RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	LAMC1	P11047	1609 aa		7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	ANKRD30B	Q9BXX2	1392 aa		7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	MYOM2	P54296	1465 aa		7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	NWD1	Q149M9	1564 aa		7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	CLSPN	Q9HAW4	1339 aa		7.53	□□□□□ -1.2
HDAC6-223	ENST00000480525	CPS1	P31327	1500 aa		7.53	□□□□□ -1.2
HDAC6-223	ENST00000480525	ANKLE2	Q86XL3	938 aa		7.53	□□□□□ -1.2
HDAC6-223	ENST00000480525	PLEKHG1	Q9ULL1	1385 aa		7.53	□□□□□ -1.2
HDAC6-223	ENST00000480525	NPHP4	O75161	1426 aa	Predicted RBP	7.52	□□□□□ -1.2
HDAC6-223	ENST00000480525	NRXN1	Q9ULB1	1477 aa		7.52	□□□□□ -1.21
HDAC6-223	ENST00000480525	CHD2	O14647	1828 aa	Known RBP	7.52	□□□□□ -1.21
HDAC6-223	ENST00000480525	SETD1A	O15047	1707 aa	Known RBP	7.52	□□□□□ -1.21
HDAC6-223	ENST00000480525	KIAA1210	Q9ULL0	1709 aa		7.52	□□□□□ -1.21
HDAC6-223	ENST00000480525	NKTR	P30414	1462 aa	Known RBP	7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	TRIM52	Q96A61	297 aa		7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	EID1	Q9Y6B2	187 aa		7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	LTBP4	Q8N2S1	1624 aa		7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	NRXN3	Q9Y4C0	1643 aa		7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	RIMS2	Q9UQ26	1411 aa		7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	NCOA3	Q9Y6Q9	1424 aa		7.51	□□□□□ -1.21
HDAC6-223	ENST00000480525	KNDC1	Q76NI1	1749 aa		7.49	□□□□□ -1.21
HDAC6-223	ENST00000480525	XRN1	Q8IZH2	1706 aa	Known RBP	7.49	□□□□□ -1.21
HDAC6-223	ENST00000480525	VGF	O15240	615 aa	Predicted RBP	7.48	□□□□□ -1.21
HDAC6-223	ENST00000480525	ADAMTS13	Q76LX8	1427 aa		7.48	□□□□□ -1.21
HDAC6-223	ENST00000480525	TBX22	Q9Y458	520 aa		7.48	□□□□□ -1.21
HDAC6-223	ENST00000480525	DHX57	Q6P158	1386 aa	Known RBP	7.47	□□□□□ -1.21
HDAC6-223	ENST00000480525	TECPR2	O15040	1411 aa		7.47	□□□□□ -1.21
HDAC6-223	ENST00000480525	PIK3C2G	O75747	1445 aa		7.47	□□□□□ -1.21
HDAC6-223	ENST00000480525	HSPA2	P54652	639 aa		7.47	□□□□□ -1.21
HDAC6-223	ENST00000480525	STAG3	Q9UJ98	1225 aa		7.47	□□□□□ -1.21
HDAC6-223	ENST00000480525	LTK	P29376	864 aa		7.46	□□□□□ -1.22
HDAC6-223	ENST00000480525	TXNDC2	Q86VQ3	553 aa		7.46	□□□□□ -1.22
HDAC6-223	ENST00000480525	TIMELESS	Q9UNS1	1208 aa		7.46	□□□□□ -1.22
HDAC6-223	ENST00000480525	STRCP1	A6NGW2	1772 aa		7.46	□□□□□ -1.22
HDAC6-223	ENST00000480525	PTCH1	Q13635	1447 aa		7.45	□□□□□ -1.22
HDAC6-223	ENST00000480525	XIRP1	Q702N8	1843 aa	Known RBP	7.45	□□□□□ -1.22
HDAC6-223	ENST00000480525	ALK	Q9UM73	1620 aa		7.45	□□□□□ -1.22
HDAC6-223	ENST00000480525	DCC	P43146	1447 aa		7.44	□□□□□ -1.22
HDAC6-223	ENST00000480525	DLC1	Q96QB1	1528 aa		7.44	□□□□□ -1.22
HDAC6-223	ENST00000480525	KCNA6	P17658	529 aa		7.43	□□□□□ -1.22
HDAC6-223	ENST00000480525	SIRT1	Q96EB6	747 aa		7.43	□□□□□ -1.22
HDAC6-223	ENST00000480525	NCKAP5L	Q9HCH0	1330 aa		7.43	□□□□□ -1.22
HDAC6-223	ENST00000480525	LRRC7	Q96NW7	1537 aa		7.42	□□□□□ -1.22
HDAC6-223	ENST00000480525	ADGRB1	O14514	1584 aa		7.42	□□□□□ -1.22
HDAC6-223	ENST00000480525	FAM135B	Q49AJ0	1406 aa		7.42	□□□□□ -1.22
HDAC6-223	ENST00000480525	PPP1R15A	O75807	674 aa	Predicted RBP	7.41	□□□□□ -1.22
HDAC6-223	ENST00000480525	PLPPR3	Q6T4P5	718 aa		7.41	□□□□□ -1.22
HDAC6-223	ENST00000480525	ABCC11	Q96J66	1382 aa		7.41	□□□□□ -1.22
HDAC6-223	ENST00000480525	C14orf93	Q9H972	538 aa	Known RBP	7.4	□□□□□ -1.22
HDAC6-223	ENST00000480525	ASXL1	Q8IXJ9	1541 aa		7.4	□□□□□ -1.22
HDAC6-223	ENST00000480525	ADGRB2	O60241	1585 aa		7.4	□□□□□ -1.22
HDAC6-223	ENST00000480525	TRPM1	Q7Z4N2	1603 aa		7.39	□□□□□ -1.23
HDAC6-223	ENST00000480525	CDC42BPG	Q6DT37	1551 aa		7.39	□□□□□ -1.23
HDAC6-223	ENST00000480525	LRPPRC	P42704	1394 aa	Known RBP	7.39	□□□□□ -1.23
HDAC6-223	ENST00000480525	GPRASP1	Q5JY77	1395 aa		7.39	□□□□□ -1.23
HDAC6-223	ENST00000480525	FOXD1	Q16676	465 aa		7.39	□□□□□ -1.23
HDAC6-223	ENST00000480525	ZNF326	Q5BKZ1	582 aa	Known RBP	7.39	□□□□□ -1.23
HDAC6-223	ENST00000480525	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	7.38	□□□□□ -1.23
HDAC6-223	ENST00000480525	CERK	Q8TCT0	537 aa		7.38	□□□□□ -1.23
HDAC6-223	ENST00000480525	ARHGEF28	Q8N1W1	1705 aa	Known RBP	7.38	□□□□□ -1.23
HDAC6-223	ENST00000480525	PTPRU	Q92729	1446 aa		7.37	□□□□□ -1.23
HDAC6-223	ENST00000480525	ADGRL3	Q9HAR2	1447 aa		7.37	□□□□□ -1.23
HDAC6-223	ENST00000480525	MET	P08581	1390 aa		7.37	□□□□□ -1.23
HDAC6-223	ENST00000480525	CHGA	P10645	457 aa	Known RBP	7.37	□□□□□ -1.23
HDAC6-223	ENST00000480525	NALCN	Q8IZF0	1738 aa		7.37	□□□□□ -1.23
HDAC6-223	ENST00000480525	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	7.37	□□□□□ -1.23
HDAC6-223	ENST00000480525	RALGAPB	Q86X10	1494 aa		7.36	□□□□□ -1.23
HDAC6-223	ENST00000480525	YTHDC2	Q9H6S0	1430 aa	Known RBP	7.36	□□□□□ -1.23
HDAC6-223	ENST00000480525	SBNO2	Q9Y2G9	1366 aa		7.36	□□□□□ -1.23
HDAC6-223	ENST00000480525	ADGRF5	Q8IZF2	1346 aa		7.36	□□□□□ -1.23
HDAC6-223	ENST00000480525	SLC24A1	O60721	1099 aa		7.35	□□□□□ -1.23
HDAC6-223	ENST00000480525	FBXO41	Q8TF61	875 aa		7.35	□□□□□ -1.23
HDAC6-223	ENST00000480525	SLC26A8	Q96RN1	970 aa		7.35	□□□□□ -1.23
HDAC6-223	ENST00000480525	MSH6	P52701	1360 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	TMEM94	Q12767	1356 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	TONSL	Q96HA7	1378 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	DCAF11	Q8TEB1	546 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	PCGF6	Q9BYE7	350 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	C19orf44	Q9H6X5	657 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	AMOTL2	Q9Y2J4	779 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	FMN2	Q9NZ56	1722 aa		7.34	□□□□□ -1.23
HDAC6-223	ENST00000480525	EIF3A	Q14152	1382 aa	Known RBP	7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	ITSN1	Q15811	1721 aa		7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	KIF1A	Q12756	1690 aa		7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	TOM1	O60784	492 aa		7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	RGL3	Q3MIN7	710 aa		7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	CADPS2	Q86UW7	1296 aa		7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	L3MBTL2	Q969R5	705 aa		7.33	□□□□□ -1.24
HDAC6-223	ENST00000480525	NHSL1	Q5SYE7	1610 aa		7.32	□□□□□ -1.24
HDAC6-223	ENST00000480525	AHDC1	Q5TGY3	1603 aa	Predicted RBP	7.32	□□□□□ -1.24
HDAC6-223	ENST00000480525	ANKAR	Q7Z5J8	1434 aa		7.32	□□□□□ -1.24
HDAC6-223	ENST00000480525	ROBO2	Q9HCK4	1378 aa		7.32	□□□□□ -1.24
HDAC6-223	ENST00000480525	MST1R	Q04912	1400 aa		7.3	□□□□□ -1.24
HDAC6-223	ENST00000480525	PROSER2	Q86WR7	435 aa	Predicted RBP	7.3	□□□□□ -1.24
HDAC6-223	ENST00000480525	BCAN	Q96GW7	911 aa		7.3	□□□□□ -1.24
HDAC6-223	ENST00000480525	PUS7	Q96PZ0	661 aa	Known RBP	7.3	□□□□□ -1.24
HDAC6-223	ENST00000480525	TOPAZ1	Q8N9V7	1692 aa		7.3	□□□□□ -1.24
HDAC6-223	ENST00000480525	QRICH2	Q9H0J4	1663 aa		7.3	□□□□□ -1.24
HDAC6-223	ENST00000480525	ROBO1	Q9Y6N7	1651 aa		7.3	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms