RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 RIMS2Q9UQ26 1411 aa26.47■■□□□ 1.83
COL6A1-204ENST00000486023 ZNF326Q5BKZ1 582 aaKnown RBP26.45■■□□□ 1.82
COL6A1-204ENST00000486023 SLC4A1APQ9BWU0 796 aaKnown RBP26.45■■□□□ 1.82
COL6A1-204ENST00000486023 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.43■■□□□ 1.82
COL6A1-204ENST00000486023 KDM5AP29375 1690 aaKnown RBP26.43■■□□□ 1.82
COL6A1-204ENST00000486023 RBM33Q96EV2 1170 aaKnown RBP26.41■■□□□ 1.82
COL6A1-204ENST00000486023 LRRC7Q96NW7 1537 aa26.39■■□□□ 1.82
COL6A1-204ENST00000486023 TMEM131LA2VDJ0 1609 aa26.39■■□□□ 1.82
COL6A1-204ENST00000486023 KCNA6P17658 529 aa26.39■■□□□ 1.82
COL6A1-204ENST00000486023 ZFYVE9O95405 1425 aa26.39■■□□□ 1.81
COL6A1-204ENST00000486023 FOXD1Q16676 465 aa26.37■■□□□ 1.81
COL6A1-204ENST00000486023 PROSER2Q86WR7 435 aaPredicted RBP26.37■■□□□ 1.81
COL6A1-204ENST00000486023 STRCP1A6NGW2 1772 aa26.37■■□□□ 1.81
COL6A1-204ENST00000486023 PLEKHG1Q9ULL1 1385 aa26.36■■□□□ 1.81
COL6A1-204ENST00000486023 MYO5BQ9ULV0 1848 aa26.36■■□□□ 1.81
COL6A1-204ENST00000486023 HSPA1LP34931 641 aa26.3■■□□□ 1.8
COL6A1-204ENST00000486023 SPHKAPQ2M3C7 1700 aa26.3■■□□□ 1.8
COL6A1-204ENST00000486023 TBX22Q9Y458 520 aa26.29■■□□□ 1.8
COL6A1-204ENST00000486023 TMEM94Q12767 1356 aa26.29■■□□□ 1.8
COL6A1-204ENST00000486023 MPHOSPH9Q99550 1183 aa26.28■■□□□ 1.8
COL6A1-204ENST00000486023 C14orf37Q86TY3 774 aa26.24■■□□□ 1.79
COL6A1-204ENST00000486023 CLTCL1P53675 1640 aa26.24■■□□□ 1.79
COL6A1-204ENST00000486023 SETD5Q9C0A6 1442 aa26.23■■□□□ 1.79
COL6A1-204ENST00000486023 TRPM2O94759 1503 aa26.23■■□□□ 1.79
COL6A1-204ENST00000486023 DISP3Q9P2K9 1392 aa26.22■■□□□ 1.79
COL6A1-204ENST00000486023 ADAMTS13Q76LX8 1427 aa26.22■■□□□ 1.79
COL6A1-204ENST00000486023 AMOTL2Q9Y2J4 779 aa26.2■■□□□ 1.78
COL6A1-204ENST00000486023 RGL3Q3MIN7 710 aa26.19■■□□□ 1.78
COL6A1-204ENST00000486023 ALKQ9UM73 1620 aa26.17■■□□□ 1.78
COL6A1-204ENST00000486023 RAB3GAP2Q9H2M9 1393 aa26.16■■□□□ 1.78
COL6A1-204ENST00000486023 MSH6P52701 1360 aa26.15■■□□□ 1.78
COL6A1-204ENST00000486023 NKTRP30414 1462 aaKnown RBP26.15■■□□□ 1.78
COL6A1-204ENST00000486023 VGFO15240 615 aaPredicted RBP26.14■■□□□ 1.78
COL6A1-204ENST00000486023 NWD1Q149M9 1564 aa26.12■■□□□ 1.77
COL6A1-204ENST00000486023 CCDC144AA2RUR9 1427 aa26.12■■□□□ 1.77
COL6A1-204ENST00000486023 XIRP1Q702N8 1843 aaKnown RBP26.11■■□□□ 1.77
COL6A1-204ENST00000486023 KIF1BO60333 1816 aa26.11■■□□□ 1.77
COL6A1-204ENST00000486023 METP08581 1390 aa26.1■■□□□ 1.77
COL6A1-204ENST00000486023 PIK3R4Q99570 1358 aa26.1■■□□□ 1.77
COL6A1-204ENST00000486023 PTPRUQ92729 1446 aa26.1■■□□□ 1.77
COL6A1-204ENST00000486023 RPGRIP1LQ68CZ1 1315 aa26.1■■□□□ 1.77
COL6A1-204ENST00000486023 ACIN1Q9UKV3 1341 aaKnown RBP26.1■■□□□ 1.77
COL6A1-204ENST00000486023 NEXMIFQ5QGS0 1516 aa26.09■■□□□ 1.77
COL6A1-204ENST00000486023 CHD2O14647 1828 aaKnown RBP26.09■■□□□ 1.77
COL6A1-204ENST00000486023 DIP2AQ14689 1571 aa26.08■■□□□ 1.77
COL6A1-204ENST00000486023 SLAIN2Q9P270 581 aa26.08■■□□□ 1.77
COL6A1-204ENST00000486023 ATF3P18847 181 aa26.06■■□□□ 1.76
COL6A1-204ENST00000486023 SETBP1Q9Y6X0 1596 aa26.04■■□□□ 1.76
COL6A1-204ENST00000486023 C19orf44Q9H6X5 657 aa26.04■■□□□ 1.76
COL6A1-204ENST00000486023 FAM135BQ49AJ0 1406 aa26.02■■□□□ 1.76
COL6A1-204ENST00000486023 NRXN3Q9Y4C0 1643 aa26.02■■□□□ 1.76
COL6A1-204ENST00000486023 ADGRF5Q8IZF2 1346 aa26■■□□□ 1.75
COL6A1-204ENST00000486023 CADPS2Q86UW7 1296 aa26■■□□□ 1.75
COL6A1-204ENST00000486023 ILDR2Q71H61 639 aa25.98■■□□□ 1.75
COL6A1-204ENST00000486023 NCOA3Q9Y6Q9 1424 aa25.97■■□□□ 1.75
COL6A1-204ENST00000486023 SPATA31E1Q6ZUB1 1445 aa25.95■■□□□ 1.74
COL6A1-204ENST00000486023 STK26Q9P289 416 aa25.94■■□□□ 1.74
COL6A1-204ENST00000486023 PHF23Q9BUL5 403 aaPredicted RBP25.93■■□□□ 1.74
COL6A1-204ENST00000486023 ROBO1Q9Y6N7 1651 aa25.93■■□□□ 1.74
COL6A1-204ENST00000486023 ANKRD30BQ9BXX2 1392 aa25.92■■□□□ 1.74
COL6A1-204ENST00000486023 HRCP23327 699 aa25.91■■□□□ 1.74
COL6A1-204ENST00000486023 TMEM132EQ6IEE7 984 aa25.91■■□□□ 1.74
COL6A1-204ENST00000486023 PPLO60437 1756 aa25.89■■□□□ 1.73
COL6A1-204ENST00000486023 XRN1Q8IZH2 1706 aaKnown RBP25.88■■□□□ 1.73
COL6A1-204ENST00000486023 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.88■■□□□ 1.73
COL6A1-204ENST00000486023 ROBO2Q9HCK4 1378 aa25.87■■□□□ 1.73
COL6A1-204ENST00000486023 MED1Q15648 1581 aaPredicted RBP25.86■■□□□ 1.73
COL6A1-204ENST00000486023 KDM2AQ9Y2K7 1162 aa25.86■■□□□ 1.73
COL6A1-204ENST00000486023 BRINP3Q76B58 766 aa25.85■■□□□ 1.73
COL6A1-204ENST00000486023 CFAP70Q5T0N1 1121 aa25.82■■□□□ 1.72
COL6A1-204ENST00000486023 WAPLQ7Z5K2 1190 aa25.82■■□□□ 1.72
COL6A1-204ENST00000486023 ADGRL3Q9HAR2 1447 aa25.81■■□□□ 1.72
COL6A1-204ENST00000486023 DCAF11Q8TEB1 546 aa25.81■■□□□ 1.72
COL6A1-204ENST00000486023 DCCP43146 1447 aa25.79■■□□□ 1.72
COL6A1-204ENST00000486023 PTCH1Q13635 1447 aa25.79■■□□□ 1.72
COL6A1-204ENST00000486023 DDX17Q92841 729 aaKnown RBP25.78■■□□□ 1.72
COL6A1-204ENST00000486023 PIK3C2GO75747 1445 aa25.78■■□□□ 1.72
COL6A1-204ENST00000486023 MST1RQ04912 1400 aa25.78■■□□□ 1.72
COL6A1-204ENST00000486023 SETD1AO15047 1707 aaKnown RBP25.77■■□□□ 1.72
COL6A1-204ENST00000486023 C14orf93Q9H972 538 aaKnown RBP25.77■■□□□ 1.72
COL6A1-204ENST00000486023 PHLPP1O60346 1717 aa25.77■■□□□ 1.72
COL6A1-204ENST00000486023 JCADQ9P266 1359 aa25.75■■□□□ 1.71
COL6A1-204ENST00000486023 NUTM2FA1L443 756 aa25.75■■□□□ 1.71
COL6A1-204ENST00000486023 LRPPRCP42704 1394 aaKnown RBP25.74■■□□□ 1.71
COL6A1-204ENST00000486023 ORAI2Q96SN7 254 aa25.73■■□□□ 1.71
COL6A1-204ENST00000486023 IFT172Q9UG01 1749 aa25.73■■□□□ 1.71
COL6A1-204ENST00000486023 SAFB2Q14151 953 aaKnown RBP eCLIP25.72■■□□□ 1.71
COL6A1-204ENST00000486023 NALCNQ8IZF0 1738 aa25.71■■□□□ 1.71
COL6A1-204ENST00000486023 DHX57Q6P158 1386 aaKnown RBP25.71■■□□□ 1.71
COL6A1-204ENST00000486023 PLEKHH1Q9ULM0 1364 aa25.71■■□□□ 1.71
COL6A1-204ENST00000486023 YTHDC2Q9H6S0 1430 aaKnown RBP25.71■■□□□ 1.71
COL6A1-204ENST00000486023 ABCC11Q96J66 1382 aa25.7■■□□□ 1.71
COL6A1-204ENST00000486023 NUTM2BA6NNL0 878 aaPredicted RBP25.7■■□□□ 1.7
COL6A1-204ENST00000486023 NUTM2EB1AL46 878 aaPredicted RBP25.7■■□□□ 1.7
COL6A1-204ENST00000486023 NUTM2AQ8IVF1 878 aaPredicted RBP25.7■■□□□ 1.7
COL6A1-204ENST00000486023 ASXL1Q8IXJ9 1541 aa25.69■■□□□ 1.7
COL6A1-204ENST00000486023 C1orf167Q5SNV9 1468 aa25.69■■□□□ 1.7
COL6A1-204ENST00000486023 MYOM2P54296 1465 aa25.68■■□□□ 1.7
COL6A1-204ENST00000486023 ESCO1Q5FWF5 840 aa25.68■■□□□ 1.7
COL6A1-204ENST00000486023 MEX3CQ5U5Q3 659 aaKnown RBP25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms