RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 NKX2-3Q8TAU0 364 aa10.9□□□□□ -0.66
UBR3-209ENST00000477461 PXYLP1Q8TE99 480 aa10.9□□□□□ -0.66
UBR3-209ENST00000477461 GPR37O15354 613 aa10.89□□□□□ -0.67
UBR3-209ENST00000477461 OATP04181 439 aa10.89□□□□□ -0.67
UBR3-209ENST00000477461 NLRP7Q8WX94 980 aa10.89□□□□□ -0.67
UBR3-209ENST00000477461 GPIHBP1Q8IV16 184 aa10.88□□□□□ -0.67
UBR3-209ENST00000477461 NECTIN2Q92692 538 aa10.88□□□□□ -0.67
UBR3-209ENST00000477461 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.86□□□□□ -0.67
UBR3-209ENST00000477461 METTL3Q86U44 580 aaKnown RBP10.86□□□□□ -0.67
UBR3-209ENST00000477461 RGS20O76081 388 aa10.85□□□□□ -0.67
UBR3-209ENST00000477461 SLC10A3P09131 477 aa10.85□□□□□ -0.67
UBR3-209ENST00000477461 PCDHB3Q9Y5E6 796 aa10.85□□□□□ -0.67
UBR3-209ENST00000477461 PPP1R18Q6NYC8 613 aa10.84□□□□□ -0.67
UBR3-209ENST00000477461 BLOC1S3Q6QNY0 202 aa10.84□□□□□ -0.67
UBR3-209ENST00000477461 CFHP08603 1231 aa10.83□□□□□ -0.68
UBR3-209ENST00000477461 KMT5BQ4FZB7 885 aa10.81□□□□□ -0.68
UBR3-209ENST00000477461 PRR14Q9BWN1 585 aa10.81□□□□□ -0.68
UBR3-209ENST00000477461 IRX2Q9BZI1 471 aaPredicted RBP10.81□□□□□ -0.68
UBR3-209ENST00000477461 TULP1O00294 542 aaPredicted RBP10.8□□□□□ -0.68
UBR3-209ENST00000477461 ZPR1O75312 459 aa10.8□□□□□ -0.68
UBR3-209ENST00000477461 PHOX2BQ99453 314 aa10.8□□□□□ -0.68
UBR3-209ENST00000477461 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.79□□□□□ -0.68
UBR3-209ENST00000477461 DDX11L8A8MPP1 907 aa10.78□□□□□ -0.68
UBR3-209ENST00000477461 ACTN4O43707 911 aaKnown RBP10.78□□□□□ -0.68
UBR3-209ENST00000477461 RDH13Q8NBN7 331 aa10.78□□□□□ -0.68
UBR3-209ENST00000477461 TLL1O43897 1013 aa10.77□□□□□ -0.69
UBR3-209ENST00000477461 PUS10Q3MIT2 529 aaKnown RBP10.77□□□□□ -0.69
UBR3-209ENST00000477461 PRKD2Q9BZL6 878 aa10.77□□□□□ -0.69
UBR3-209ENST00000477461 DAXXQ9UER7 740 aaPredicted RBP10.77□□□□□ -0.69
UBR3-209ENST00000477461 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
UBR3-209ENST00000477461 GGCXP38435 758 aa10.71□□□□□ -0.69
UBR3-209ENST00000477461 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.71□□□□□ -0.69
UBR3-209ENST00000477461 PPEF1O14829 653 aaPredicted RBP10.7□□□□□ -0.7
UBR3-209ENST00000477461 SCUBE3Q8IX30 993 aa10.7□□□□□ -0.7
UBR3-209ENST00000477461 IRF6O14896 467 aa10.69□□□□□ -0.7
UBR3-209ENST00000477461 NR1I2O75469 434 aa10.69□□□□□ -0.7
UBR3-209ENST00000477461 MAP2K5Q13163 448 aa10.69□□□□□ -0.7
UBR3-209ENST00000477461 S1PR4O95977 384 aa10.68□□□□□ -0.7
UBR3-209ENST00000477461 FUT2Q10981 343 aa10.68□□□□□ -0.7
UBR3-209ENST00000477461 RNF223E7ERA6 249 aa10.67□□□□□ -0.7
UBR3-209ENST00000477461 MDM2Q00987 491 aaPredicted RBP10.66□□□□□ -0.7
UBR3-209ENST00000477461 LMOD2Q6P5Q4 547 aa10.66□□□□□ -0.7
UBR3-209ENST00000477461 TMUB1Q9BVT8 246 aa10.66□□□□□ -0.7
UBR3-209ENST00000477461 MINK1Q8N4C8 1332 aaPredicted RBP10.65□□□□□ -0.7
UBR3-209ENST00000477461 GFRA3O60609 400 aa10.65□□□□□ -0.7
UBR3-209ENST00000477461 GCGRP47871 477 aa10.65□□□□□ -0.7
UBR3-209ENST00000477461 SULF1Q8IWU6 871 aa10.65□□□□□ -0.7
UBR3-209ENST00000477461 Q6ZNB5 142 aa10.64□□□□□ -0.71
UBR3-209ENST00000477461 CCDC102AQ96A19 550 aa10.64□□□□□ -0.71
UBR3-209ENST00000477461 ADH1BP00325 375 aa10.63□□□□□ -0.71
UBR3-209ENST00000477461 ATP6V1AP38606 617 aa10.63□□□□□ -0.71
UBR3-209ENST00000477461 MORN1Q5T089 497 aa10.63□□□□□ -0.71
UBR3-209ENST00000477461 KRI1Q8N9T8 703 aaKnown RBP10.63□□□□□ -0.71
UBR3-209ENST00000477461 V9GY48 417 aaPredicted RBP10.63□□□□□ -0.71
UBR3-209ENST00000477461 SPSB2Q99619 263 aa10.62□□□□□ -0.71
UBR3-209ENST00000477461 SLC6A16Q9GZN6 736 aa10.62□□□□□ -0.71
UBR3-209ENST00000477461 SLC27A5Q9Y2P5 690 aa10.62□□□□□ -0.71
UBR3-209ENST00000477461 SLC19A1P41440 591 aa10.6□□□□□ -0.71
UBR3-209ENST00000477461 EMID1Q96A84 441 aaPredicted RBP10.59□□□□□ -0.71
UBR3-209ENST00000477461 CD46P15529 392 aa10.57□□□□□ -0.72
UBR3-209ENST00000477461 LIAT1Q6ZQX7 453 aa10.57□□□□□ -0.72
UBR3-209ENST00000477461 ANKLE1Q8NAG6 615 aa10.57□□□□□ -0.72
UBR3-209ENST00000477461 ZC3H15Q8WU90 426 aaKnown RBP10.56□□□□□ -0.72
UBR3-209ENST00000477461 THAP11Q96EK4 314 aa10.56□□□□□ -0.72
UBR3-209ENST00000477461 PDZRN3Q9UPQ7 1066 aa10.56□□□□□ -0.72
UBR3-209ENST00000477461 FMNL1O95466 1100 aaPredicted RBP10.55□□□□□ -0.72
UBR3-209ENST00000477461 PLA2G2CQ5R387 149 aa10.55□□□□□ -0.72
UBR3-209ENST00000477461 FAM160A2Q8N612 972 aaPredicted RBP10.55□□□□□ -0.72
UBR3-209ENST00000477461 HLA-CQ95604 372 aa10.55□□□□□ -0.72
UBR3-209ENST00000477461 RNF19BQ6ZMZ0 732 aa10.54□□□□□ -0.72
UBR3-209ENST00000477461 KDM4AO75164 1064 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 LAPTM4AQ15012 233 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 GRIPAP1Q4V328 841 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 SPRYD7Q5W111 196 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 BRICD5Q6PL45 260 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 REPIN1Q9BWE0 567 aaKnown RBP10.53□□□□□ -0.72
UBR3-209ENST00000477461 GPCPD1Q9NPB8 672 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 PRDM9Q9NQV7 894 aa10.53□□□□□ -0.72
UBR3-209ENST00000477461 ZMYND10O75800 440 aa10.52□□□□□ -0.73
UBR3-209ENST00000477461 CLCN1P35523 988 aa10.52□□□□□ -0.73
UBR3-209ENST00000477461 BARGINQ6ZT62 677 aa10.52□□□□□ -0.73
UBR3-209ENST00000477461 FAM217BQ9NTX9 383 aaPredicted RBP10.51□□□□□ -0.73
UBR3-209ENST00000477461 NRG2O14511 850 aaPredicted RBP10.5□□□□□ -0.73
UBR3-209ENST00000477461 GUCA2AQ02747 115 aa10.5□□□□□ -0.73
UBR3-209ENST00000477461 FCF1Q9Y324 198 aaKnown RBP10.5□□□□□ -0.73
UBR3-209ENST00000477461 ZNF697Q5TEC3 545 aa10.49□□□□□ -0.73
UBR3-209ENST00000477461 TRAF7Q6Q0C0 670 aa10.49□□□□□ -0.73
UBR3-209ENST00000477461 TRIM67Q6ZTA4 783 aa10.49□□□□□ -0.73
UBR3-209ENST00000477461 ZNF598Q86UK7 904 aaKnown RBP10.49□□□□□ -0.73
UBR3-209ENST00000477461 LCE2BO14633 110 aa10.48□□□□□ -0.73
UBR3-209ENST00000477461 SSTR3P32745 418 aaPredicted RBP10.47□□□□□ -0.73
UBR3-209ENST00000477461 TTLL12Q14166 644 aaPredicted RBP10.47□□□□□ -0.73
UBR3-209ENST00000477461 SALL2Q9Y467 1007 aaPredicted RBP10.47□□□□□ -0.73
UBR3-209ENST00000477461 TNFRSF10AO00220 468 aa10.46□□□□□ -0.73
UBR3-209ENST00000477461 NUTM1Q86Y26 1132 aa10.46□□□□□ -0.73
UBR3-209ENST00000477461 FOXC1Q12948 553 aa10.45□□□□□ -0.74
UBR3-209ENST00000477461 Q3C1V9 767 aa10.45□□□□□ -0.74
UBR3-209ENST00000477461 SYMPKQ92797 1274 aaKnown RBP10.45□□□□□ -0.74
UBR3-209ENST00000477461 HOXA2O43364 376 aa10.44□□□□□ -0.74
UBR3-209ENST00000477461 USP46P62068 366 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms