RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 MYOM3Q5VTT5 1437 aa14.66□□□□□ -0.06
COL17A1-207ENST00000488320 FGD6Q6ZV73 1430 aa14.66□□□□□ -0.06
COL17A1-207ENST00000488320 COL16A1Q07092 1604 aaPredicted RBP14.66□□□□□ -0.06
COL17A1-207ENST00000488320 KDM5AP29375 1690 aaKnown RBP14.66□□□□□ -0.06
COL17A1-207ENST00000488320 ATF3P18847 181 aa14.66□□□□□ -0.06
COL17A1-207ENST00000488320 NWD1Q149M9 1564 aa14.65□□□□□ -0.06
COL17A1-207ENST00000488320 CADPS2Q86UW7 1296 aa14.65□□□□□ -0.06
COL17A1-207ENST00000488320 SLC52A1Q9NWF4 448 aa14.65□□□□□ -0.06
COL17A1-207ENST00000488320 ERBINQ96RT1 1412 aa14.65□□□□□ -0.06
COL17A1-207ENST00000488320 CHD2O14647 1828 aaKnown RBP14.64□□□□□ -0.07
COL17A1-207ENST00000488320 FOXD1Q16676 465 aa14.63□□□□□ -0.07
COL17A1-207ENST00000488320 NUTM2DQ5VT03 806 aaPredicted RBP14.63□□□□□ -0.07
COL17A1-207ENST00000488320 C19orf44Q9H6X5 657 aa14.63□□□□□ -0.07
COL17A1-207ENST00000488320 AFF2P51816 1311 aa14.63□□□□□ -0.07
COL17A1-207ENST00000488320 SHPRHQ149N8 1683 aa14.61□□□□□ -0.07
COL17A1-207ENST00000488320 QTRT2Q9H974 415 aaKnown RBP14.61□□□□□ -0.07
COL17A1-207ENST00000488320 TBX22Q9Y458 520 aa14.61□□□□□ -0.07
COL17A1-207ENST00000488320 ADGRB3O60242 1522 aa14.61□□□□□ -0.07
COL17A1-207ENST00000488320 NCOA3Q9Y6Q9 1424 aa14.6□□□□□ -0.07
COL17A1-207ENST00000488320 CHGAP10645 457 aaKnown RBP14.6□□□□□ -0.07
COL17A1-207ENST00000488320 KANK4Q5T7N3 995 aaPredicted RBP14.6□□□□□ -0.07
COL17A1-207ENST00000488320 CHIC2Q9UKJ5 165 aa14.6□□□□□ -0.07
COL17A1-207ENST00000488320 CDK12Q9NYV4 1490 aaPredicted RBP14.6□□□□□ -0.07
COL17A1-207ENST00000488320 PLEKHG1Q9ULL1 1385 aa14.6□□□□□ -0.07
COL17A1-207ENST00000488320 RBM6P78332 1123 aaKnown RBP14.59□□□□□ -0.07
COL17A1-207ENST00000488320 C8orf37Q96NL8 207 aa14.59□□□□□ -0.07
COL17A1-207ENST00000488320 AHDC1Q5TGY3 1603 aaPredicted RBP14.59□□□□□ -0.07
COL17A1-207ENST00000488320 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.58□□□□□ -0.07
COL17A1-207ENST00000488320 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL17A1-207ENST00000488320 ABCC5O15440 1437 aa14.58□□□□□ -0.08
COL17A1-207ENST00000488320 NOS1P29475 1434 aa14.58□□□□□ -0.08
COL17A1-207ENST00000488320 RIMS2Q9UQ26 1411 aa14.58□□□□□ -0.08
COL17A1-207ENST00000488320 BRINP3Q76B58 766 aa14.57□□□□□ -0.08
COL17A1-207ENST00000488320 LMTK2Q8IWU2 1503 aa14.56□□□□□ -0.08
COL17A1-207ENST00000488320 MYO5BQ9ULV0 1848 aa14.56□□□□□ -0.08
COL17A1-207ENST00000488320 LRRC59Q96AG4 307 aaKnown RBP14.55□□□□□ -0.08
COL17A1-207ENST00000488320 ZRANB1Q9UGI0 708 aa14.55□□□□□ -0.08
COL17A1-207ENST00000488320 ANKRD30AQ9BXX3 1397 aa14.55□□□□□ -0.08
COL17A1-207ENST00000488320 NGLY1Q96IV0 654 aa14.54□□□□□ -0.08
COL17A1-207ENST00000488320 AMOTL2Q9Y2J4 779 aa14.54□□□□□ -0.08
COL17A1-207ENST00000488320 ZFYVE9O95405 1425 aa14.54□□□□□ -0.08
COL17A1-207ENST00000488320 CROCC2H7BZ55 1655 aa14.54□□□□□ -0.08
COL17A1-207ENST00000488320 RGS12O14924 1447 aa14.53□□□□□ -0.08
COL17A1-207ENST00000488320 DAPK1P53355 1430 aa14.53□□□□□ -0.08
COL17A1-207ENST00000488320 GCC2Q8IWJ2 1684 aa14.52□□□□□ -0.09
COL17A1-207ENST00000488320 DIP2AQ14689 1571 aa14.51□□□□□ -0.09
COL17A1-207ENST00000488320 VPS8Q8N3P4 1428 aa14.51□□□□□ -0.09
COL17A1-207ENST00000488320 PTPN23Q9H3S7 1636 aa14.51□□□□□ -0.09
COL17A1-207ENST00000488320 ATAD2Q6PL18 1390 aa14.5□□□□□ -0.09
COL17A1-207ENST00000488320 ADAMTS2O95450 1211 aa14.5□□□□□ -0.09
COL17A1-207ENST00000488320 SETD5Q9C0A6 1442 aa14.49□□□□□ -0.09
COL17A1-207ENST00000488320 PIK3R4Q99570 1358 aa14.49□□□□□ -0.09
COL17A1-207ENST00000488320 APLP2Q06481 763 aa14.49□□□□□ -0.09
COL17A1-207ENST00000488320 SRCAPQ6ZRS2 3230 aa14.49□□□□□ -0.09
COL17A1-207ENST00000488320 DDX17Q92841 729 aaKnown RBP14.48□□□□□ -0.09
COL17A1-207ENST00000488320 ADAMTS13Q76LX8 1427 aa14.48□□□□□ -0.09
COL17A1-207ENST00000488320 TMEM131LA2VDJ0 1609 aa14.48□□□□□ -0.09
COL17A1-207ENST00000488320 RPRD2Q5VT52 1461 aaKnown RBP14.47□□□□□ -0.09
COL17A1-207ENST00000488320 USP21Q9UK80 565 aa14.47□□□□□ -0.09
COL17A1-207ENST00000488320 ASXL1Q8IXJ9 1541 aa14.46□□□□□ -0.09
COL17A1-207ENST00000488320 TRPC5Q9UL62 973 aaPredicted RBP14.45□□□□□ -0.1
COL17A1-207ENST00000488320 TRPM2O94759 1503 aa14.45□□□□□ -0.1
COL17A1-207ENST00000488320 PNPLA6Q8IY17 1366 aa14.45□□□□□ -0.1
COL17A1-207ENST00000488320 DCCP43146 1447 aa14.43□□□□□ -0.1
COL17A1-207ENST00000488320 PTPRUQ92729 1446 aa14.43□□□□□ -0.1
COL17A1-207ENST00000488320 NHSL1Q5SYE7 1610 aa14.43□□□□□ -0.1
COL17A1-207ENST00000488320 MST1RQ04912 1400 aa14.42□□□□□ -0.1
COL17A1-207ENST00000488320 CCDC125Q86Z20 511 aa14.42□□□□□ -0.1
COL17A1-207ENST00000488320 SETBP1Q9Y6X0 1596 aa14.41□□□□□ -0.1
COL17A1-207ENST00000488320 ANKRD50Q9ULJ7 1429 aa14.41□□□□□ -0.1
COL17A1-207ENST00000488320 LOC105371045A0A1W2PR82 267 aa14.4□□□□□ -0.1
COL17A1-207ENST00000488320 FAM50AQ14320 339 aaKnown RBP14.4□□□□□ -0.1
COL17A1-207ENST00000488320 ZNF326Q5BKZ1 582 aaKnown RBP14.39□□□□□ -0.11
COL17A1-207ENST00000488320 FNBP4Q8N3X1 1017 aaPredicted RBP14.37□□□□□ -0.11
COL17A1-207ENST00000488320 UNC13BO14795 1591 aa14.36□□□□□ -0.11
COL17A1-207ENST00000488320 ADGRL2O95490 1459 aa14.36□□□□□ -0.11
COL17A1-207ENST00000488320 E9PCH4 1651 aa14.34□□□□□ -0.11
COL17A1-207ENST00000488320 ORAI2Q96SN7 254 aa14.34□□□□□ -0.11
COL17A1-207ENST00000488320 METP08581 1390 aa14.34□□□□□ -0.11
COL17A1-207ENST00000488320 ATRNO75882 1429 aa14.33□□□□□ -0.11
COL17A1-207ENST00000488320 PTCH1Q13635 1447 aa14.33□□□□□ -0.11
COL17A1-207ENST00000488320 ADGRL3Q9HAR2 1447 aa14.33□□□□□ -0.11
COL17A1-207ENST00000488320 XRN1Q8IZH2 1706 aaKnown RBP14.33□□□□□ -0.12
COL17A1-207ENST00000488320 SF3B2Q13435 895 aaKnown RBP14.33□□□□□ -0.12
COL17A1-207ENST00000488320 SOS2Q07890 1332 aaPredicted RBP14.33□□□□□ -0.12
COL17A1-207ENST00000488320 C1orf167Q5SNV9 1468 aa14.32□□□□□ -0.12
COL17A1-207ENST00000488320 GJD4Q96KN9 370 aaPredicted RBP14.32□□□□□ -0.12
COL17A1-207ENST00000488320 NRXN3Q9Y4C0 1643 aa14.3□□□□□ -0.12
COL17A1-207ENST00000488320 NALCNQ8IZF0 1738 aa14.29□□□□□ -0.12
COL17A1-207ENST00000488320 DEFB132Q7Z7B7 95 aa14.29□□□□□ -0.12
COL17A1-207ENST00000488320 NUP155O75694 1391 aa14.29□□□□□ -0.12
COL17A1-207ENST00000488320 EP400Q96L91 3159 aa14.28□□□□□ -0.12
COL17A1-207ENST00000488320 BLMP54132 1417 aaPredicted RBP14.27□□□□□ -0.12
COL17A1-207ENST00000488320 ESCO1Q5FWF5 840 aa14.26□□□□□ -0.13
COL17A1-207ENST00000488320 BCL9LQ86UU0 1499 aa14.25□□□□□ -0.13
COL17A1-207ENST00000488320 LAMC1P11047 1609 aa14.25□□□□□ -0.13
COL17A1-207ENST00000488320 IQGAP3Q86VI3 1631 aa14.25□□□□□ -0.13
COL17A1-207ENST00000488320 NPHP3Q7Z494 1330 aa14.24□□□□□ -0.13
COL17A1-207ENST00000488320 XPCQ01831 940 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-207ENST00000488320 UNC5CLQ8IV45 518 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 541.6 ms