RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 PZPP20742 1482 aa15.8■□□□□ 0.12
SHROOM3-208ENST00000486758 U2AF1L5P0DN76 240 aaPredicted RBP15.79■□□□□ 0.12
SHROOM3-208ENST00000486758 U2AF1Q01081 240 aaKnown RBP eCLIP15.79■□□□□ 0.12
SHROOM3-208ENST00000486758 RNF123Q5XPI4 1314 aa15.79■□□□□ 0.12
SHROOM3-208ENST00000486758 RAPGEF6Q8TEU7 1601 aa15.79■□□□□ 0.12
SHROOM3-208ENST00000486758 BRD4O60885 1362 aaPredicted RBP15.79■□□□□ 0.12
SHROOM3-208ENST00000486758 TRIM44Q96DX7 344 aaPredicted RBP15.79■□□□□ 0.12
SHROOM3-208ENST00000486758 COG6Q9Y2V7 657 aa15.78■□□□□ 0.12
SHROOM3-208ENST00000486758 ATP10BO94823 1461 aa15.78■□□□□ 0.12
SHROOM3-208ENST00000486758 SOX12O15370 315 aa15.77■□□□□ 0.12
SHROOM3-208ENST00000486758 PPP2R1AP30153 589 aa15.77■□□□□ 0.12
SHROOM3-208ENST00000486758 RSPH6AQ9H0K4 717 aa15.77■□□□□ 0.12
SHROOM3-208ENST00000486758 DISP3Q9P2K9 1392 aa15.77■□□□□ 0.12
SHROOM3-208ENST00000486758 KIAA0556O60303 1618 aa15.77■□□□□ 0.12
SHROOM3-208ENST00000486758 ERCC6L2Q5T890 1561 aa15.77■□□□□ 0.11
SHROOM3-208ENST00000486758 PLEKHH2Q8IVE3 1493 aa15.76■□□□□ 0.11
SHROOM3-208ENST00000486758 KIF14Q15058 1648 aa15.75■□□□□ 0.11
SHROOM3-208ENST00000486758 FTSJ3Q8IY81 847 aaKnown RBP15.75■□□□□ 0.11
SHROOM3-208ENST00000486758 BCAR3O75815 825 aa15.75■□□□□ 0.11
SHROOM3-208ENST00000486758 CFAP53Q96M91 514 aa15.75■□□□□ 0.11
SHROOM3-208ENST00000486758 WASHC2CQ9Y4E1 1318 aa15.74■□□□□ 0.11
SHROOM3-208ENST00000486758 FOXD4L1Q9NU39 408 aa15.74■□□□□ 0.11
SHROOM3-208ENST00000486758 ZBTB7CA1YPR0 619 aa15.74■□□□□ 0.11
SHROOM3-208ENST00000486758 MFAP1P55081 439 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-208ENST00000486758 GOLGA6L3A6NEY3 463 aa15.73■□□□□ 0.11
SHROOM3-208ENST00000486758 L1TD1Q5T7N2 865 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-208ENST00000486758 SLC12A5Q9H2X9 1139 aa15.73■□□□□ 0.11
SHROOM3-208ENST00000486758 PANK1Q8TE04 598 aa15.72■□□□□ 0.11
SHROOM3-208ENST00000486758 GCC2Q8IWJ2 1684 aa15.72■□□□□ 0.11
SHROOM3-208ENST00000486758 SCAPERQ9BY12 1400 aa15.71■□□□□ 0.1
SHROOM3-208ENST00000486758 ERBINQ96RT1 1412 aa15.7■□□□□ 0.1
SHROOM3-208ENST00000486758 NCLP19338 710 aaKnown RBP15.7■□□□□ 0.1
SHROOM3-208ENST00000486758 CCDC141Q6ZP82 1450 aa15.7■□□□□ 0.1
SHROOM3-208ENST00000486758 NUTM2FA1L443 756 aa15.7■□□□□ 0.1
SHROOM3-208ENST00000486758 SPINK5Q9NQ38 1064 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-208ENST00000486758 HSP90AA2PQ14568 343 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-208ENST00000486758 MAPK8IP3Q9UPT6 1336 aa15.68■□□□□ 0.1
SHROOM3-208ENST00000486758 DNMT1P26358 1616 aaKnown RBP15.68■□□□□ 0.1
SHROOM3-208ENST00000486758 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.68■□□□□ 0.1
SHROOM3-208ENST00000486758 ANP32BQ92688 251 aaKnown RBP15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 SHROOM2Q13796 1616 aa15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 MINK1Q8N4C8 1332 aaPredicted RBP15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 CENPJQ9HC77 1338 aaPredicted RBP15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 TPRNQ4KMQ1 711 aa15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 ELL2O00472 640 aaPredicted RBP15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 CABP2Q9NPB3 220 aa15.67■□□□□ 0.1
SHROOM3-208ENST00000486758 DMRT2Q9Y5R5 561 aa15.66■□□□□ 0.1
SHROOM3-208ENST00000486758 FAM43AQ8N2R8 423 aa15.66■□□□□ 0.1
SHROOM3-208ENST00000486758 TESK2Q96S53 571 aa15.66■□□□□ 0.1
SHROOM3-208ENST00000486758 GGNBP2Q9H3C7 697 aa15.65■□□□□ 0.1
SHROOM3-208ENST00000486758 ADGRF5Q8IZF2 1346 aa15.64■□□□□ 0.09
SHROOM3-208ENST00000486758 PER1O15534 1290 aaPredicted RBP15.64■□□□□ 0.09
SHROOM3-208ENST00000486758 SEC24BO95487 1268 aa15.64■□□□□ 0.09
SHROOM3-208ENST00000486758 LRPPRCP42704 1394 aaKnown RBP15.64■□□□□ 0.09
SHROOM3-208ENST00000486758 EIF3AQ14152 1382 aaKnown RBP15.64■□□□□ 0.09
SHROOM3-208ENST00000486758 MTHFSP49914 203 aa15.63■□□□□ 0.09
SHROOM3-208ENST00000486758 SYCP2Q9BX26 1530 aa15.63■□□□□ 0.09
SHROOM3-208ENST00000486758 RAPGEF3O95398 923 aa15.63■□□□□ 0.09
SHROOM3-208ENST00000486758 C8orf34Q49A92 452 aa15.63■□□□□ 0.09
SHROOM3-208ENST00000486758 MYH16Q9H6N6 1097 aa15.62■□□□□ 0.09
SHROOM3-208ENST00000486758 ITPRIPQ8IWB1 547 aa15.62■□□□□ 0.09
SHROOM3-208ENST00000486758 KDM5CP41229 1560 aa15.62■□□□□ 0.09
SHROOM3-208ENST00000486758 HSP90AB1P08238 724 aaKnown RBP15.62■□□□□ 0.09
SHROOM3-208ENST00000486758 HSCBQ8IWL3 235 aa15.61■□□□□ 0.09
SHROOM3-208ENST00000486758 SMC4Q9NTJ3 1288 aa15.61■□□□□ 0.09
SHROOM3-208ENST00000486758 TNNQ9UQP3 1299 aa15.61■□□□□ 0.09
SHROOM3-208ENST00000486758 APBB1O00213 710 aa15.61■□□□□ 0.09
SHROOM3-208ENST00000486758 RALGAPBQ86X10 1494 aa15.6■□□□□ 0.09
SHROOM3-208ENST00000486758 PANK2Q9BZ23 570 aa15.6■□□□□ 0.09
SHROOM3-208ENST00000486758 TCP11L2Q8N4U5 519 aa15.6■□□□□ 0.09
SHROOM3-208ENST00000486758 PLEKHH1Q9ULM0 1364 aa15.6■□□□□ 0.09
SHROOM3-208ENST00000486758 PRAG1Q86YV5 1406 aa15.59■□□□□ 0.09
SHROOM3-208ENST00000486758 FAM135AQ9P2D6 1515 aa15.59■□□□□ 0.09
SHROOM3-208ENST00000486758 IGHDP01880 384 aa15.59■□□□□ 0.09
SHROOM3-208ENST00000486758 TSR2Q969E8 191 aaKnown RBP15.59■□□□□ 0.09
SHROOM3-208ENST00000486758 MBD5Q9P267 1494 aa15.58■□□□□ 0.09
SHROOM3-208ENST00000486758 E9PSI1 815 aa15.58■□□□□ 0.09
SHROOM3-208ENST00000486758 RRAGDQ9NQL2 400 aaPredicted RBP15.58■□□□□ 0.08
SHROOM3-208ENST00000486758 ILDR1Q86SU0 546 aaPredicted RBP15.56■□□□□ 0.08
SHROOM3-208ENST00000486758 TRAPPC8Q9Y2L5 1435 aa15.56■□□□□ 0.08
SHROOM3-208ENST00000486758 DUSP27Q5VZP5 1158 aa15.56■□□□□ 0.08
SHROOM3-208ENST00000486758 C14orf37Q86TY3 774 aa15.55■□□□□ 0.08
SHROOM3-208ENST00000486758 ITSN2Q9NZM3 1697 aa15.55■□□□□ 0.08
SHROOM3-208ENST00000486758 FBLN1P23142 703 aa15.55■□□□□ 0.08
SHROOM3-208ENST00000486758 AMER1Q5JTC6 1135 aaPredicted RBP15.54■□□□□ 0.08
SHROOM3-208ENST00000486758 PARD3Q8TEW0 1356 aa15.53■□□□□ 0.08
SHROOM3-208ENST00000486758 TRAK2O60296 914 aa15.53■□□□□ 0.08
SHROOM3-208ENST00000486758 HMOX1P09601 288 aa15.53■□□□□ 0.08
SHROOM3-208ENST00000486758 CGNL1Q0VF96 1302 aa15.53■□□□□ 0.08
SHROOM3-208ENST00000486758 HSPA2P54652 639 aa15.52■□□□□ 0.08
SHROOM3-208ENST00000486758 RWDD1Q9H446 243 aaPredicted RBP15.52■□□□□ 0.08
SHROOM3-208ENST00000486758 SLFN5Q08AF3 891 aa15.52■□□□□ 0.07
SHROOM3-208ENST00000486758 ASXL2Q76L83 1435 aa15.52■□□□□ 0.07
SHROOM3-208ENST00000486758 A2MP01023 1474 aa15.52■□□□□ 0.07
SHROOM3-208ENST00000486758 PDZRN3Q9UPQ7 1066 aa15.52■□□□□ 0.07
SHROOM3-208ENST00000486758 PMFBP1Q8TBY8 1022 aa15.51■□□□□ 0.07
SHROOM3-208ENST00000486758 CD109Q6YHK3 1445 aa15.5■□□□□ 0.07
SHROOM3-208ENST00000486758 TBC1D2Q9BYX2 928 aa15.5■□□□□ 0.07
SHROOM3-208ENST00000486758 CFAP65Q6ZU64 1925 aaKnown RBP15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 WWC1Q8IX03 1113 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms