RNA–Protein interactions for RNA: ENST00000477626.5

PRPF39-203, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,507 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-203ENST00000477626 STAC3Q96MF2 364 aa17.31■□□□□ 0.36
PRPF39-203ENST00000477626 QRICH2Q9H0J4 1663 aa17.31■□□□□ 0.36
PRPF39-203ENST00000477626 KNDC1Q76NI1 1749 aa17.31■□□□□ 0.36
PRPF39-203ENST00000477626 TESK2Q96S53 571 aa17.28■□□□□ 0.36
PRPF39-203ENST00000477626 ARID4BQ4LE39 1312 aaPredicted RBP17.28■□□□□ 0.36
PRPF39-203ENST00000477626 A2ML1A8K2U0 1454 aa17.28■□□□□ 0.36
PRPF39-203ENST00000477626 ZNF142P52746 1687 aaPredicted RBP17.28■□□□□ 0.36
PRPF39-203ENST00000477626 KIF7Q2M1P5 1343 aa17.28■□□□□ 0.36
PRPF39-203ENST00000477626 DCAF11Q8TEB1 546 aa17.27■□□□□ 0.36
PRPF39-203ENST00000477626 EIF4G2P78344 907 aaKnown RBP eCLIP17.27■□□□□ 0.36
PRPF39-203ENST00000477626 SCAF11Q99590 1463 aaKnown RBP17.27■□□□□ 0.35
PRPF39-203ENST00000477626 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
PRPF39-203ENST00000477626 PTPRMP28827 1452 aa17.26■□□□□ 0.35
PRPF39-203ENST00000477626 NBPF1Q3BBV0 1214 aa17.26■□□□□ 0.35
PRPF39-203ENST00000477626 ROCK2O75116 1388 aaKnown RBP17.23■□□□□ 0.35
PRPF39-203ENST00000477626 ADGRF5Q8IZF2 1346 aa17.22■□□□□ 0.35
PRPF39-203ENST00000477626 WASHC2CQ9Y4E1 1318 aa17.22■□□□□ 0.35
PRPF39-203ENST00000477626 ALKQ9UM73 1620 aa17.22■□□□□ 0.35
PRPF39-203ENST00000477626 RPGRIP1LQ68CZ1 1315 aa17.21■□□□□ 0.35
PRPF39-203ENST00000477626 SBNO2Q9Y2G9 1366 aa17.2■□□□□ 0.34
PRPF39-203ENST00000477626 DISP3Q9P2K9 1392 aa17.2■□□□□ 0.34
PRPF39-203ENST00000477626 USP32Q8NFA0 1604 aa17.19■□□□□ 0.34
PRPF39-203ENST00000477626 TRHP20396 242 aaPredicted RBP17.19■□□□□ 0.34
PRPF39-203ENST00000477626 GGT6Q6P531 493 aa17.19■□□□□ 0.34
PRPF39-203ENST00000477626 SLIT1O75093 1534 aa17.18■□□□□ 0.34
PRPF39-203ENST00000477626 ARHGAP23Q9P227 1491 aa17.17■□□□□ 0.34
PRPF39-203ENST00000477626 DLC1Q96QB1 1528 aa17.17■□□□□ 0.34
PRPF39-203ENST00000477626 ZMYM3Q14202 1370 aa17.16■□□□□ 0.34
PRPF39-203ENST00000477626 MED14O60244 1454 aa17.16■□□□□ 0.34
PRPF39-203ENST00000477626 IDI1Q13907 227 aa17.16■□□□□ 0.34
PRPF39-203ENST00000477626 TULP4Q9NRJ4 1543 aa17.16■□□□□ 0.34
PRPF39-203ENST00000477626 SLC52A1Q9NWF4 448 aa17.15■□□□□ 0.34
PRPF39-203ENST00000477626 C14orf93Q9H972 538 aaKnown RBP17.14■□□□□ 0.33
PRPF39-203ENST00000477626 DDX10Q13206 875 aaKnown RBP17.13■□□□□ 0.33
PRPF39-203ENST00000477626 RGL3Q3MIN7 710 aa17.13■□□□□ 0.33
PRPF39-203ENST00000477626 RIMS1Q86UR5 1692 aaKnown RBP17.13■□□□□ 0.33
PRPF39-203ENST00000477626 ST20-MTHFSA0A0A6YYL1 179 aa17.13■□□□□ 0.33
PRPF39-203ENST00000477626 CARD11Q9BXL7 1154 aa17.12■□□□□ 0.33
PRPF39-203ENST00000477626 CPS1P31327 1500 aa17.12■□□□□ 0.33
PRPF39-203ENST00000477626 FBXO31Q5XUX0 539 aaPredicted RBP17.12■□□□□ 0.33
PRPF39-203ENST00000477626 NLRP1Q9C000 1473 aa17.12■□□□□ 0.33
PRPF39-203ENST00000477626 KDM2AQ9Y2K7 1162 aa17.11■□□□□ 0.33
PRPF39-203ENST00000477626 MYT1LQ9UL68 1186 aa17.08■□□□□ 0.33
PRPF39-203ENST00000477626 ADGRB2O60241 1585 aa17.08■□□□□ 0.33
PRPF39-203ENST00000477626 XRN1Q8IZH2 1706 aaKnown RBP17.08■□□□□ 0.32
PRPF39-203ENST00000477626 CCER2I3L3R5 266 aa17.08■□□□□ 0.32
PRPF39-203ENST00000477626 PER1O15534 1290 aaPredicted RBP17.08■□□□□ 0.32
PRPF39-203ENST00000477626 TOPAZ1Q8N9V7 1692 aa17.08■□□□□ 0.32
PRPF39-203ENST00000477626 TECPR2O15040 1411 aa17.07■□□□□ 0.32
PRPF39-203ENST00000477626 ANKRD26Q9UPS8 1709 aa17.06■□□□□ 0.32
PRPF39-203ENST00000477626 CEP170BQ9Y4F5 1589 aaPredicted RBP17.04■□□□□ 0.32
PRPF39-203ENST00000477626 CFAP70Q5T0N1 1121 aa17.04■□□□□ 0.32
PRPF39-203ENST00000477626 DIP2AQ14689 1571 aa17.04■□□□□ 0.32
PRPF39-203ENST00000477626 ADAMTS13Q76LX8 1427 aa17.03■□□□□ 0.32
PRPF39-203ENST00000477626 RIMS2Q9UQ26 1411 aa17.03■□□□□ 0.32
PRPF39-203ENST00000477626 PARD3Q8TEW0 1356 aa17.02■□□□□ 0.32
PRPF39-203ENST00000477626 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.02■□□□□ 0.31
PRPF39-203ENST00000477626 TNRQ92752 1358 aa17.01■□□□□ 0.31
PRPF39-203ENST00000477626 CD163L1Q9NR16 1453 aa17■□□□□ 0.31
PRPF39-203ENST00000477626 AKAP12Q02952 1782 aa17■□□□□ 0.31
PRPF39-203ENST00000477626 ZNF326Q5BKZ1 582 aaKnown RBP17■□□□□ 0.31
PRPF39-203ENST00000477626 PRKRIP1Q9H875 184 aaPredicted RBP16.99■□□□□ 0.31
PRPF39-203ENST00000477626 NRKQ7Z2Y5 1582 aa16.99■□□□□ 0.31
PRPF39-203ENST00000477626 YTHDC2Q9H6S0 1430 aaKnown RBP16.98■□□□□ 0.31
PRPF39-203ENST00000477626 CHD2O14647 1828 aaKnown RBP16.98■□□□□ 0.31
PRPF39-203ENST00000477626 TMEM2Q9UHN6 1383 aa16.98■□□□□ 0.31
PRPF39-203ENST00000477626 MON2Q7Z3U7 1717 aa16.97■□□□□ 0.31
PRPF39-203ENST00000477626 EIF3AQ14152 1382 aaKnown RBP16.97■□□□□ 0.31
PRPF39-203ENST00000477626 SHPRHQ149N8 1683 aa16.97■□□□□ 0.31
PRPF39-203ENST00000477626 KTN1Q86UP2 1357 aaKnown RBP16.96■□□□□ 0.31
PRPF39-203ENST00000477626 NPC1L1Q9UHC9 1359 aa16.96■□□□□ 0.31
PRPF39-203ENST00000477626 CCDC184Q52MB2 194 aa16.95■□□□□ 0.3
PRPF39-203ENST00000477626 KIF20BQ96Q89 1820 aa16.94■□□□□ 0.3
PRPF39-203ENST00000477626 VGFO15240 615 aaPredicted RBP16.93■□□□□ 0.3
PRPF39-203ENST00000477626 PLEKHG1Q9ULL1 1385 aa16.93■□□□□ 0.3
PRPF39-203ENST00000477626 PUS7Q96PZ0 661 aaKnown RBP16.93■□□□□ 0.3
PRPF39-203ENST00000477626 USP54Q70EL1 1684 aa16.92■□□□□ 0.3
PRPF39-203ENST00000477626 LRPPRCP42704 1394 aaKnown RBP16.92■□□□□ 0.3
PRPF39-203ENST00000477626 MARF1Q9Y4F3 1742 aaKnown RBP16.91■□□□□ 0.3
PRPF39-203ENST00000477626 FAM135BQ49AJ0 1406 aa16.91■□□□□ 0.3
PRPF39-203ENST00000477626 PTPRUQ92729 1446 aa16.91■□□□□ 0.3
PRPF39-203ENST00000477626 ABCC11Q96J66 1382 aa16.91■□□□□ 0.3
PRPF39-203ENST00000477626 METP08581 1390 aa16.9■□□□□ 0.3
PRPF39-203ENST00000477626 NWD1Q149M9 1564 aa16.9■□□□□ 0.3
PRPF39-203ENST00000477626 SETD1BQ9UPS6 1966 aaKnown RBP16.89■□□□□ 0.3
PRPF39-203ENST00000477626 INSRP06213 1382 aa16.87■□□□□ 0.29
PRPF39-203ENST00000477626 NALCNQ8IZF0 1738 aa16.87■□□□□ 0.29
PRPF39-203ENST00000477626 AMER1Q5JTC6 1135 aaPredicted RBP16.87■□□□□ 0.29
PRPF39-203ENST00000477626 TMF1P82094 1093 aa16.86■□□□□ 0.29
PRPF39-203ENST00000477626 PTCH1Q13635 1447 aa16.85■□□□□ 0.29
PRPF39-203ENST00000477626 CENPJQ9HC77 1338 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-203ENST00000477626 ANP32CO43423 234 aa16.85■□□□□ 0.29
PRPF39-203ENST00000477626 TMEM132EQ6IEE7 984 aa16.84■□□□□ 0.29
PRPF39-203ENST00000477626 SIRT1Q96EB6 747 aa16.84■□□□□ 0.29
PRPF39-203ENST00000477626 CDC42BPGQ6DT37 1551 aa16.84■□□□□ 0.29
PRPF39-203ENST00000477626 FMN2Q9NZ56 1722 aa16.84■□□□□ 0.29
PRPF39-203ENST00000477626 ITSN1Q15811 1721 aa16.84■□□□□ 0.29
PRPF39-203ENST00000477626 STRCP1A6NGW2 1772 aa16.84■□□□□ 0.29
PRPF39-203ENST00000477626 RGPD8O14715 1765 aaPredicted RBP16.83■□□□□ 0.28
PRPF39-203ENST00000477626 PLEKHH1Q9ULM0 1364 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms