RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SEMA3EO15041 775 aa8.83□□□□□ -1
VPS50-216ENST00000484954 ZPR1O75312 459 aa8.83□□□□□ -1
VPS50-216ENST00000484954 SLC19A1P41440 591 aa8.83□□□□□ -1
VPS50-216ENST00000484954 MYT1Q01538 1121 aa8.83□□□□□ -1
VPS50-216ENST00000484954 VSIG10Q8N0Z9 540 aa8.82□□□□□ -1
VPS50-216ENST00000484954 EMID1Q96A84 441 aaPredicted RBP8.82□□□□□ -1
VPS50-216ENST00000484954 TMUB1Q9BVT8 246 aa8.82□□□□□ -1
VPS50-216ENST00000484954 RNF223E7ERA6 249 aa8.81□□□□□ -1
VPS50-216ENST00000484954 SLF2Q8IX21 1173 aa8.81□□□□□ -1
VPS50-216ENST00000484954 FAM187AA6NFU0 413 aa8.79□□□□□ -1
VPS50-216ENST00000484954 PADI6Q6TGC4 694 aa8.79□□□□□ -1
VPS50-216ENST00000484954 PCDHB3Q9Y5E6 796 aa8.79□□□□□ -1
VPS50-216ENST00000484954 PPEF1O14829 653 aaPredicted RBP8.78□□□□□ -1
VPS50-216ENST00000484954 TLL1O43897 1013 aa8.78□□□□□ -1
VPS50-216ENST00000484954 DGAT1O75907 488 aa8.78□□□□□ -1
VPS50-216ENST00000484954 SPRYD7Q5W111 196 aa8.78□□□□□ -1
VPS50-216ENST00000484954 BLOC1S3Q6QNY0 202 aa8.78□□□□□ -1
VPS50-216ENST00000484954 NECTIN2Q92692 538 aa8.78□□□□□ -1
VPS50-216ENST00000484954 TNFRSF10AO00220 468 aa8.77□□□□□ -1.01
VPS50-216ENST00000484954 ZNF598Q86UK7 904 aaKnown RBP8.76□□□□□ -1.01
VPS50-216ENST00000484954 ZNF697Q5TEC3 545 aa8.75□□□□□ -1.01
VPS50-216ENST00000484954 NPDC1Q9NQX5 325 aaPredicted RBP8.75□□□□□ -1.01
VPS50-216ENST00000484954 RBM27Q9P2N5 1060 aaKnown RBP8.75□□□□□ -1.01
VPS50-216ENST00000484954 TESPA1A2RU30 521 aaPredicted RBP8.74□□□□□ -1.01
VPS50-216ENST00000484954 ST8SIA5O15466 376 aa8.74□□□□□ -1.01
VPS50-216ENST00000484954 SLC4A3P48751 1232 aa8.74□□□□□ -1.01
VPS50-216ENST00000484954 LIAT1Q6ZQX7 453 aa8.74□□□□□ -1.01
VPS50-216ENST00000484954 STK17AQ9UEE5 414 aa8.74□□□□□ -1.01
VPS50-216ENST00000484954 S1PR4O95977 384 aa8.73□□□□□ -1.01
VPS50-216ENST00000484954 PRR20EP86478 221 aa8.72□□□□□ -1.01
VPS50-216ENST00000484954 PRR20CP86479 221 aa8.72□□□□□ -1.01
VPS50-216ENST00000484954 PRR20DP86480 221 aa8.72□□□□□ -1.01
VPS50-216ENST00000484954 PRR20BP86481 221 aa8.72□□□□□ -1.01
VPS50-216ENST00000484954 PRR20AP86496 221 aa8.72□□□□□ -1.01
VPS50-216ENST00000484954 TTC13Q8NBP0 860 aa8.72□□□□□ -1.01
VPS50-216ENST00000484954 ANKLE1Q8NAG6 615 aa8.71□□□□□ -1.02
VPS50-216ENST00000484954 GDF9O60383 454 aa8.7□□□□□ -1.02
VPS50-216ENST00000484954 RBM26Q5T8P6 1007 aaKnown RBP8.7□□□□□ -1.02
VPS50-216ENST00000484954 EYA1Q99502 592 aa8.7□□□□□ -1.02
VPS50-216ENST00000484954 PRR14Q9BWN1 585 aa8.7□□□□□ -1.02
VPS50-216ENST00000484954 AAASQ9NRG9 546 aa8.68□□□□□ -1.02
VPS50-216ENST00000484954 NUTM2FA1L443 756 aa8.67□□□□□ -1.02
VPS50-216ENST00000484954 PTGDRQ13258 359 aa8.67□□□□□ -1.02
VPS50-216ENST00000484954 PLA2G2CQ5R387 149 aa8.66□□□□□ -1.02
VPS50-216ENST00000484954 FOXC1Q12948 553 aa8.65□□□□□ -1.02
VPS50-216ENST00000484954 DACH1Q9UI36 760 aa8.65□□□□□ -1.02
VPS50-216ENST00000484954 GPR37O15354 613 aa8.63□□□□□ -1.03
VPS50-216ENST00000484954 KMT5BQ4FZB7 885 aa8.63□□□□□ -1.03
VPS50-216ENST00000484954 ACTN4O43707 911 aaKnown RBP8.62□□□□□ -1.03
VPS50-216ENST00000484954 ADH1BP00325 375 aa8.62□□□□□ -1.03
VPS50-216ENST00000484954 CFHP08603 1231 aa8.62□□□□□ -1.03
VPS50-216ENST00000484954 DNAJB2P25686 324 aa8.62□□□□□ -1.03
VPS50-216ENST00000484954 FAM161AQ3B820 660 aa8.62□□□□□ -1.03
VPS50-216ENST00000484954 WIPF1O43516 503 aa8.61□□□□□ -1.03
VPS50-216ENST00000484954 SLC6A16Q9GZN6 736 aa8.61□□□□□ -1.03
VPS50-216ENST00000484954 WFS1O76024 890 aa8.6□□□□□ -1.03
VPS50-216ENST00000484954 FECHP22830 423 aa8.6□□□□□ -1.03
VPS50-216ENST00000484954 SMYD5Q6GMV2 418 aa8.6□□□□□ -1.03
VPS50-216ENST00000484954 PKD2L1Q9P0L9 805 aa8.6□□□□□ -1.03
VPS50-216ENST00000484954 GMPR2Q9P2T1 348 aaKnown RBP8.6□□□□□ -1.03
VPS50-216ENST00000484954 FCHSD2O94868 740 aa8.59□□□□□ -1.03
VPS50-216ENST00000484954 SUZ12Q15022 739 aaKnown RBP8.59□□□□□ -1.03
VPS50-216ENST00000484954 TMEM134Q9H6X4 195 aa8.58□□□□□ -1.04
VPS50-216ENST00000484954 RCCD1A6NED2 376 aa8.57□□□□□ -1.04
VPS50-216ENST00000484954 C11orf95C9JLR9 678 aaPredicted RBP8.57□□□□□ -1.04
VPS50-216ENST00000484954 NR1I2O75469 434 aa8.57□□□□□ -1.04
VPS50-216ENST00000484954 SLC10A3P09131 477 aa8.57□□□□□ -1.04
VPS50-216ENST00000484954 RBM46Q8TBY0 533 aaKnown RBP8.57□□□□□ -1.04
VPS50-216ENST00000484954 ADGRG1Q9Y653 693 aa8.57□□□□□ -1.04
VPS50-216ENST00000484954 AXIN1O15169 862 aa8.55□□□□□ -1.04
VPS50-216ENST00000484954 PUS10Q3MIT2 529 aaKnown RBP8.55□□□□□ -1.04
VPS50-216ENST00000484954 HIC1Q14526 733 aa8.54□□□□□ -1.04
VPS50-216ENST00000484954 GPIHBP1Q8IV16 184 aa8.54□□□□□ -1.04
VPS50-216ENST00000484954 SCUBE3Q8IX30 993 aa8.54□□□□□ -1.04
VPS50-216ENST00000484954 INSM1Q01101 510 aaPredicted RBP8.53□□□□□ -1.04
VPS50-216ENST00000484954 GNPATO15228 680 aa8.52□□□□□ -1.05
VPS50-216ENST00000484954 NFX1Q12986 1120 aaKnown RBP8.52□□□□□ -1.05
VPS50-216ENST00000484954 CYP4X1Q8N118 509 aa8.52□□□□□ -1.05
VPS50-216ENST00000484954 CRIPAKQ8N1N5 446 aa8.52□□□□□ -1.05
VPS50-216ENST00000484954 SPSB2Q99619 263 aa8.52□□□□□ -1.05
VPS50-216ENST00000484954 AVPP01185 164 aa8.51□□□□□ -1.05
VPS50-216ENST00000484954 LMOD2Q6P5Q4 547 aa8.51□□□□□ -1.05
VPS50-216ENST00000484954 TOR4AQ9NXH8 423 aa8.51□□□□□ -1.05
VPS50-216ENST00000484954 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS50-216ENST00000484954 PXYLP1Q8TE99 480 aa8.49□□□□□ -1.05
VPS50-216ENST00000484954 NLRP7Q8WX94 980 aa8.49□□□□□ -1.05
VPS50-216ENST00000484954 FCF1Q9Y324 198 aaKnown RBP8.49□□□□□ -1.05
VPS50-216ENST00000484954 SLC24A1O60721 1099 aa8.48□□□□□ -1.05
VPS50-216ENST00000484954 METTL3Q86U44 580 aaKnown RBP8.48□□□□□ -1.05
VPS50-216ENST00000484954 TTC24A2A3L6 582 aaPredicted RBP8.47□□□□□ -1.05
VPS50-216ENST00000484954 CD2BP2O95400 341 aaKnown RBP8.47□□□□□ -1.05
VPS50-216ENST00000484954 RPIAP49247 311 aa8.47□□□□□ -1.05
VPS50-216ENST00000484954 LCE2CQ5TA81 110 aa8.47□□□□□ -1.05
VPS50-216ENST00000484954 PHOX2BQ99453 314 aa8.47□□□□□ -1.05
VPS50-216ENST00000484954 CTC1Q2NKJ3 1217 aa8.46□□□□□ -1.06
VPS50-216ENST00000484954 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.45□□□□□ -1.06
VPS50-216ENST00000484954 TULP1O00294 542 aaPredicted RBP8.45□□□□□ -1.06
VPS50-216ENST00000484954 OATP04181 439 aa8.44□□□□□ -1.06
VPS50-216ENST00000484954 SNRPBP14678 240 aaKnown RBP8.44□□□□□ -1.06
VPS50-216ENST00000484954 SMCPP49901 116 aaPredicted RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms