RNA–Protein interactions for RNA: ENST00000479099.2

RC3H1-204, Transcript of ring finger and CCCH-type domains 1, humanhuman

TSL 3

Gene RC3H1, Length 481 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1-204ENST00000479099 SHROOM4Q9ULL8 1493 aa9.52□□□□□ -0.89
RC3H1-204ENST00000479099 PDIA4P13667 645 aaKnown RBP9.51□□□□□ -0.89
RC3H1-204ENST00000479099 NUDT18Q6ZVK8 323 aa9.51□□□□□ -0.89
RC3H1-204ENST00000479099 SAMD7Q7Z3H4 446 aa9.51□□□□□ -0.89
RC3H1-204ENST00000479099 TTC13Q8NBP0 860 aa9.51□□□□□ -0.89
RC3H1-204ENST00000479099 PPP4CP60510 307 aa9.5□□□□□ -0.89
RC3H1-204ENST00000479099 PADI6Q6TGC4 694 aa9.5□□□□□ -0.89
RC3H1-204ENST00000479099 C1orf115Q9H7X2 142 aa9.49□□□□□ -0.89
RC3H1-204ENST00000479099 HDGFP51858 240 aaKnown RBP9.48□□□□□ -0.89
RC3H1-204ENST00000479099 KCNC4Q03721 635 aa9.48□□□□□ -0.89
RC3H1-204ENST00000479099 NECTIN2Q92692 538 aa9.46□□□□□ -0.9
RC3H1-204ENST00000479099 PTGDRQ13258 359 aa9.44□□□□□ -0.9
RC3H1-204ENST00000479099 RNF40O75150 1001 aa9.42□□□□□ -0.9
RC3H1-204ENST00000479099 ZC3H15Q8WU90 426 aaKnown RBP9.42□□□□□ -0.9
RC3H1-204ENST00000479099 EYA1Q99502 592 aa9.42□□□□□ -0.9
RC3H1-204ENST00000479099 SEMA3EO15041 775 aa9.41□□□□□ -0.9
RC3H1-204ENST00000479099 HMGB1P09429 215 aaKnown RBP9.41□□□□□ -0.9
RC3H1-204ENST00000479099 SWT1Q5T5J6 900 aaKnown RBP9.41□□□□□ -0.9
RC3H1-204ENST00000479099 SLF2Q8IX21 1173 aa9.41□□□□□ -0.9
RC3H1-204ENST00000479099 NUTM2FA1L443 756 aa9.4□□□□□ -0.9
RC3H1-204ENST00000479099 IGSF3O75054 1194 aa9.4□□□□□ -0.9
RC3H1-204ENST00000479099 TJAP1Q5JTD0 557 aa9.4□□□□□ -0.9
RC3H1-204ENST00000479099 SLC24A3Q9HC58 644 aa9.4□□□□□ -0.9
RC3H1-204ENST00000479099 SLC4A3P48751 1232 aa9.39□□□□□ -0.91
RC3H1-204ENST00000479099 MTRQ99707 1265 aa9.38□□□□□ -0.91
RC3H1-204ENST00000479099 IL21Q9HBE4 155 aa9.38□□□□□ -0.91
RC3H1-204ENST00000479099 APLP1P51693 650 aa9.37□□□□□ -0.91
RC3H1-204ENST00000479099 RBM46Q8TBY0 533 aaKnown RBP9.37□□□□□ -0.91
RC3H1-204ENST00000479099 FCHSD2O94868 740 aa9.36□□□□□ -0.91
RC3H1-204ENST00000479099 DNAJB2P25686 324 aa9.36□□□□□ -0.91
RC3H1-204ENST00000479099 ADGRG1Q9Y653 693 aa9.36□□□□□ -0.91
RC3H1-204ENST00000479099 TESPA1A2RU30 521 aaPredicted RBP9.35□□□□□ -0.91
RC3H1-204ENST00000479099 IRX2Q9BZI1 471 aaPredicted RBP9.35□□□□□ -0.91
RC3H1-204ENST00000479099 SMYD5Q6GMV2 418 aa9.34□□□□□ -0.91
RC3H1-204ENST00000479099 APBB1O00213 710 aa9.32□□□□□ -0.92
RC3H1-204ENST00000479099 CDK11BP21127 795 aaKnown RBP9.32□□□□□ -0.92
RC3H1-204ENST00000479099 KCTD17Q8N5Z5 321 aa9.32□□□□□ -0.92
RC3H1-204ENST00000479099 PRR14Q9BWN1 585 aa9.32□□□□□ -0.92
RC3H1-204ENST00000479099 TMEM134Q9H6X4 195 aa9.32□□□□□ -0.92
RC3H1-204ENST00000479099 CDK11AQ9UQ88 783 aaPredicted RBP9.32□□□□□ -0.92
RC3H1-204ENST00000479099 HSP90B1P14625 803 aaKnown RBP9.31□□□□□ -0.92
RC3H1-204ENST00000479099 HIC1Q14526 733 aa9.31□□□□□ -0.92
RC3H1-204ENST00000479099 RCCD1A6NED2 376 aa9.3□□□□□ -0.92
RC3H1-204ENST00000479099 ARID3CA6NKF2 412 aa9.3□□□□□ -0.92
RC3H1-204ENST00000479099 FAM161AQ3B820 660 aa9.3□□□□□ -0.92
RC3H1-204ENST00000479099 ZNF516Q92618 1163 aa9.3□□□□□ -0.92
RC3H1-204ENST00000479099 RBM26Q5T8P6 1007 aaKnown RBP9.29□□□□□ -0.92
RC3H1-204ENST00000479099 RGS22Q8NE09 1264 aa9.29□□□□□ -0.92
RC3H1-204ENST00000479099 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.28□□□□□ -0.92
RC3H1-204ENST00000479099 RAD21O60216 631 aa9.28□□□□□ -0.92
RC3H1-204ENST00000479099 OATP04181 439 aa9.28□□□□□ -0.92
RC3H1-204ENST00000479099 COPS2P61201 443 aa9.28□□□□□ -0.92
RC3H1-204ENST00000479099 PPP1R18Q6NYC8 613 aa9.27□□□□□ -0.93
RC3H1-204ENST00000479099 PXYLP1Q8TE99 480 aa9.27□□□□□ -0.93
RC3H1-204ENST00000479099 PCDHB3Q9Y5E6 796 aa9.27□□□□□ -0.93
RC3H1-204ENST00000479099 GNPATO15228 680 aa9.25□□□□□ -0.93
RC3H1-204ENST00000479099 ZPR1O75312 459 aa9.25□□□□□ -0.93
RC3H1-204ENST00000479099 KMT5BQ4FZB7 885 aa9.25□□□□□ -0.93
RC3H1-204ENST00000479099 TRAIPQ9BWF2 469 aa9.25□□□□□ -0.93
RC3H1-204ENST00000479099 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.25□□□□□ -0.93
RC3H1-204ENST00000479099 NKX2-3Q8TAU0 364 aa9.24□□□□□ -0.93
RC3H1-204ENST00000479099 PUS7Q96PZ0 661 aaKnown RBP9.24□□□□□ -0.93
RC3H1-204ENST00000479099 GPR37O15354 613 aa9.23□□□□□ -0.93
RC3H1-204ENST00000479099 ACTN4O43707 911 aaKnown RBP9.23□□□□□ -0.93
RC3H1-204ENST00000479099 ZMYND10O75800 440 aa9.23□□□□□ -0.93
RC3H1-204ENST00000479099 GGCXP38435 758 aa9.23□□□□□ -0.93
RC3H1-204ENST00000479099 METTL3Q86U44 580 aaKnown RBP9.23□□□□□ -0.93
RC3H1-204ENST00000479099 CFHP08603 1231 aa9.22□□□□□ -0.93
RC3H1-204ENST00000479099 BLOC1S3Q6QNY0 202 aa9.22□□□□□ -0.93
RC3H1-204ENST00000479099 PRKD2Q9BZL6 878 aa9.22□□□□□ -0.93
RC3H1-204ENST00000479099 SLC10A3P09131 477 aa9.21□□□□□ -0.94
RC3H1-204ENST00000479099 FECHP22830 423 aa9.21□□□□□ -0.94
RC3H1-204ENST00000479099 TMUB1Q9BVT8 246 aa9.21□□□□□ -0.94
RC3H1-204ENST00000479099 V9GY48 417 aaPredicted RBP9.21□□□□□ -0.94
RC3H1-204ENST00000479099 IL27Q8NEV9 243 aa9.2□□□□□ -0.94
RC3H1-204ENST00000479099 LAPTM4AQ15012 233 aa9.19□□□□□ -0.94
RC3H1-204ENST00000479099 RSPH4AQ5TD94 716 aa9.19□□□□□ -0.94
RC3H1-204ENST00000479099 GPIHBP1Q8IV16 184 aa9.19□□□□□ -0.94
RC3H1-204ENST00000479099 CCDC82Q8N4S0 544 aa9.18□□□□□ -0.94
RC3H1-204ENST00000479099 MTMR7Q9Y216 660 aa9.18□□□□□ -0.94
RC3H1-204ENST00000479099 Q6ZNB5 142 aa9.16□□□□□ -0.94
RC3H1-204ENST00000479099 GPBP1L1Q9HC44 474 aaPredicted RBP9.16□□□□□ -0.94
RC3H1-204ENST00000479099 TLL1O43897 1013 aa9.15□□□□□ -0.94
RC3H1-204ENST00000479099 NR1I2O75469 434 aa9.15□□□□□ -0.94
RC3H1-204ENST00000479099 TMCO4Q5TGY1 634 aa9.15□□□□□ -0.94
RC3H1-204ENST00000479099 GFRA3O60609 400 aa9.14□□□□□ -0.95
RC3H1-204ENST00000479099 BARGINQ6ZT62 677 aa9.14□□□□□ -0.95
RC3H1-204ENST00000479099 FLIIQ13045 1269 aa9.13□□□□□ -0.95
RC3H1-204ENST00000479099 RNF223E7ERA6 249 aa9.12□□□□□ -0.95
RC3H1-204ENST00000479099 ADH1BP00325 375 aa9.12□□□□□ -0.95
RC3H1-204ENST00000479099 RDH13Q8NBN7 331 aa9.12□□□□□ -0.95
RC3H1-204ENST00000479099 CHMP4AQ9BY43 222 aa9.12□□□□□ -0.95
RC3H1-204ENST00000479099 KDM4CQ9H3R0 1056 aa9.12□□□□□ -0.95
RC3H1-204ENST00000479099 RBM25P49756 843 aaKnown RBP9.11□□□□□ -0.95
RC3H1-204ENST00000479099 MFAP1P55081 439 aaKnown RBP9.11□□□□□ -0.95
RC3H1-204ENST00000479099 AK7Q96M32 723 aa9.11□□□□□ -0.95
RC3H1-204ENST00000479099 DDX11L8A8MPP1 907 aa9.1□□□□□ -0.95
RC3H1-204ENST00000479099 NRG2O14511 850 aaPredicted RBP9.1□□□□□ -0.95
RC3H1-204ENST00000479099 AEBP1Q8IUX7 1158 aa9.1□□□□□ -0.95
RC3H1-204ENST00000479099 SULF1Q8IWU6 871 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms