RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 VGFO15240 615 aaPredicted RBP11.98□□□□□ -0.49
USP54-212ENST00000480210 ZNF326Q5BKZ1 582 aaKnown RBP11.98□□□□□ -0.49
USP54-212ENST00000480210 TXNDC2Q86VQ3 553 aa11.98□□□□□ -0.49
USP54-212ENST00000480210 STRCQ7RTU9 1775 aa11.97□□□□□ -0.49
USP54-212ENST00000480210 HSPA2P54652 639 aa11.97□□□□□ -0.49
USP54-212ENST00000480210 MED14O60244 1454 aa11.96□□□□□ -0.49
USP54-212ENST00000480210 SPATA31E1Q6ZUB1 1445 aa11.96□□□□□ -0.49
USP54-212ENST00000480210 RIMS2Q9UQ26 1411 aa11.96□□□□□ -0.49
USP54-212ENST00000480210 PPLO60437 1756 aa11.96□□□□□ -0.49
USP54-212ENST00000480210 SCAF11Q99590 1463 aaKnown RBP11.95□□□□□ -0.5
USP54-212ENST00000480210 ZFYVE9O95405 1425 aa11.95□□□□□ -0.5
USP54-212ENST00000480210 TIMELESSQ9UNS1 1208 aa11.95□□□□□ -0.5
USP54-212ENST00000480210 PPP1R15AO75807 674 aaPredicted RBP11.94□□□□□ -0.5
USP54-212ENST00000480210 IFT172Q9UG01 1749 aa11.94□□□□□ -0.5
USP54-212ENST00000480210 NEXMIFQ5QGS0 1516 aa11.93□□□□□ -0.5
USP54-212ENST00000480210 LTKP29376 864 aa11.93□□□□□ -0.5
USP54-212ENST00000480210 RGL3Q3MIN7 710 aa11.93□□□□□ -0.5
USP54-212ENST00000480210 CCER1Q8TC90 406 aaPredicted RBP11.93□□□□□ -0.5
USP54-212ENST00000480210 NPHP4O75161 1426 aaPredicted RBP11.93□□□□□ -0.5
USP54-212ENST00000480210 PLEKHG1Q9ULL1 1385 aa11.92□□□□□ -0.5
USP54-212ENST00000480210 NCKAP5LQ9HCH0 1330 aa11.92□□□□□ -0.5
USP54-212ENST00000480210 IQGAP1P46940 1657 aa11.92□□□□□ -0.5
USP54-212ENST00000480210 SIN3AQ96ST3 1273 aa11.9□□□□□ -0.5
USP54-212ENST00000480210 TBX22Q9Y458 520 aa11.9□□□□□ -0.5
USP54-212ENST00000480210 MYOM2P54296 1465 aa11.89□□□□□ -0.51
USP54-212ENST00000480210 DIP2AQ14689 1571 aa11.89□□□□□ -0.51
USP54-212ENST00000480210 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
USP54-212ENST00000480210 BCANQ96GW7 911 aa11.89□□□□□ -0.51
USP54-212ENST00000480210 PIK3R4Q99570 1358 aa11.89□□□□□ -0.51
USP54-212ENST00000480210 DCAF11Q8TEB1 546 aa11.88□□□□□ -0.51
USP54-212ENST00000480210 TONSLQ96HA7 1378 aa11.88□□□□□ -0.51
USP54-212ENST00000480210 SETBP1Q9Y6X0 1596 aa11.88□□□□□ -0.51
USP54-212ENST00000480210 NRXN1Q9ULB1 1477 aa11.86□□□□□ -0.51
USP54-212ENST00000480210 CHD2O14647 1828 aaKnown RBP11.86□□□□□ -0.51
USP54-212ENST00000480210 LAMC1P11047 1609 aa11.86□□□□□ -0.51
USP54-212ENST00000480210 NUTM2DQ5VT03 806 aaPredicted RBP11.85□□□□□ -0.51
USP54-212ENST00000480210 L3MBTL2Q969R5 705 aa11.85□□□□□ -0.51
USP54-212ENST00000480210 KIAA1210Q9ULL0 1709 aa11.85□□□□□ -0.51
USP54-212ENST00000480210 ADGRF5Q8IZF2 1346 aa11.85□□□□□ -0.51
USP54-212ENST00000480210 C14orf93Q9H972 538 aaKnown RBP11.84□□□□□ -0.51
USP54-212ENST00000480210 KDM2AQ9Y2K7 1162 aa11.84□□□□□ -0.51
USP54-212ENST00000480210 PIK3C2GO75747 1445 aa11.84□□□□□ -0.51
USP54-212ENST00000480210 ADAMTS13Q76LX8 1427 aa11.84□□□□□ -0.51
USP54-212ENST00000480210 ALKQ9UM73 1620 aa11.83□□□□□ -0.52
USP54-212ENST00000480210 KCNA6P17658 529 aa11.83□□□□□ -0.52
USP54-212ENST00000480210 NRXN3Q9Y4C0 1643 aa11.82□□□□□ -0.52
USP54-212ENST00000480210 SLC26A8Q96RN1 970 aa11.82□□□□□ -0.52
USP54-212ENST00000480210 SETD1AO15047 1707 aaKnown RBP11.81□□□□□ -0.52
USP54-212ENST00000480210 CPS1P31327 1500 aa11.81□□□□□ -0.52
USP54-212ENST00000480210 SIRT1Q96EB6 747 aa11.8□□□□□ -0.52
USP54-212ENST00000480210 PRAG1Q86YV5 1406 aa11.79□□□□□ -0.52
USP54-212ENST00000480210 NCOA3Q9Y6Q9 1424 aa11.78□□□□□ -0.52
USP54-212ENST00000480210 CFAP70Q5T0N1 1121 aa11.78□□□□□ -0.52
USP54-212ENST00000480210 AMOTL2Q9Y2J4 779 aa11.78□□□□□ -0.52
USP54-212ENST00000480210 NWD1Q149M9 1564 aa11.78□□□□□ -0.52
USP54-212ENST00000480210 NKTRP30414 1462 aaKnown RBP11.77□□□□□ -0.52
USP54-212ENST00000480210 ABCC11Q96J66 1382 aa11.77□□□□□ -0.53
USP54-212ENST00000480210 KNDC1Q76NI1 1749 aa11.77□□□□□ -0.53
USP54-212ENST00000480210 IQSEC2Q5JU85 1478 aa11.76□□□□□ -0.53
USP54-212ENST00000480210 ZNF335Q9H4Z2 1342 aaPredicted RBP11.76□□□□□ -0.53
USP54-212ENST00000480210 METP08581 1390 aa11.76□□□□□ -0.53
USP54-212ENST00000480210 LRPPRCP42704 1394 aaKnown RBP11.76□□□□□ -0.53
USP54-212ENST00000480210 TRPM1Q7Z4N2 1603 aa11.75□□□□□ -0.53
USP54-212ENST00000480210 LTBP4Q8N2S1 1624 aa11.75□□□□□ -0.53
USP54-212ENST00000480210 STRCP1A6NGW2 1772 aa11.75□□□□□ -0.53
USP54-212ENST00000480210 XRN1Q8IZH2 1706 aaKnown RBP11.74□□□□□ -0.53
USP54-212ENST00000480210 PROSER2Q86WR7 435 aaPredicted RBP11.74□□□□□ -0.53
USP54-212ENST00000480210 TECPR2O15040 1411 aa11.74□□□□□ -0.53
USP54-212ENST00000480210 PTCH1Q13635 1447 aa11.74□□□□□ -0.53
USP54-212ENST00000480210 YTHDC2Q9H6S0 1430 aaKnown RBP11.74□□□□□ -0.53
USP54-212ENST00000480210 ADGRB1O14514 1584 aa11.73□□□□□ -0.53
USP54-212ENST00000480210 SLC24A1O60721 1099 aa11.73□□□□□ -0.53
USP54-212ENST00000480210 ZEB1P37275 1124 aaPredicted RBP11.73□□□□□ -0.53
USP54-212ENST00000480210 PTPRUQ92729 1446 aa11.73□□□□□ -0.53
USP54-212ENST00000480210 DLC1Q96QB1 1528 aa11.73□□□□□ -0.53
USP54-212ENST00000480210 FAM135BQ49AJ0 1406 aa11.72□□□□□ -0.53
USP54-212ENST00000480210 ROCK2O75116 1388 aaKnown RBP11.72□□□□□ -0.53
USP54-212ENST00000480210 GPRASP1Q5JY77 1395 aa11.72□□□□□ -0.53
USP54-212ENST00000480210 NBPF8Q3BBV2 869 aa11.72□□□□□ -0.53
USP54-212ENST00000480210 TMEM132EQ6IEE7 984 aa11.72□□□□□ -0.53
USP54-212ENST00000480210 SENP3Q9H4L4 574 aaPredicted RBP11.72□□□□□ -0.53
USP54-212ENST00000480210 RALGAPBQ86X10 1494 aa11.71□□□□□ -0.53
USP54-212ENST00000480210 CERKQ8TCT0 537 aa11.71□□□□□ -0.53
USP54-212ENST00000480210 LRRC7Q96NW7 1537 aa11.7□□□□□ -0.54
USP54-212ENST00000480210 NBPF1Q3BBV0 1214 aa11.7□□□□□ -0.54
USP54-212ENST00000480210 ASXL1Q8IXJ9 1541 aa11.7□□□□□ -0.54
USP54-212ENST00000480210 XIRP1Q702N8 1843 aaKnown RBP11.7□□□□□ -0.54
USP54-212ENST00000480210 EIF3AQ14152 1382 aaKnown RBP11.69□□□□□ -0.54
USP54-212ENST00000480210 CARD11Q9BXL7 1154 aa11.69□□□□□ -0.54
USP54-212ENST00000480210 C19orf44Q9H6X5 657 aa11.69□□□□□ -0.54
USP54-212ENST00000480210 STK26Q9P289 416 aa11.69□□□□□ -0.54
USP54-212ENST00000480210 POGKQ9P215 609 aa11.68□□□□□ -0.54
USP54-212ENST00000480210 TRAK1Q9UPV9 953 aa11.68□□□□□ -0.54
USP54-212ENST00000480210 ARHGEF28Q8N1W1 1705 aaKnown RBP11.68□□□□□ -0.54
USP54-212ENST00000480210 MSH6P52701 1360 aa11.67□□□□□ -0.54
USP54-212ENST00000480210 TMEM94Q12767 1356 aa11.67□□□□□ -0.54
USP54-212ENST00000480210 DCCP43146 1447 aa11.67□□□□□ -0.54
USP54-212ENST00000480210 ROBO2Q9HCK4 1378 aa11.67□□□□□ -0.54
USP54-212ENST00000480210 TOM1O60784 492 aa11.66□□□□□ -0.54
USP54-212ENST00000480210 C14orf37Q86TY3 774 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms