RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 MAP2K5Q13163 448 aa9.92□□□□□ -0.82
VPS41-213ENST00000485955 PLA2G2EQ9NZK7 142 aa9.92□□□□□ -0.82
VPS41-213ENST00000485955 ZMYND10O75800 440 aa9.91□□□□□ -0.82
VPS41-213ENST00000485955 MINK1Q8N4C8 1332 aaPredicted RBP9.9□□□□□ -0.82
VPS41-213ENST00000485955 NYAP1Q6ZVC0 841 aa9.9□□□□□ -0.82
VPS41-213ENST00000485955 SLF2Q8IX21 1173 aa9.9□□□□□ -0.82
VPS41-213ENST00000485955 BCANQ96GW7 911 aa9.9□□□□□ -0.82
VPS41-213ENST00000485955 APLP1P51693 650 aa9.89□□□□□ -0.83
VPS41-213ENST00000485955 SLC10A3P09131 477 aa9.88□□□□□ -0.83
VPS41-213ENST00000485955 BARGINQ6ZT62 677 aa9.88□□□□□ -0.83
VPS41-213ENST00000485955 CCDC102AQ96A19 550 aa9.87□□□□□ -0.83
VPS41-213ENST00000485955 KRI1Q8N9T8 703 aaKnown RBP9.85□□□□□ -0.83
VPS41-213ENST00000485955 DAXXQ9UER7 740 aaPredicted RBP9.85□□□□□ -0.83
VPS41-213ENST00000485955 ITGBL1O95965 494 aaPredicted RBP9.84□□□□□ -0.83
VPS41-213ENST00000485955 SLC4A3P48751 1232 aa9.84□□□□□ -0.83
VPS41-213ENST00000485955 TJAP1Q5JTD0 557 aa9.83□□□□□ -0.84
VPS41-213ENST00000485955 NECTIN2Q92692 538 aa9.81□□□□□ -0.84
VPS41-213ENST00000485955 DDX11L8A8MPP1 907 aa9.8□□□□□ -0.84
VPS41-213ENST00000485955 CFHP08603 1231 aa9.8□□□□□ -0.84
VPS41-213ENST00000485955 MDM2Q00987 491 aaPredicted RBP9.8□□□□□ -0.84
VPS41-213ENST00000485955 IFFO2Q5TF58 517 aa9.8□□□□□ -0.84
VPS41-213ENST00000485955 MTRQ99707 1265 aa9.8□□□□□ -0.84
VPS41-213ENST00000485955 KCNC4Q03721 635 aa9.79□□□□□ -0.84
VPS41-213ENST00000485955 ZNF516Q92618 1163 aa9.79□□□□□ -0.84
VPS41-213ENST00000485955 COPS2P61201 443 aa9.78□□□□□ -0.84
VPS41-213ENST00000485955 REPIN1Q9BWE0 567 aaKnown RBP9.78□□□□□ -0.84
VPS41-213ENST00000485955 RDH13Q8NBN7 331 aa9.77□□□□□ -0.85
VPS41-213ENST00000485955 ACTN4O43707 911 aaKnown RBP9.76□□□□□ -0.85
VPS41-213ENST00000485955 TMUB1Q9BVT8 246 aa9.76□□□□□ -0.85
VPS41-213ENST00000485955 KMT5BQ4FZB7 885 aa9.75□□□□□ -0.85
VPS41-213ENST00000485955 RSPH4AQ5TD94 716 aa9.75□□□□□ -0.85
VPS41-213ENST00000485955 BLOC1S3Q6QNY0 202 aa9.75□□□□□ -0.85
VPS41-213ENST00000485955 PRR14Q9BWN1 585 aa9.75□□□□□ -0.85
VPS41-213ENST00000485955 IL21Q9HBE4 155 aa9.75□□□□□ -0.85
VPS41-213ENST00000485955 PCDHB3Q9Y5E6 796 aa9.75□□□□□ -0.85
VPS41-213ENST00000485955 GCGRP47871 477 aa9.74□□□□□ -0.85
VPS41-213ENST00000485955 SULF1Q8IWU6 871 aa9.74□□□□□ -0.85
VPS41-213ENST00000485955 NKX2-3Q8TAU0 364 aa9.74□□□□□ -0.85
VPS41-213ENST00000485955 SLC24A3Q9HC58 644 aa9.74□□□□□ -0.85
VPS41-213ENST00000485955 TRIM66O15016 1216 aa9.73□□□□□ -0.85
VPS41-213ENST00000485955 GPCPD1Q9NPB8 672 aa9.73□□□□□ -0.85
VPS41-213ENST00000485955 CD46P15529 392 aa9.72□□□□□ -0.85
VPS41-213ENST00000485955 CLCN1P35523 988 aa9.72□□□□□ -0.85
VPS41-213ENST00000485955 PUS10Q3MIT2 529 aaKnown RBP9.72□□□□□ -0.85
VPS41-213ENST00000485955 AK7Q96M32 723 aa9.72□□□□□ -0.85
VPS41-213ENST00000485955 A0A0G2JS52 829 aa9.71□□□□□ -0.86
VPS41-213ENST00000485955 ZPR1O75312 459 aa9.71□□□□□ -0.86
VPS41-213ENST00000485955 FUT2Q10981 343 aa9.71□□□□□ -0.86
VPS41-213ENST00000485955 AMHR2Q16671 573 aa9.71□□□□□ -0.86
VPS41-213ENST00000485955 FAM217BQ9NTX9 383 aaPredicted RBP9.71□□□□□ -0.86
VPS41-213ENST00000485955 SSTR3P32745 418 aaPredicted RBP9.68□□□□□ -0.86
VPS41-213ENST00000485955 TTLL12Q14166 644 aaPredicted RBP9.68□□□□□ -0.86
VPS41-213ENST00000485955 SCUBE3Q8IX30 993 aa9.68□□□□□ -0.86
VPS41-213ENST00000485955 MORN1Q5T089 497 aa9.67□□□□□ -0.86
VPS41-213ENST00000485955 TLL1O43897 1013 aa9.66□□□□□ -0.86
VPS41-213ENST00000485955 ATP6V1AP38606 617 aa9.66□□□□□ -0.86
VPS41-213ENST00000485955 GIGYF2Q6Y7W6 1299 aaKnown RBP9.66□□□□□ -0.86
VPS41-213ENST00000485955 PARP9Q8IXQ6 854 aa9.66□□□□□ -0.86
VPS41-213ENST00000485955 PPP1R18Q6NYC8 613 aa9.65□□□□□ -0.86
VPS41-213ENST00000485955 NR1I2O75469 434 aa9.64□□□□□ -0.87
VPS41-213ENST00000485955 PDE4DQ08499 809 aa9.64□□□□□ -0.87
VPS41-213ENST00000485955 SLC27A5Q9Y2P5 690 aa9.64□□□□□ -0.87
VPS41-213ENST00000485955 KDM4AO75164 1064 aa9.63□□□□□ -0.87
VPS41-213ENST00000485955 HLA-CQ95604 372 aa9.63□□□□□ -0.87
VPS41-213ENST00000485955 MS4A1P11836 297 aa9.61□□□□□ -0.87
VPS41-213ENST00000485955 THAP11Q96EK4 314 aa9.61□□□□□ -0.87
VPS41-213ENST00000485955 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.59□□□□□ -0.87
VPS41-213ENST00000485955 HOXA2O43364 376 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 ADH1BP00325 375 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 GUCA2AQ02747 115 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 GRIPAP1Q4V328 841 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 RNF19BQ6ZMZ0 732 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 NUTM1Q86Y26 1132 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 SPIRE2Q8WWL2 714 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 SPSB2Q99619 263 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 BEGAINQ9BUH8 593 aa9.58□□□□□ -0.88
VPS41-213ENST00000485955 S1PR4O95977 384 aa9.57□□□□□ -0.88
VPS41-213ENST00000485955 USP46P62068 366 aa9.57□□□□□ -0.88
VPS41-213ENST00000485955 BRICD5Q6PL45 260 aa9.57□□□□□ -0.88
VPS41-213ENST00000485955 FAM160A2Q8N612 972 aaPredicted RBP9.57□□□□□ -0.88
VPS41-213ENST00000485955 RNF223E7ERA6 249 aa9.56□□□□□ -0.88
VPS41-213ENST00000485955 PPEF1O14829 653 aaPredicted RBP9.56□□□□□ -0.88
VPS41-213ENST00000485955 RGS20O76081 388 aa9.55□□□□□ -0.88
VPS41-213ENST00000485955 FMNL1O95466 1100 aaPredicted RBP9.55□□□□□ -0.88
VPS41-213ENST00000485955 SALL2Q9Y467 1007 aaPredicted RBP9.55□□□□□ -0.88
VPS41-213ENST00000485955 NDUFV2P19404 249 aa9.54□□□□□ -0.88
VPS41-213ENST00000485955 SLC6A16Q9GZN6 736 aa9.54□□□□□ -0.88
VPS41-213ENST00000485955 MOXD2PA6NHM9 499 aa9.53□□□□□ -0.88
VPS41-213ENST00000485955 GGCXP38435 758 aa9.53□□□□□ -0.88
VPS41-213ENST00000485955 TPRNQ4KMQ1 711 aa9.53□□□□□ -0.88
VPS41-213ENST00000485955 GPBP1L1Q9HC44 474 aaPredicted RBP9.53□□□□□ -0.88
VPS41-213ENST00000485955 PCDHGC3Q9UN70 934 aa9.53□□□□□ -0.88
VPS41-213ENST00000485955 SYMPKQ92797 1274 aaKnown RBP9.52□□□□□ -0.89
VPS41-213ENST00000485955 EMID1Q96A84 441 aaPredicted RBP9.52□□□□□ -0.89
VPS41-213ENST00000485955 TBC1D2Q9BYX2 928 aa9.52□□□□□ -0.89
VPS41-213ENST00000485955 PRKD2Q9BZL6 878 aa9.51□□□□□ -0.89
VPS41-213ENST00000485955 PRDM9Q9NQV7 894 aa9.51□□□□□ -0.89
VPS41-213ENST00000485955 FDX1P10109 184 aa9.5□□□□□ -0.89
VPS41-213ENST00000485955 Q3C1V9 767 aa9.5□□□□□ -0.89
VPS41-213ENST00000485955 USB1Q9BQ65 265 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms