RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 E9PSI1 815 aa16.96■□□□□ 0.3
USP42-206ENST00000479544 SOX12O15370 315 aa16.96■□□□□ 0.3
USP42-206ENST00000479544 CASC1Q6TDU7 716 aa16.95■□□□□ 0.3
USP42-206ENST00000479544 RBM10P98175 930 aaKnown RBP16.95■□□□□ 0.3
USP42-206ENST00000479544 LNPKQ9C0E8 428 aa16.94■□□□□ 0.3
USP42-206ENST00000479544 C22orf23Q9BZE7 217 aa16.94■□□□□ 0.3
USP42-206ENST00000479544 SHROOM2Q13796 1616 aa16.94■□□□□ 0.3
USP42-206ENST00000479544 ANKRD45Q5TZF3 282 aa16.93■□□□□ 0.3
USP42-206ENST00000479544 DDX11L8A8MPP1 907 aa16.93■□□□□ 0.3
USP42-206ENST00000479544 SRPK2P78362 688 aaKnown RBP16.93■□□□□ 0.3
USP42-206ENST00000479544 CD109Q6YHK3 1445 aa16.93■□□□□ 0.3
USP42-206ENST00000479544 TRAK1Q9UPV9 953 aa16.91■□□□□ 0.3
USP42-206ENST00000479544 MPNDQ8N594 471 aa16.9■□□□□ 0.3
USP42-206ENST00000479544 PDZRN3Q9UPQ7 1066 aa16.9■□□□□ 0.3
USP42-206ENST00000479544 CCDC144AA2RUR9 1427 aa16.89■□□□□ 0.29
USP42-206ENST00000479544 R3HCC1Q9Y3T6 440 aaKnown RBP16.88■□□□□ 0.29
USP42-206ENST00000479544 IPO8O15397 1037 aaKnown RBP16.88■□□□□ 0.29
USP42-206ENST00000479544 EFCAB2Q5VUJ9 269 aa16.88■□□□□ 0.29
USP42-206ENST00000479544 GGT6Q6P531 493 aa16.88■□□□□ 0.29
USP42-206ENST00000479544 PCF11O94913 1555 aaKnown RBP16.87■□□□□ 0.29
USP42-206ENST00000479544 MRE11P49959 708 aa16.87■□□□□ 0.29
USP42-206ENST00000479544 ZKSCAN2Q63HK3 967 aa16.87■□□□□ 0.29
USP42-206ENST00000479544 PPP2R1AP30153 589 aa16.87■□□□□ 0.29
USP42-206ENST00000479544 A0A0U1RQG5 324 aaPredicted RBP16.86■□□□□ 0.29
USP42-206ENST00000479544 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.86■□□□□ 0.29
USP42-206ENST00000479544 KIF3BO15066 747 aa16.86■□□□□ 0.29
USP42-206ENST00000479544 RNF214Q8ND24 703 aa16.86■□□□□ 0.29
USP42-206ENST00000479544 BCL11BQ9C0K0 894 aaPredicted RBP16.86■□□□□ 0.29
USP42-206ENST00000479544 KIAA2012Q0VF49 1180 aa16.85■□□□□ 0.29
USP42-206ENST00000479544 TSPOAP1O95153 1857 aa16.85■□□□□ 0.29
USP42-206ENST00000479544 ANKRD50Q9ULJ7 1429 aa16.85■□□□□ 0.29
USP42-206ENST00000479544 UBE2Q2Q8WVN8 375 aa16.84■□□□□ 0.29
USP42-206ENST00000479544 UHRF1BP1LA0JNW5 1464 aa16.84■□□□□ 0.29
USP42-206ENST00000479544 MCM4P33991 863 aa16.84■□□□□ 0.29
USP42-206ENST00000479544 DZIP1LQ8IYY4 767 aaKnown RBP16.84■□□□□ 0.29
USP42-206ENST00000479544 PANK2Q9BZ23 570 aa16.84■□□□□ 0.29
USP42-206ENST00000479544 RSPH4AQ5TD94 716 aa16.83■□□□□ 0.29
USP42-206ENST00000479544 DRC7Q8IY82 874 aa16.83■□□□□ 0.29
USP42-206ENST00000479544 EFCAB5A4FU69 1503 aa16.83■□□□□ 0.28
USP42-206ENST00000479544 WDR7Q9Y4E6 1490 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 MCTP1Q6DN14 999 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 NCOA1Q15788 1441 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 ESPNB1AK53 854 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 DIP2BQ9P265 1576 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 KDM4FA0A1W2PPD8 638 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 CDK11BP21127 795 aaKnown RBP16.82■□□□□ 0.28
USP42-206ENST00000479544 MLECQ14165 292 aa16.82■□□□□ 0.28
USP42-206ENST00000479544 NASPP49321 788 aaPredicted RBP16.81■□□□□ 0.28
USP42-206ENST00000479544 CHAF1AQ13111 956 aaPredicted RBP16.81■□□□□ 0.28
USP42-206ENST00000479544 PTPRKQ15262 1439 aa16.81■□□□□ 0.28
USP42-206ENST00000479544 KANK1Q14678 1352 aa16.81■□□□□ 0.28
USP42-206ENST00000479544 TCP11L2Q8N4U5 519 aa16.8■□□□□ 0.28
USP42-206ENST00000479544 GRPEL1Q9HAV7 217 aa16.8■□□□□ 0.28
USP42-206ENST00000479544 ADCY10Q96PN6 1610 aa16.79■□□□□ 0.28
USP42-206ENST00000479544 KCNJ4P48050 445 aa16.79■□□□□ 0.28
USP42-206ENST00000479544 POGZQ7Z3K3 1410 aa16.79■□□□□ 0.28
USP42-206ENST00000479544 CAVIN1Q6NZI2 390 aaKnown RBP16.79■□□□□ 0.28
USP42-206ENST00000479544 SLC4A10Q6U841 1118 aa16.79■□□□□ 0.28
USP42-206ENST00000479544 SPAG9O60271 1321 aaKnown RBP16.78■□□□□ 0.28
USP42-206ENST00000479544 TSR2Q969E8 191 aaKnown RBP16.78■□□□□ 0.28
USP42-206ENST00000479544 MAP3K1Q13233 1512 aa16.78■□□□□ 0.28
USP42-206ENST00000479544 ZMYND15Q9H091 742 aa16.78■□□□□ 0.28
USP42-206ENST00000479544 GOLGA6L4A6NEF3 574 aa16.77■□□□□ 0.28
USP42-206ENST00000479544 IGHDP01880 384 aa16.77■□□□□ 0.28
USP42-206ENST00000479544 C14orf37Q86TY3 774 aa16.77■□□□□ 0.28
USP42-206ENST00000479544 EPRSP07814 1512 aaKnown RBP16.77■□□□□ 0.27
USP42-206ENST00000479544 TBC1D2Q9BYX2 928 aa16.77■□□□□ 0.27
USP42-206ENST00000479544 TRIM6-TRIM34B2RNG4 842 aa16.76■□□□□ 0.27
USP42-206ENST00000479544 KIAA1211Q6ZU35 1233 aa16.76■□□□□ 0.27
USP42-206ENST00000479544 CHMP4BQ9H444 224 aaKnown RBP16.76■□□□□ 0.27
USP42-206ENST00000479544 C1orf115Q9H7X2 142 aa16.76■□□□□ 0.27
USP42-206ENST00000479544 UGGT2Q9NYU1 1516 aa16.76■□□□□ 0.27
USP42-206ENST00000479544 SKOR2Q2VWA4 1001 aaPredicted RBP16.76■□□□□ 0.27
USP42-206ENST00000479544 CDK13Q14004 1512 aaKnown RBP16.76■□□□□ 0.27
USP42-206ENST00000479544 ANKRD30BQ9BXX2 1392 aa16.75■□□□□ 0.27
USP42-206ENST00000479544 MIA2Q96PC5 1412 aa16.75■□□□□ 0.27
USP42-206ENST00000479544 EHBP1L1Q8N3D4 1523 aa16.75■□□□□ 0.27
USP42-206ENST00000479544 NAP1L2Q9ULW6 460 aaPredicted RBP16.75■□□□□ 0.27
USP42-206ENST00000479544 OS9Q13438 667 aaPredicted RBP16.74■□□□□ 0.27
USP42-206ENST00000479544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.74■□□□□ 0.27
USP42-206ENST00000479544 SEC24BO95487 1268 aa16.74■□□□□ 0.27
USP42-206ENST00000479544 CHMP3Q9Y3E7 222 aa16.74■□□□□ 0.27
USP42-206ENST00000479544 PTMSP20962 102 aa16.73■□□□□ 0.27
USP42-206ENST00000479544 KDM5BQ9UGL1 1544 aa16.73■□□□□ 0.27
USP42-206ENST00000479544 ADGRL1O94910 1474 aa16.73■□□□□ 0.27
USP42-206ENST00000479544 XRCC6P12956 609 aaKnown RBP eCLIP16.73■□□□□ 0.27
USP42-206ENST00000479544 MTHFSP49914 203 aa16.73■□□□□ 0.27
USP42-206ENST00000479544 C8orf34Q49A92 452 aa16.73■□□□□ 0.27
USP42-206ENST00000479544 DUSP27Q5VZP5 1158 aa16.72■□□□□ 0.27
USP42-206ENST00000479544 DDX19BQ9UMR2 479 aa16.72■□□□□ 0.27
USP42-206ENST00000479544 SLFN5Q08AF3 891 aa16.72■□□□□ 0.27
USP42-206ENST00000479544 DAPK1P53355 1430 aa16.72■□□□□ 0.27
USP42-206ENST00000479544 KIAA1107Q9UPP5 1409 aa16.72■□□□□ 0.27
USP42-206ENST00000479544 ST18O60284 1047 aa16.72■□□□□ 0.27
USP42-206ENST00000479544 RAPGEF3O95398 923 aa16.71■□□□□ 0.27
USP42-206ENST00000479544 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.71■□□□□ 0.27
USP42-206ENST00000479544 MCCP23508 829 aa16.71■□□□□ 0.27
USP42-206ENST00000479544 PDE3AQ14432 1141 aa16.71■□□□□ 0.27
USP42-206ENST00000479544 RRAGDQ9NQL2 400 aaPredicted RBP16.71■□□□□ 0.27
USP42-206ENST00000479544 ZRSR1Q15695 479 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms