RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 CLGNO14967 610 aa6.53□□□□□ -1.36
USF3-202ENST00000478658 FRAT2O75474 233 aaPredicted RBP6.53□□□□□ -1.36
USF3-202ENST00000478658 EPB41L2O43491 1005 aaKnown RBP6.53□□□□□ -1.36
USF3-202ENST00000478658 RAB3IL1Q8TBN0 382 aa6.53□□□□□ -1.36
USF3-202ENST00000478658 CHMP7Q8WUX9 453 aaPredicted RBP6.53□□□□□ -1.36
USF3-202ENST00000478658 ERICH2A1L162 156 aa6.53□□□□□ -1.36
USF3-202ENST00000478658 OFD1O75665 1012 aa6.53□□□□□ -1.36
USF3-202ENST00000478658 RALBP1Q15311 655 aa6.52□□□□□ -1.36
USF3-202ENST00000478658 FAM114A1Q8IWE2 563 aa6.52□□□□□ -1.36
USF3-202ENST00000478658 RSPH6AQ9H0K4 717 aa6.52□□□□□ -1.36
USF3-202ENST00000478658 H3BQV1 296 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 U2SURPO15042 1029 aaKnown RBP6.52□□□□□ -1.37
USF3-202ENST00000478658 IFFO2Q5TF58 517 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 POGKQ9P215 609 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 FERP16591 822 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 BCL2L13Q9BXK5 485 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 PABPN1Q86U42 306 aaKnown RBP eCLIP6.52□□□□□ -1.37
USF3-202ENST00000478658 TAX1BP1Q86VP1 789 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 KAT6BQ8WYB5 2073 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 CEP135Q66GS9 1140 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 DNAAF4Q8WXU2 420 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 BECN2A8MW95 431 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 TMCO3Q6UWJ1 677 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 CCDC27Q2M243 656 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 SMC6Q96SB8 1091 aa6.52□□□□□ -1.37
USF3-202ENST00000478658 KIF4AO95239 1232 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 SAFBQ15424 915 aaKnown RBP eCLIP6.51□□□□□ -1.37
USF3-202ENST00000478658 TCHPQ9BT92 498 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 FAM107BQ9H098 131 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 TTC12Q9H892 705 aaPredicted RBP6.51□□□□□ -1.37
USF3-202ENST00000478658 SLC3A2P08195 630 aaKnown RBP6.51□□□□□ -1.37
USF3-202ENST00000478658 GTF2E1P29083 439 aaPredicted RBP6.51□□□□□ -1.37
USF3-202ENST00000478658 PPP1R9BQ96SB3 815 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 ROCK1Q13464 1354 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 PHLDB1Q86UU1 1377 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 KIF20AO95235 890 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 LEKR1Q6ZMV7 388 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 SMC1AQ14683 1233 aaKnown RBP6.51□□□□□ -1.37
USF3-202ENST00000478658 TMEM87AQ8NBN3 555 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 TRIM5Q9C035 493 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 TMF1P82094 1093 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 TMEM132AQ24JP5 1023 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 STK31Q9BXU1 1019 aa6.51□□□□□ -1.37
USF3-202ENST00000478658 PDE4CQ08493 712 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 ZFYVE27Q5T4F4 411 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 RUFY2Q8WXA3 655 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 PIBF1Q8WXW3 757 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 MCM3P25205 808 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 SEPT6Q14141 434 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 ENOX2Q16206 610 aaKnown RBP6.5□□□□□ -1.37
USF3-202ENST00000478658 CCDC14Q49A88 953 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 RNF20Q5VTR2 975 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 DZIP1Q86YF9 867 aaKnown RBP6.5□□□□□ -1.37
USF3-202ENST00000478658 PPFIBP2Q8ND30 876 aa6.5□□□□□ -1.37
USF3-202ENST00000478658 ZNF771Q7L3S4 317 aaPredicted RBP6.5□□□□□ -1.37
USF3-202ENST00000478658 FBXO3Q9UK99 471 aa6.49□□□□□ -1.37
USF3-202ENST00000478658 PPM1FP49593 454 aaPredicted RBP6.49□□□□□ -1.37
USF3-202ENST00000478658 DDX46Q7L014 1031 aaKnown RBP6.49□□□□□ -1.37
USF3-202ENST00000478658 FAM184AQ8NB25 1140 aa6.49□□□□□ -1.37
USF3-202ENST00000478658 PLPPR3Q6T4P5 718 aa6.49□□□□□ -1.37
USF3-202ENST00000478658 CCDC39Q9UFE4 941 aa6.49□□□□□ -1.37
USF3-202ENST00000478658 DHX16O60231 1041 aaKnown RBP6.49□□□□□ -1.37
USF3-202ENST00000478658 POLE3Q9NRF9 147 aa6.49□□□□□ -1.37
USF3-202ENST00000478658 TRDNQ13061 729 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 DAAM2Q86T65 1068 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 FAM9BQ8IZU0 186 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 TMCO5BA8MYB1 307 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 KIF5CO60282 957 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 HAUS2Q9NVX0 235 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 GIMAP7Q8NHV1 300 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 DDX11Q96FC9 970 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 VSIG10Q8N0Z9 540 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 CCDC82Q8N4S0 544 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 PDIA4P13667 645 aaKnown RBP6.48□□□□□ -1.37
USF3-202ENST00000478658 NAP1L1P55209 391 aaKnown RBP6.48□□□□□ -1.37
USF3-202ENST00000478658 BMS1Q14692 1282 aaKnown RBP6.48□□□□□ -1.37
USF3-202ENST00000478658 OLFM4Q6UX06 510 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 MKRN1Q9UHC7 482 aaKnown RBP6.48□□□□□ -1.37
USF3-202ENST00000478658 JAKMIP3Q5VZ66 844 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 CCDC150Q8NCX0 1101 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 DRC1Q96MC2 740 aa6.48□□□□□ -1.37
USF3-202ENST00000478658 ANAPC15P60006 121 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 STIM1Q13586 685 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 RBM19Q9Y4C8 960 aaKnown RBP6.47□□□□□ -1.37
USF3-202ENST00000478658 C6orf163Q5TEZ5 329 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 HDGFL2Q7Z4V5 671 aaPredicted RBP6.47□□□□□ -1.37
USF3-202ENST00000478658 FERMT2Q96AC1 680 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 LETM1O95202 739 aaPredicted RBP6.47□□□□□ -1.37
USF3-202ENST00000478658 MBD3O95983 291 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 MPHOSPH6Q99547 160 aaKnown RBP6.47□□□□□ -1.37
USF3-202ENST00000478658 TRIM35Q9UPQ4 493 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 TSNARE1Q96NA8 513 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 SPC25Q9HBM1 224 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 MAGEC2Q9UBF1 373 aaPredicted RBP6.47□□□□□ -1.37
USF3-202ENST00000478658 CLIP2Q9UDT6 1046 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 SOGA3Q5TF21 947 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 KIF5AQ12840 1032 aa6.47□□□□□ -1.37
USF3-202ENST00000478658 TAOK3Q9H2K8 898 aa6.46□□□□□ -1.37
USF3-202ENST00000478658 CACYBPQ9HB71 228 aaKnown RBP6.46□□□□□ -1.37
USF3-202ENST00000478658 SMC2O95347 1197 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms