RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 RCCD1A6NED2 376 aa9.02□□□□□ -0.97
VPS50-217ENST00000485140 PXYLP1Q8TE99 480 aa9.02□□□□□ -0.97
VPS50-217ENST00000485140 SULF1Q8IWU6 871 aa9.01□□□□□ -0.97
VPS50-217ENST00000485140 METTL3Q86U44 580 aaKnown RBP9□□□□□ -0.97
VPS50-217ENST00000485140 C3orf80F5H4A9 247 aa8.99□□□□□ -0.97
VPS50-217ENST00000485140 GGCXP38435 758 aa8.99□□□□□ -0.97
VPS50-217ENST00000485140 GPR37O15354 613 aa8.97□□□□□ -0.97
VPS50-217ENST00000485140 MAP2K5Q13163 448 aa8.97□□□□□ -0.97
VPS50-217ENST00000485140 MTRQ99707 1265 aa8.97□□□□□ -0.97
VPS50-217ENST00000485140 DAXXQ9UER7 740 aaPredicted RBP8.97□□□□□ -0.97
VPS50-217ENST00000485140 TJAP1Q5JTD0 557 aa8.96□□□□□ -0.98
VPS50-217ENST00000485140 PCDHB3Q9Y5E6 796 aa8.96□□□□□ -0.98
VPS50-217ENST00000485140 MINK1Q8N4C8 1332 aaPredicted RBP8.96□□□□□ -0.98
VPS50-217ENST00000485140 ACTN4O43707 911 aaKnown RBP8.95□□□□□ -0.98
VPS50-217ENST00000485140 APLP1P51693 650 aa8.95□□□□□ -0.98
VPS50-217ENST00000485140 NR1I2O75469 434 aa8.93□□□□□ -0.98
VPS50-217ENST00000485140 CFHP08603 1231 aa8.93□□□□□ -0.98
VPS50-217ENST00000485140 TMUB1Q9BVT8 246 aa8.93□□□□□ -0.98
VPS50-217ENST00000485140 IRX2Q9BZI1 471 aaPredicted RBP8.92□□□□□ -0.98
VPS50-217ENST00000485140 GRIPAP1Q4V328 841 aa8.91□□□□□ -0.98
VPS50-217ENST00000485140 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS50-217ENST00000485140 ZPR1O75312 459 aa8.9□□□□□ -0.98
VPS50-217ENST00000485140 FAM161AQ3B820 660 aa8.89□□□□□ -0.99
VPS50-217ENST00000485140 IRF6O14896 467 aa8.88□□□□□ -0.99
VPS50-217ENST00000485140 RDH13Q8NBN7 331 aa8.88□□□□□ -0.99
VPS50-217ENST00000485140 LMOD2Q6P5Q4 547 aa8.87□□□□□ -0.99
VPS50-217ENST00000485140 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.87□□□□□ -0.99
VPS50-217ENST00000485140 FECHP22830 423 aa8.86□□□□□ -0.99
VPS50-217ENST00000485140 COPS2P61201 443 aa8.86□□□□□ -0.99
VPS50-217ENST00000485140 LAPTM4AQ15012 233 aa8.86□□□□□ -0.99
VPS50-217ENST00000485140 KRI1Q8N9T8 703 aaKnown RBP8.86□□□□□ -0.99
VPS50-217ENST00000485140 V9GY48 417 aaPredicted RBP8.86□□□□□ -0.99
VPS50-217ENST00000485140 SLC10A3P09131 477 aa8.85□□□□□ -0.99
VPS50-217ENST00000485140 CLCN1P35523 988 aa8.85□□□□□ -0.99
VPS50-217ENST00000485140 DDX11L8A8MPP1 907 aa8.84□□□□□ -0.99
VPS50-217ENST00000485140 USP46P62068 366 aa8.84□□□□□ -0.99
VPS50-217ENST00000485140 ATP6V1AP38606 617 aa8.83□□□□□ -1
VPS50-217ENST00000485140 BLOC1S3Q6QNY0 202 aa8.83□□□□□ -1
VPS50-217ENST00000485140 SALL2Q9Y467 1007 aaPredicted RBP8.83□□□□□ -1
VPS50-217ENST00000485140 ADH1BP00325 375 aa8.82□□□□□ -1
VPS50-217ENST00000485140 GCGRP47871 477 aa8.82□□□□□ -1
VPS50-217ENST00000485140 PPP1R18Q6NYC8 613 aa8.82□□□□□ -1
VPS50-217ENST00000485140 Q3C1V9 767 aa8.81□□□□□ -1
VPS50-217ENST00000485140 ZNF516Q92618 1163 aa8.81□□□□□ -1
VPS50-217ENST00000485140 CCDC102AQ96A19 550 aa8.81□□□□□ -1
VPS50-217ENST00000485140 GPCPD1Q9NPB8 672 aa8.81□□□□□ -1
VPS50-217ENST00000485140 BARGINQ6ZT62 677 aa8.8□□□□□ -1
VPS50-217ENST00000485140 ANKLE1Q8NAG6 615 aa8.79□□□□□ -1
VPS50-217ENST00000485140 ZMYND10O75800 440 aa8.78□□□□□ -1
VPS50-217ENST00000485140 FMNL1O95466 1100 aaPredicted RBP8.78□□□□□ -1
VPS50-217ENST00000485140 SCUBE3Q8IX30 993 aa8.78□□□□□ -1
VPS50-217ENST00000485140 CD46P15529 392 aa8.77□□□□□ -1.01
VPS50-217ENST00000485140 MORN1Q5T089 497 aa8.77□□□□□ -1.01
VPS50-217ENST00000485140 PHOX2BQ99453 314 aa8.77□□□□□ -1.01
VPS50-217ENST00000485140 SLC6A16Q9GZN6 736 aa8.77□□□□□ -1.01
VPS50-217ENST00000485140 MDM2Q00987 491 aaPredicted RBP8.76□□□□□ -1.01
VPS50-217ENST00000485140 PRKD2Q9BZL6 878 aa8.76□□□□□ -1.01
VPS50-217ENST00000485140 KDM4AO75164 1064 aa8.75□□□□□ -1.01
VPS50-217ENST00000485140 FUT2Q10981 343 aa8.75□□□□□ -1.01
VPS50-217ENST00000485140 DIXDC1Q155Q3 683 aa8.75□□□□□ -1.01
VPS50-217ENST00000485140 AMHR2Q16671 573 aa8.75□□□□□ -1.01
VPS50-217ENST00000485140 ZC3H15Q8WU90 426 aaKnown RBP8.75□□□□□ -1.01
VPS50-217ENST00000485140 SPSB2Q99619 263 aa8.75□□□□□ -1.01
VPS50-217ENST00000485140 SLC24A1O60721 1099 aa8.74□□□□□ -1.01
VPS50-217ENST00000485140 NKX2-3Q8TAU0 364 aa8.74□□□□□ -1.01
VPS50-217ENST00000485140 LCE2BO14633 110 aa8.73□□□□□ -1.01
VPS50-217ENST00000485140 BCANQ96GW7 911 aa8.73□□□□□ -1.01
VPS50-217ENST00000485140 RNF223E7ERA6 249 aa8.72□□□□□ -1.01
VPS50-217ENST00000485140 MSS51Q4VC12 460 aa8.72□□□□□ -1.01
VPS50-217ENST00000485140 NUTM1Q86Y26 1132 aa8.72□□□□□ -1.01
VPS50-217ENST00000485140 FAM217BQ9NTX9 383 aaPredicted RBP8.72□□□□□ -1.01
VPS50-217ENST00000485140 TTLL12Q14166 644 aaPredicted RBP8.71□□□□□ -1.02
VPS50-217ENST00000485140 AK7Q96M32 723 aa8.71□□□□□ -1.02
VPS50-217ENST00000485140 TLL1O43897 1013 aa8.7□□□□□ -1.02
VPS50-217ENST00000485140 SLC19A1P41440 591 aa8.7□□□□□ -1.02
VPS50-217ENST00000485140 PUS10Q3MIT2 529 aaKnown RBP8.7□□□□□ -1.02
VPS50-217ENST00000485140 Q6ZNB5 142 aa8.7□□□□□ -1.02
VPS50-217ENST00000485140 SLC27A5Q9Y2P5 690 aa8.7□□□□□ -1.02
VPS50-217ENST00000485140 NRG2O14511 850 aaPredicted RBP8.69□□□□□ -1.02
VPS50-217ENST00000485140 S1PR4O95977 384 aa8.69□□□□□ -1.02
VPS50-217ENST00000485140 BRICD5Q6PL45 260 aa8.69□□□□□ -1.02
VPS50-217ENST00000485140 NLRP7Q8WX94 980 aa8.69□□□□□ -1.02
VPS50-217ENST00000485140 THAP11Q96EK4 314 aa8.69□□□□□ -1.02
VPS50-217ENST00000485140 RPIAP49247 311 aa8.68□□□□□ -1.02
VPS50-217ENST00000485140 HOXA2O43364 376 aa8.66□□□□□ -1.02
VPS50-217ENST00000485140 GJA5P36382 358 aa8.66□□□□□ -1.02
VPS50-217ENST00000485140 ZNF598Q86UK7 904 aaKnown RBP8.66□□□□□ -1.02
VPS50-217ENST00000485140 CD2BP2O95400 341 aaKnown RBP8.65□□□□□ -1.02
VPS50-217ENST00000485140 SSTR3P32745 418 aaPredicted RBP8.65□□□□□ -1.02
VPS50-217ENST00000485140 USB1Q9BQ65 265 aaKnown RBP8.65□□□□□ -1.02
VPS50-217ENST00000485140 SPDYE5A6NIY4 337 aa8.64□□□□□ -1.03
VPS50-217ENST00000485140 ZBTB24O43167 697 aaPredicted RBP8.64□□□□□ -1.03
VPS50-217ENST00000485140 GFRA3O60609 400 aa8.64□□□□□ -1.03
VPS50-217ENST00000485140 PRR20EP86478 221 aa8.63□□□□□ -1.03
VPS50-217ENST00000485140 PRR20CP86479 221 aa8.63□□□□□ -1.03
VPS50-217ENST00000485140 PRR20DP86480 221 aa8.63□□□□□ -1.03
VPS50-217ENST00000485140 PRR20BP86481 221 aa8.63□□□□□ -1.03
VPS50-217ENST00000485140 PRR20AP86496 221 aa8.63□□□□□ -1.03
VPS50-217ENST00000485140 SPRYD7Q5W111 196 aa8.63□□□□□ -1.03
VPS50-217ENST00000485140 PDZRN3Q9UPQ7 1066 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms