RNA–Protein interactions for RNA: ENST00000481788.1

RBM28-205, Transcript of RNA binding motif protein 28, human

TSL 3

Gene RBM28, Length 1,052 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM28-205	ENST00000481788	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.36	□□□□□ -0.59
RBM28-205	ENST00000481788	C3	P01024	1663 aa		11.36	□□□□□ -0.59
RBM28-205	ENST00000481788	MICALL2	Q8IY33	904 aa		11.35	□□□□□ -0.59
RBM28-205	ENST00000481788	ABCA6	Q8N139	1617 aa		11.35	□□□□□ -0.59
RBM28-205	ENST00000481788	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.35	□□□□□ -0.59
RBM28-205	ENST00000481788	KIF14	Q15058	1648 aa		11.34	□□□□□ -0.59
RBM28-205	ENST00000481788	NPAT	Q14207	1427 aa		11.33	□□□□□ -0.6
RBM28-205	ENST00000481788	TRO	Q12816	1431 aa	Predicted RBP	11.32	□□□□□ -0.6
RBM28-205	ENST00000481788	EEA1	Q15075	1411 aa		11.31	□□□□□ -0.6
RBM28-205	ENST00000481788	CNTLN	Q9NXG0	1405 aa		11.31	□□□□□ -0.6
RBM28-205	ENST00000481788	TCOF1	Q13428	1488 aa	Known RBP	11.31	□□□□□ -0.6
RBM28-205	ENST00000481788	CAMSAP1	Q5T5Y3	1602 aa		11.31	□□□□□ -0.6
RBM28-205	ENST00000481788	MYO5C	Q9NQX4	1742 aa		11.3	□□□□□ -0.6
RBM28-205	ENST00000481788	SNPH	O15079	494 aa		11.3	□□□□□ -0.6
RBM28-205	ENST00000481788	NCKAP5L	Q9HCH0	1330 aa		11.3	□□□□□ -0.6
RBM28-205	ENST00000481788	ARHGAP5	Q13017	1502 aa		11.3	□□□□□ -0.6
RBM28-205	ENST00000481788	UBAP1L	F5GYI3	381 aa		11.29	□□□□□ -0.6
RBM28-205	ENST00000481788	PLA2R1	Q13018	1463 aa		11.29	□□□□□ -0.6
RBM28-205	ENST00000481788	ABCC1	P33527	1531 aa		11.29	□□□□□ -0.6
RBM28-205	ENST00000481788	ARHGAP35	Q9NRY4	1499 aa		11.28	□□□□□ -0.6
RBM28-205	ENST00000481788	NKX1-1	Q15270	411 aa	Predicted RBP	11.28	□□□□□ -0.6
RBM28-205	ENST00000481788	ZMYM3	Q14202	1370 aa		11.28	□□□□□ -0.6
RBM28-205	ENST00000481788	FMN1	Q68DA7	1419 aa		11.27	□□□□□ -0.6
RBM28-205	ENST00000481788	KIDINS220	Q9ULH0	1771 aa		11.26	□□□□□ -0.61
RBM28-205	ENST00000481788	MED1	Q15648	1581 aa	Predicted RBP	11.26	□□□□□ -0.61
RBM28-205	ENST00000481788	PTPRK	Q15262	1439 aa		11.26	□□□□□ -0.61
RBM28-205	ENST00000481788	HSPA1L	P34931	641 aa		11.25	□□□□□ -0.61
RBM28-205	ENST00000481788	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.25	□□□□□ -0.61
RBM28-205	ENST00000481788	CDC42BPB	Q9Y5S2	1711 aa		11.25	□□□□□ -0.61
RBM28-205	ENST00000481788	MROH2A	A6NES4	1674 aa		11.24	□□□□□ -0.61
RBM28-205	ENST00000481788	SAMD9L	Q8IVG5	1584 aa		11.23	□□□□□ -0.61
RBM28-205	ENST00000481788	PREX2	Q70Z35	1606 aa		11.23	□□□□□ -0.61
RBM28-205	ENST00000481788	ALK	Q9UM73	1620 aa		11.23	□□□□□ -0.61
RBM28-205	ENST00000481788	ZNF142	P52746	1687 aa	Predicted RBP	11.23	□□□□□ -0.61
RBM28-205	ENST00000481788	PLXNC1	O60486	1568 aa		11.22	□□□□□ -0.61
RBM28-205	ENST00000481788	CLIP1	P30622	1438 aa		11.22	□□□□□ -0.61
RBM28-205	ENST00000481788	BBX	Q8WY36	941 aa	Predicted RBP	11.22	□□□□□ -0.61
RBM28-205	ENST00000481788	ESF1	Q9H501	851 aa	Known RBP	11.22	□□□□□ -0.61
RBM28-205	ENST00000481788	ITSN2	Q9NZM3	1697 aa		11.22	□□□□□ -0.61
RBM28-205	ENST00000481788	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.22	□□□□□ -0.61
RBM28-205	ENST00000481788	LRRIQ1	Q96JM4	1722 aa		11.21	□□□□□ -0.61
RBM28-205	ENST00000481788	MYO3A	Q8NEV4	1616 aa		11.21	□□□□□ -0.61
RBM28-205	ENST00000481788	PPP1R37	O75864	691 aa		11.21	□□□□□ -0.61
RBM28-205	ENST00000481788	FAM163A	Q96GL9	167 aa	Predicted RBP	11.21	□□□□□ -0.61
RBM28-205	ENST00000481788	MYT1L	Q9UL68	1186 aa		11.2	□□□□□ -0.62
RBM28-205	ENST00000481788	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.19	□□□□□ -0.62
RBM28-205	ENST00000481788	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.19	□□□□□ -0.62
RBM28-205	ENST00000481788	NEURL4	Q96JN8	1562 aa		11.19	□□□□□ -0.62
RBM28-205	ENST00000481788	GTPBP6	O43824	516 aa	Predicted RBP	11.17	□□□□□ -0.62
RBM28-205	ENST00000481788	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.17	□□□□□ -0.62
RBM28-205	ENST00000481788	A2ML1	A8K2U0	1454 aa		11.17	□□□□□ -0.62
RBM28-205	ENST00000481788	CPS1	P31327	1500 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	SYCP2	Q9BX26	1530 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	TMEM92	Q6UXU6	159 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	TMC2	Q8TDI7	906 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	A2M	P01023	1474 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	SHANK2	Q9UPX8	1470 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	KIAA1107	Q9UPP5	1409 aa		11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	DNMT1	P26358	1616 aa	Known RBP	11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	INO80	Q9ULG1	1556 aa	Predicted RBP	11.16	□□□□□ -0.62
RBM28-205	ENST00000481788	SPAG9	O60271	1321 aa	Known RBP	11.15	□□□□□ -0.62
RBM28-205	ENST00000481788	PIP4K2B	P78356	416 aa		11.15	□□□□□ -0.62
RBM28-205	ENST00000481788	DOK7	Q18PE1	504 aa		11.15	□□□□□ -0.62
RBM28-205	ENST00000481788	CASKIN1	Q8WXD9	1431 aa		11.15	□□□□□ -0.62
RBM28-205	ENST00000481788	VWDE	Q8N2E2	1590 aa		11.15	□□□□□ -0.62
RBM28-205	ENST00000481788	ATP7A	Q04656	1500 aa		11.14	□□□□□ -0.63
RBM28-205	ENST00000481788	CLTC	Q00610	1675 aa	Known RBP	11.14	□□□□□ -0.63
RBM28-205	ENST00000481788	TOM1	O60784	492 aa		11.14	□□□□□ -0.63
RBM28-205	ENST00000481788	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
RBM28-205	ENST00000481788	RGS17	Q9UGC6	210 aa	Predicted RBP	11.14	□□□□□ -0.63
RBM28-205	ENST00000481788	CDC42BPA	Q5VT25	1732 aa		11.14	□□□□□ -0.63
RBM28-205	ENST00000481788	RIMBP2	O15034	1052 aa		11.13	□□□□□ -0.63
RBM28-205	ENST00000481788	CCDC18	Q5T9S5	1454 aa		11.12	□□□□□ -0.63
RBM28-205	ENST00000481788	ZNF710	Q8N1W2	664 aa		11.12	□□□□□ -0.63
RBM28-205	ENST00000481788	MED14	O60244	1454 aa		11.12	□□□□□ -0.63
RBM28-205	ENST00000481788	ST18	O60284	1047 aa		11.11	□□□□□ -0.63
RBM28-205	ENST00000481788	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.11	□□□□□ -0.63
RBM28-205	ENST00000481788	GGT6	Q6P531	493 aa		11.11	□□□□□ -0.63
RBM28-205	ENST00000481788	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.11	□□□□□ -0.63
RBM28-205	ENST00000481788	C2orf72	A6NCS6	295 aa		11.1	□□□□□ -0.63
RBM28-205	ENST00000481788	UBTF	P17480	764 aa	Known RBP	11.1	□□□□□ -0.63
RBM28-205	ENST00000481788	MBD5	Q9P267	1494 aa		11.1	□□□□□ -0.63
RBM28-205	ENST00000481788	TNR	Q92752	1358 aa		11.09	□□□□□ -0.63
RBM28-205	ENST00000481788	KIF3C	O14782	793 aa		11.09	□□□□□ -0.63
RBM28-205	ENST00000481788	SPRYD3	Q8NCJ5	442 aa		11.09	□□□□□ -0.63
RBM28-205	ENST00000481788	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.09	□□□□□ -0.63
RBM28-205	ENST00000481788	PLEKHH2	Q8IVE3	1493 aa		11.08	□□□□□ -0.64
RBM28-205	ENST00000481788	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
RBM28-205	ENST00000481788	PZP	P20742	1482 aa		11.07	□□□□□ -0.64
RBM28-205	ENST00000481788	POTEM	A6NI47	508 aa		11.07	□□□□□ -0.64
RBM28-205	ENST00000481788	HOXB3	P14651	431 aa	Predicted RBP	11.07	□□□□□ -0.64
RBM28-205	ENST00000481788	LCE2D	Q5TA82	110 aa	Predicted RBP	11.07	□□□□□ -0.64
RBM28-205	ENST00000481788	LRRC7	Q96NW7	1537 aa		11.07	□□□□□ -0.64
RBM28-205	ENST00000481788	DHX29	Q7Z478	1369 aa	Known RBP	11.06	□□□□□ -0.64
RBM28-205	ENST00000481788	POTEG	Q6S5H5	508 aa		11.06	□□□□□ -0.64
RBM28-205	ENST00000481788	ZSWIM6	Q9HCJ5	1215 aa		11.06	□□□□□ -0.64
RBM28-205	ENST00000481788	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.06	□□□□□ -0.64
RBM28-205	ENST00000481788	NPHP4	O75161	1426 aa	Predicted RBP	11.06	□□□□□ -0.64
RBM28-205	ENST00000481788	ZNF644	Q9H582	1327 aa	Predicted RBP	11.06	□□□□□ -0.64
RBM28-205	ENST00000481788	FYCO1	Q9BQS8	1478 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms