST00000489861 ADGRB3O60242 1522 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 BCL9LQ86UU0 1499 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 PSDA5PKW4 1024 aaPredicted RBP11.92□□□□□ -0.5
COL9A1-209ENST00000489861 TSPY4P0CV99 314 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 TSPY10P0CW01 314 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 HRCP23327 699 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 YY1P25490 414 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 BRWD3Q6RI45 1802 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 BLMP54132 1417 aaPredicted RBP11.92□□□□□ -0.5
COL9A1-209ENST00000489861 CEP162Q5TB80 1403 aa11.92□□□□□ -0.5
COL9A1-209ENST00000489861 EHBP1L1Q8N3D4 1523 aa11.91□□□□□ -0.5
COL9A1-209ENST00000489861 ZFYVE9O95405 1425 aa11.91□□□□□ -0.5
COL9A1-209ENST00000489861 PLEKHG1Q9ULL1 1385 aa11.91□□□□□ -0.5
COL9A1-209ENST00000489861 FNBP4Q8N3X1 1017 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-209ENST00000489861 MST1RQ04912 1400 aa11.89□□□□□ -0.51
COL9A1-209ENST00000489861 TBX22Q9Y458 520 aa11.89□□□□□ -0.51
COL9A1-209ENST00000489861 ADAMTS13Q76LX8 1427 aa11.87□□□□□ -0.51
COL9A1-209ENST00000489861 DCCP43146 1447 aa11.86□□□□□ -0.51
COL9A1-209ENST00000489861 DUOX2Q9NRD8 1548 aa11.86□□□□□ -0.51
COL9A1-209ENST00000489861 NOS1P29475 1434 aa11.86□□□□□ -0.51
COL9A1-209ENST00000489861 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.85□□□□□ -0.51
COL9A1-209ENST00000489861 PTPRUQ92729 1446 aa11.85□□□□□ -0.51
COL9A1-209ENST00000489861 RIMS2Q9UQ26 1411 aa11.85□□□□□ -0.51
COL9A1-209ENST00000489861 GCC2Q8IWJ2 1684 aa11.84□□□□□ -0.51
COL9A1-209ENST00000489861 MARF1Q9Y4F3 1742 aaKnown RBP11.84□□□□□ -0.51
COL9A1-209ENST00000489861 GJD4Q96KN9 370 aaPredicted RBP11.84□□□□□ -0.51
COL9A1-209ENST00000489861 PTCH1Q13635 1447 aa11.84□□□□□ -0.51
COL9A1-209ENST00000489861 UNC13BO14795 1591 aa11.84□□□□□ -0.51
COL9A1-209ENST00000489861 PPP1R15AO75807 674 aaPredicted RBP11.83□□□□□ -0.52
COL9A1-209ENST00000489861 GLI3P10071 1580 aa11.83□□□□□ -0.52
COL9A1-209ENST00000489861 LAMC1P11047 1609 aa11.82□□□□□ -0.52
COL9A1-209ENST00000489861 PIK3R4Q99570 1358 aa11.82□□□□□ -0.52
COL9A1-209ENST00000489861 TRPM2O94759 1503 aa11.82□□□□□ -0.52
COL9A1-209ENST00000489861 AMOTL2Q9Y2J4 779 aa11.82□□□□□ -0.52
COL9A1-209ENST00000489861 SPHKAPQ2M3C7 1700 aa11.82□□□□□ -0.52
COL9A1-209ENST00000489861 TMEM131LA2VDJ0 1609 aa11.82□□□□□ -0.52
COL9A1-209ENST00000489861 LMTK2Q8IWU2 1503 aa11.81□□□□□ -0.52
COL9A1-209ENST00000489861 COL22A1Q8NFW1 1626 aaPredicted RBP11.81□□□□□ -0.52
COL9A1-209ENST00000489861 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.8□□□□□ -0.52
COL9A1-209ENST00000489861 SF3B2Q13435 895 aaKnown RBP11.8□□□□□ -0.52
COL9A1-209ENST00000489861 SLC52A1Q9NWF4 448 aa11.8□□□□□ -0.52
COL9A1-209ENST00000489861 XRN1Q8IZH2 1706 aaKnown RBP11.8□□□□□ -0.52
COL9A1-209ENST00000489861 RALGAPBQ86X10 1494 aa11.79□□□□□ -0.52
COL9A1-209ENST00000489861 ADRA2BP18089 450 aa11.79□□□□□ -0.52
COL9A1-209ENST00000489861 SOS2Q07890 1332 aaPredicted RBP11.79□□□□□ -0.52
COL9A1-209ENST00000489861 KIF15Q9NS87 1388 aa11.79□□□□□ -0.52
COL9A1-209ENST00000489861 ERBINQ96RT1 1412 aa11.78□□□□□ -0.52
COL9A1-209ENST00000489861 NALCNQ8IZF0 1738 aa11.78□□□□□ -0.52
COL9A1-209ENST00000489861 R3HDM1Q15032 1099 aaKnown RBP11.78□□□□□ -0.52
COL9A1-209ENST00000489861 KANK1Q14678 1352 aa11.78□□□□□ -0.52
COL9A1-209ENST00000489861 MYOM2P54296 1465 aa11.77□□□□□ -0.52
COL9A1-209ENST00000489861 SENP3-EIF4A1A0A087X0R7 540 aa11.76□□□□□ -0.53
COL9A1-209ENST00000489861 HDGFP51858 240 aaKnown RBP11.76□□□□□ -0.53
COL9A1-209ENST00000489861 RRP7BPQ9NSQ0 103 aa11.76□□□□□ -0.53
COL9A1-209ENST00000489861 C1orf167Q5SNV9 1468 aa11.76□□□□□ -0.53
COL9A1-209ENST00000489861 ADGRL3Q9HAR2 1447 aa11.75□□□□□ -0.53
COL9A1-209ENST00000489861 SEPT12Q8IYM1 358 aa11.74□□□□□ -0.53
COL9A1-209ENST00000489861 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.74□□□□□ -0.53
COL9A1-209ENST00000489861 ORAI2Q96SN7 254 aa11.74□□□□□ -0.53
COL9A1-209ENST00000489861 NRXN3Q9Y4C0 1643 aa11.74□□□□□ -0.53
COL9A1-209ENST00000489861 CROCC2H7BZ55 1655 aa11.73□□□□□ -0.53
COL9A1-209ENST00000489861 BAG6P46379 1132 aa11.73□□□□□ -0.53
COL9A1-209ENST00000489861 EN1Q05925 392 aaPredicted RBP11.73□□□□□ -0.53
COL9A1-209ENST00000489861 CAMTA1Q9Y6Y1 1673 aa11.72□□□□□ -0.53
COL9A1-209ENST00000489861 CEP350Q5VT06 3117 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms