RNA–Protein interactions for RNA: ENST00000481057.1

CBX3-206, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 860 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-206ENST00000481057 CDAN1Q8IWY9 1227 aa13.34□□□□□ -0.27
CBX3-206ENST00000481057 BRPF1P55201 1214 aaPredicted RBP13.33□□□□□ -0.28
CBX3-206ENST00000481057 ANKRD13DQ6ZTN6 518 aa13.33□□□□□ -0.28
CBX3-206ENST00000481057 KIF21AQ7Z4S6 1674 aa13.33□□□□□ -0.28
CBX3-206ENST00000481057 BHMG1C9JSJ3 638 aaPredicted RBP13.32□□□□□ -0.28
CBX3-206ENST00000481057 SEPT9Q9UHD8 586 aaPredicted RBP13.32□□□□□ -0.28
CBX3-206ENST00000481057 HRO43593 1189 aa13.31□□□□□ -0.28
CBX3-206ENST00000481057 NBPF3Q9H094 633 aa13.31□□□□□ -0.28
CBX3-206ENST00000481057 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.3□□□□□ -0.28
CBX3-206ENST00000481057 RCCD1A6NED2 376 aa13.3□□□□□ -0.28
CBX3-206ENST00000481057 NLRP7Q8WX94 980 aa13.3□□□□□ -0.28
CBX3-206ENST00000481057 DNAJB2P25686 324 aa13.29□□□□□ -0.28
CBX3-206ENST00000481057 NEUROD2Q15784 382 aa13.29□□□□□ -0.28
CBX3-206ENST00000481057 PARP9Q8IXQ6 854 aa13.29□□□□□ -0.28
CBX3-206ENST00000481057 ARAP1Q96P48 1450 aa13.29□□□□□ -0.28
CBX3-206ENST00000481057 MDM2Q00987 491 aaPredicted RBP13.28□□□□□ -0.28
CBX3-206ENST00000481057 FBXO41Q8TF61 875 aa13.28□□□□□ -0.28
CBX3-206ENST00000481057 TTLL12Q14166 644 aaPredicted RBP13.27□□□□□ -0.29
CBX3-206ENST00000481057 FAM98CQ17RN3 349 aaKnown RBP13.27□□□□□ -0.29
CBX3-206ENST00000481057 LAPTM4BQ86VI4 370 aa13.27□□□□□ -0.29
CBX3-206ENST00000481057 TMUB1Q9BVT8 246 aa13.27□□□□□ -0.29
CBX3-206ENST00000481057 GPBP1L1Q9HC44 474 aaPredicted RBP13.27□□□□□ -0.29
CBX3-206ENST00000481057 CLCN1P35523 988 aa13.26□□□□□ -0.29
CBX3-206ENST00000481057 TMEM134Q9H6X4 195 aa13.26□□□□□ -0.29
CBX3-206ENST00000481057 PDS5BQ9NTI5 1447 aa13.25□□□□□ -0.29
CBX3-206ENST00000481057 MRPL50Q8N5N7 158 aaKnown RBP13.25□□□□□ -0.29
CBX3-206ENST00000481057 REPIN1Q9BWE0 567 aaKnown RBP13.25□□□□□ -0.29
CBX3-206ENST00000481057 GPCPD1Q9NPB8 672 aa13.25□□□□□ -0.29
CBX3-206ENST00000481057 LAMC3Q9Y6N6 1575 aa13.24□□□□□ -0.29
CBX3-206ENST00000481057 GIGYF2Q6Y7W6 1299 aaKnown RBP13.23□□□□□ -0.29
CBX3-206ENST00000481057 KDM4CQ9H3R0 1056 aa13.23□□□□□ -0.29
CBX3-206ENST00000481057 ILDR2Q71H61 639 aa13.22□□□□□ -0.29
CBX3-206ENST00000481057 WDR62O43379 1518 aa13.21□□□□□ -0.29
CBX3-206ENST00000481057 DAXXQ9UER7 740 aaPredicted RBP13.2□□□□□ -0.3
CBX3-206ENST00000481057 MRC2Q9UBG0 1479 aa13.2□□□□□ -0.3
CBX3-206ENST00000481057 SWT1Q5T5J6 900 aaKnown RBP13.19□□□□□ -0.3
CBX3-206ENST00000481057 ZFRQ96KR1 1074 aaKnown RBP13.19□□□□□ -0.3
CBX3-206ENST00000481057 STAC3Q96MF2 364 aa13.19□□□□□ -0.3
CBX3-206ENST00000481057 FAM217BQ9NTX9 383 aaPredicted RBP13.18□□□□□ -0.3
CBX3-206ENST00000481057 PCDH10Q9P2E7 1040 aa13.17□□□□□ -0.3
CBX3-206ENST00000481057 MS4A1P11836 297 aa13.16□□□□□ -0.3
CBX3-206ENST00000481057 SAMD7Q7Z3H4 446 aa13.16□□□□□ -0.3
CBX3-206ENST00000481057 GOLGA8CPA6NN73 597 aa13.14□□□□□ -0.31
CBX3-206ENST00000481057 SSTR3P32745 418 aaPredicted RBP13.13□□□□□ -0.31
CBX3-206ENST00000481057 HDGFP51858 240 aaKnown RBP13.13□□□□□ -0.31
CBX3-206ENST00000481057 SULF1Q8IWU6 871 aa13.12□□□□□ -0.31
CBX3-206ENST00000481057 ANKK1Q8NFD2 765 aa13.12□□□□□ -0.31
CBX3-206ENST00000481057 DDX11L8A8MPP1 907 aa13.11□□□□□ -0.31
CBX3-206ENST00000481057 ATAD2BQ9ULI0 1458 aa13.1□□□□□ -0.31
CBX3-206ENST00000481057 SLF2Q8IX21 1173 aa13.1□□□□□ -0.31
CBX3-206ENST00000481057 LRCH3Q96II8 777 aa13.1□□□□□ -0.31
CBX3-206ENST00000481057 FAM117AQ9C073 453 aa13.1□□□□□ -0.31
CBX3-206ENST00000481057 CD46P15529 392 aa13.09□□□□□ -0.31
CBX3-206ENST00000481057 ERCC6L2Q5T890 1561 aa13.09□□□□□ -0.31
CBX3-206ENST00000481057 WNT2BQ93097 391 aa13.09□□□□□ -0.31
CBX3-206ENST00000481057 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.09□□□□□ -0.31
CBX3-206ENST00000481057 SLC4A3P48751 1232 aa13.08□□□□□ -0.32
CBX3-206ENST00000481057 DDRGK1Q96HY6 314 aa13.08□□□□□ -0.32
CBX3-206ENST00000481057 HMGXB3Q12766 1538 aa13.08□□□□□ -0.32
CBX3-206ENST00000481057 SOWAHBA6NEL2 793 aa13.07□□□□□ -0.32
CBX3-206ENST00000481057 RNF40O75150 1001 aa13.06□□□□□ -0.32
CBX3-206ENST00000481057 SLC10A3P09131 477 aa13.06□□□□□ -0.32
CBX3-206ENST00000481057 BCAMP50895 628 aa13.06□□□□□ -0.32
CBX3-206ENST00000481057 RDH13Q8NBN7 331 aa13.06□□□□□ -0.32
CBX3-206ENST00000481057 BEGAINQ9BUH8 593 aa13.06□□□□□ -0.32
CBX3-206ENST00000481057 PLEKHG3A1L390 1219 aa13.05□□□□□ -0.32
CBX3-206ENST00000481057 RSPH4AQ5TD94 716 aa13.03□□□□□ -0.32
CBX3-206ENST00000481057 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
CBX3-206ENST00000481057 KCTD12Q96CX2 325 aaKnown RBP13.03□□□□□ -0.32
CBX3-206ENST00000481057 THSD4Q6ZMP0 1018 aa13.02□□□□□ -0.33
CBX3-206ENST00000481057 MYT1LQ9UL68 1186 aa13.02□□□□□ -0.33
CBX3-206ENST00000481057 DCAF1Q9Y4B6 1507 aa13.02□□□□□ -0.33
CBX3-206ENST00000481057 NECTIN2Q92692 538 aa13.01□□□□□ -0.33
CBX3-206ENST00000481057 HPS5Q9UPZ3 1129 aa13.01□□□□□ -0.33
CBX3-206ENST00000481057 DISP3Q9P2K9 1392 aa13.01□□□□□ -0.33
CBX3-206ENST00000481057 TMEM132AQ24JP5 1023 aa13□□□□□ -0.33
CBX3-206ENST00000481057 SPNS2Q8IVW8 549 aa13□□□□□ -0.33
CBX3-206ENST00000481057 TSR3Q9UJK0 312 aaKnown RBP13□□□□□ -0.33
CBX3-206ENST00000481057 CFHP08603 1231 aa12.99□□□□□ -0.33
CBX3-206ENST00000481057 GCGRP47871 477 aa12.99□□□□□ -0.33
CBX3-206ENST00000481057 RSF1Q96T23 1441 aaPredicted RBP12.98□□□□□ -0.33
CBX3-206ENST00000481057 PPP4CP60510 307 aa12.97□□□□□ -0.33
CBX3-206ENST00000481057 HECW2Q9P2P5 1572 aa12.96□□□□□ -0.33
CBX3-206ENST00000481057 SPIRE2Q8WWL2 714 aa12.95□□□□□ -0.34
CBX3-206ENST00000481057 KDM4AO75164 1064 aa12.94□□□□□ -0.34
CBX3-206ENST00000481057 KMT5BQ4FZB7 885 aa12.94□□□□□ -0.34
CBX3-206ENST00000481057 NUTM1Q86Y26 1132 aa12.94□□□□□ -0.34
CBX3-206ENST00000481057 TBC1D2Q9BYX2 928 aa12.94□□□□□ -0.34
CBX3-206ENST00000481057 WBP1LQ9NX94 342 aa12.94□□□□□ -0.34
CBX3-206ENST00000481057 DIXDC1Q155Q3 683 aa12.93□□□□□ -0.34
CBX3-206ENST00000481057 SH3D19Q5HYK7 790 aa12.92□□□□□ -0.34
CBX3-206ENST00000481057 RNF166Q96A37 237 aaPredicted RBP12.92□□□□□ -0.34
CBX3-206ENST00000481057 RSPH6AQ9H0K4 717 aa12.92□□□□□ -0.34
CBX3-206ENST00000481057 APLP1P51693 650 aa12.91□□□□□ -0.34
CBX3-206ENST00000481057 USP46P62068 366 aa12.91□□□□□ -0.34
CBX3-206ENST00000481057 MYSM1Q5VVJ2 828 aa12.91□□□□□ -0.34
CBX3-206ENST00000481057 PRR14Q9BWN1 585 aa12.91□□□□□ -0.34
CBX3-206ENST00000481057 ACTN4O43707 911 aaKnown RBP12.9□□□□□ -0.34
CBX3-206ENST00000481057 FUT2Q10981 343 aa12.9□□□□□ -0.34
CBX3-206ENST00000481057 GOPCQ9HD26 462 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms