RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 IQSEC2Q5JU85 1478 aa10.68□□□□□ -0.7
VPS50-218ENST00000485994 LTBP4Q8N2S1 1624 aa10.67□□□□□ -0.7
VPS50-218ENST00000485994 PPARGC1BQ86YN6 1023 aaKnown RBP10.67□□□□□ -0.7
VPS50-218ENST00000485994 RPRD2Q5VT52 1461 aaKnown RBP10.67□□□□□ -0.7
VPS50-218ENST00000485994 NOS1P29475 1434 aa10.67□□□□□ -0.7
VPS50-218ENST00000485994 PRKAR2AP13861 404 aaKnown RBP10.66□□□□□ -0.7
VPS50-218ENST00000485994 IDI1Q13907 227 aa10.66□□□□□ -0.7
VPS50-218ENST00000485994 CLEC11AQ9Y240 323 aa10.65□□□□□ -0.7
VPS50-218ENST00000485994 KDM5AP29375 1690 aaKnown RBP10.64□□□□□ -0.71
VPS50-218ENST00000485994 ARHGAP23Q9P227 1491 aa10.64□□□□□ -0.71
VPS50-218ENST00000485994 POLR1AO95602 1720 aaPredicted RBP10.64□□□□□ -0.71
VPS50-218ENST00000485994 SLIT1O75093 1534 aa10.63□□□□□ -0.71
VPS50-218ENST00000485994 NEURL4Q96JN8 1562 aa10.63□□□□□ -0.71
VPS50-218ENST00000485994 UBR1Q8IWV7 1749 aa10.63□□□□□ -0.71
VPS50-218ENST00000485994 EFCAB6Q5THR3 1501 aa10.63□□□□□ -0.71
VPS50-218ENST00000485994 ZNF335Q9H4Z2 1342 aaPredicted RBP10.62□□□□□ -0.71
VPS50-218ENST00000485994 UNC13BO14795 1591 aa10.62□□□□□ -0.71
VPS50-218ENST00000485994 NPHP4O75161 1426 aaPredicted RBP10.62□□□□□ -0.71
VPS50-218ENST00000485994 LTKP29376 864 aa10.62□□□□□ -0.71
VPS50-218ENST00000485994 TXNDC2Q86VQ3 553 aa10.62□□□□□ -0.71
VPS50-218ENST00000485994 EID1Q9Y6B2 187 aa10.62□□□□□ -0.71
VPS50-218ENST00000485994 TET3O43151 1660 aa10.62□□□□□ -0.71
VPS50-218ENST00000485994 ITGAEP38570 1179 aa10.61□□□□□ -0.71
VPS50-218ENST00000485994 HDGFP51858 240 aaKnown RBP10.61□□□□□ -0.71
VPS50-218ENST00000485994 NUP155O75694 1391 aa10.61□□□□□ -0.71
VPS50-218ENST00000485994 TMEM2Q9UHN6 1383 aa10.61□□□□□ -0.71
VPS50-218ENST00000485994 GCC2Q8IWJ2 1684 aa10.6□□□□□ -0.71
VPS50-218ENST00000485994 STAG3Q9UJ98 1225 aa10.6□□□□□ -0.71
VPS50-218ENST00000485994 IQGAP3Q86VI3 1631 aa10.59□□□□□ -0.71
VPS50-218ENST00000485994 SPDYE2BA6NHP3 402 aa10.59□□□□□ -0.71
VPS50-218ENST00000485994 SPDYE6P0CI01 402 aa10.59□□□□□ -0.71
VPS50-218ENST00000485994 MKRN4PQ13434 485 aaPredicted RBP10.59□□□□□ -0.71
VPS50-218ENST00000485994 SPDYE2Q495Y8 402 aa10.59□□□□□ -0.71
VPS50-218ENST00000485994 SCAF11Q99590 1463 aaKnown RBP10.59□□□□□ -0.71
VPS50-218ENST00000485994 SYNMO15061 1565 aa10.59□□□□□ -0.71
VPS50-218ENST00000485994 ACIN1Q9UKV3 1341 aaKnown RBP10.58□□□□□ -0.71
VPS50-218ENST00000485994 NAIPQ13075 1403 aa10.58□□□□□ -0.72
VPS50-218ENST00000485994 CPS1P31327 1500 aa10.58□□□□□ -0.72
VPS50-218ENST00000485994 PIK3C2BO00750 1634 aa10.58□□□□□ -0.72
VPS50-218ENST00000485994 IQGAP1P46940 1657 aa10.57□□□□□ -0.72
VPS50-218ENST00000485994 C19orf67A6NJJ6 358 aa10.57□□□□□ -0.72
VPS50-218ENST00000485994 CHADLQ6NUI6 762 aa10.57□□□□□ -0.72
VPS50-218ENST00000485994 HFM1A2PYH4 1435 aa10.57□□□□□ -0.72
VPS50-218ENST00000485994 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS50-218ENST00000485994 E9PCH4 1651 aa10.56□□□□□ -0.72
VPS50-218ENST00000485994 GABBR2O75899 941 aa10.55□□□□□ -0.72
VPS50-218ENST00000485994 TOM1O60784 492 aa10.54□□□□□ -0.72
VPS50-218ENST00000485994 KCNA6P17658 529 aa10.54□□□□□ -0.72
VPS50-218ENST00000485994 ADGRB3O60242 1522 aa10.53□□□□□ -0.72
VPS50-218ENST00000485994 ZFYVE9O95405 1425 aa10.53□□□□□ -0.72
VPS50-218ENST00000485994 TBX22Q9Y458 520 aa10.53□□□□□ -0.72
VPS50-218ENST00000485994 TMEM131LA2VDJ0 1609 aa10.53□□□□□ -0.72
VPS50-218ENST00000485994 UBAP1LF5GYI3 381 aa10.52□□□□□ -0.73
VPS50-218ENST00000485994 PLEKHG1Q9ULL1 1385 aa10.52□□□□□ -0.73
VPS50-218ENST00000485994 RIMS2Q9UQ26 1411 aa10.51□□□□□ -0.73
VPS50-218ENST00000485994 STRCP1A6NGW2 1772 aa10.51□□□□□ -0.73
VPS50-218ENST00000485994 MYO5BQ9ULV0 1848 aa10.51□□□□□ -0.73
VPS50-218ENST00000485994 LRRC7Q96NW7 1537 aa10.5□□□□□ -0.73
VPS50-218ENST00000485994 SPDYE1Q8NFV5 336 aaPredicted RBP10.5□□□□□ -0.73
VPS50-218ENST00000485994 TRIM52Q96A61 297 aa10.5□□□□□ -0.73
VPS50-218ENST00000485994 HRCP23327 699 aa10.49□□□□□ -0.73
VPS50-218ENST00000485994 SLC26A8Q96RN1 970 aa10.49□□□□□ -0.73
VPS50-218ENST00000485994 SPHKAPQ2M3C7 1700 aa10.48□□□□□ -0.73
VPS50-218ENST00000485994 CHGAP10645 457 aaKnown RBP10.48□□□□□ -0.73
VPS50-218ENST00000485994 LHX8Q68G74 356 aa10.48□□□□□ -0.73
VPS50-218ENST00000485994 PIK3R4Q99570 1358 aa10.48□□□□□ -0.73
VPS50-218ENST00000485994 PPP1R15AO75807 674 aaPredicted RBP10.47□□□□□ -0.73
VPS50-218ENST00000485994 ZNF692Q9BU19 519 aaPredicted RBP10.47□□□□□ -0.73
VPS50-218ENST00000485994 RPGRIP1LQ68CZ1 1315 aa10.47□□□□□ -0.73
VPS50-218ENST00000485994 NCOA3Q9Y6Q9 1424 aa10.47□□□□□ -0.73
VPS50-218ENST00000485994 CHD2O14647 1828 aaKnown RBP10.47□□□□□ -0.73
VPS50-218ENST00000485994 ATXN8OSP0DMR3 200 aa10.46□□□□□ -0.73
VPS50-218ENST00000485994 SSUH2Q9Y2M2 353 aa10.46□□□□□ -0.73
VPS50-218ENST00000485994 TRPM2O94759 1503 aa10.45□□□□□ -0.74
VPS50-218ENST00000485994 ADAMTS13Q76LX8 1427 aa10.45□□□□□ -0.74
VPS50-218ENST00000485994 PROSER2Q86WR7 435 aaPredicted RBP10.45□□□□□ -0.74
VPS50-218ENST00000485994 BCANQ96GW7 911 aa10.45□□□□□ -0.74
VPS50-218ENST00000485994 MPHOSPH9Q99550 1183 aa10.45□□□□□ -0.74
VPS50-218ENST00000485994 XIRP1Q702N8 1843 aaKnown RBP10.44□□□□□ -0.74
VPS50-218ENST00000485994 SETD5Q9C0A6 1442 aa10.44□□□□□ -0.74
VPS50-218ENST00000485994 VGFO15240 615 aaPredicted RBP10.44□□□□□ -0.74
VPS50-218ENST00000485994 KIF1BO60333 1816 aa10.44□□□□□ -0.74
VPS50-218ENST00000485994 ALKQ9UM73 1620 aa10.44□□□□□ -0.74
VPS50-218ENST00000485994 DIP2AQ14689 1571 aa10.43□□□□□ -0.74
VPS50-218ENST00000485994 NKTRP30414 1462 aaKnown RBP10.43□□□□□ -0.74
VPS50-218ENST00000485994 ZNF326Q5BKZ1 582 aaKnown RBP10.43□□□□□ -0.74
VPS50-218ENST00000485994 NWD1Q149M9 1564 aa10.43□□□□□ -0.74
VPS50-218ENST00000485994 FAM135BQ49AJ0 1406 aa10.42□□□□□ -0.74
VPS50-218ENST00000485994 TMEM94Q12767 1356 aa10.42□□□□□ -0.74
VPS50-218ENST00000485994 CLTCL1P53675 1640 aa10.41□□□□□ -0.74
VPS50-218ENST00000485994 POTEIP0CG38 1075 aa10.41□□□□□ -0.74
VPS50-218ENST00000485994 PIP4K2BP78356 416 aa10.41□□□□□ -0.74
VPS50-218ENST00000485994 NUTM2DQ5VT03 806 aaPredicted RBP10.41□□□□□ -0.74
VPS50-218ENST00000485994 SETBP1Q9Y6X0 1596 aa10.4□□□□□ -0.74
VPS50-218ENST00000485994 HSPA1LP34931 641 aa10.4□□□□□ -0.74
VPS50-218ENST00000485994 C19orf44Q9H6X5 657 aa10.4□□□□□ -0.74
VPS50-218ENST00000485994 AMOTL2Q9Y2J4 779 aa10.4□□□□□ -0.74
VPS50-218ENST00000485994 NEXMIFQ5QGS0 1516 aa10.39□□□□□ -0.75
VPS50-218ENST00000485994 SLAIN2Q9P270 581 aa10.38□□□□□ -0.75
VPS50-218ENST00000485994 PTPRUQ92729 1446 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms