RNA–Protein interactions for RNA: ENST00000476772.5

VEGFA-211, Transcript of vascular endothelial growth factor A, human

TSL 1 (best)

Gene VEGFA, Length 1,683 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-211	ENST00000476772	USP47	Q96K76	1375 aa		40.71	■■■■■ 4.11
VEGFA-211	ENST00000476772	NBPF1	Q3BBV0	1214 aa		40.7	■■■■■ 4.11
VEGFA-211	ENST00000476772	GPRASP1	Q5JY77	1395 aa		40.7	■■■■■ 4.11
VEGFA-211	ENST00000476772	CEBPA	P49715	358 aa	Predicted RBP	40.69	■■■■■ 4.1
VEGFA-211	ENST00000476772	LAMC1	P11047	1609 aa		40.68	■■■■■ 4.1
VEGFA-211	ENST00000476772	DIEXF	Q68CQ4	756 aa	Known RBP	40.67	■■■■■ 4.1
VEGFA-211	ENST00000476772	ADAMTSL3	P82987	1691 aa		40.67	■■■■■ 4.1
VEGFA-211	ENST00000476772	RIMS1	Q86UR5	1692 aa	Known RBP	40.66	■■■■■ 4.1
VEGFA-211	ENST00000476772	KIAA1210	Q9ULL0	1709 aa		40.66	■■■■■ 4.1
VEGFA-211	ENST00000476772	STAG3	Q9UJ98	1225 aa		40.64	■■■■■ 4.1
VEGFA-211	ENST00000476772	A2ML1	A8K2U0	1454 aa		40.63	■■■■■ 4.09
VEGFA-211	ENST00000476772	PIK3C2G	O75747	1445 aa		40.59	■■■■■ 4.09
VEGFA-211	ENST00000476772	PLPPR3	Q6T4P5	718 aa		40.57	■■■■■ 4.09
VEGFA-211	ENST00000476772	NUTM2D	Q5VT03	806 aa	Predicted RBP	40.56	■■■■■ 4.08
VEGFA-211	ENST00000476772	VGF	O15240	615 aa	Predicted RBP	40.55	■■■■■ 4.08
VEGFA-211	ENST00000476772	ZFYVE9	O95405	1425 aa		40.54	■■■■■ 4.08
VEGFA-211	ENST00000476772	NLRP1	Q9C000	1473 aa		40.54	■■■■■ 4.08
VEGFA-211	ENST00000476772	KDM5A	P29375	1690 aa	Known RBP	40.54	■■■■■ 4.08
VEGFA-211	ENST00000476772	CFAP70	Q5T0N1	1121 aa		40.53	■■■■■ 4.08
VEGFA-211	ENST00000476772	UBR1	Q8IWV7	1749 aa		40.51	■■■■■ 4.08
VEGFA-211	ENST00000476772	IQGAP1	P46940	1657 aa		40.49	■■■■■ 4.07
VEGFA-211	ENST00000476772	RIMS2	Q9UQ26	1411 aa		40.46	■■■■■ 4.07
VEGFA-211	ENST00000476772	ST20-MTHFS	A0A0A6YYL1	179 aa		40.44	■■■■■ 4.06
VEGFA-211	ENST00000476772	C14orf93	Q9H972	538 aa	Known RBP	40.44	■■■■■ 4.06
VEGFA-211	ENST00000476772	SETBP1	Q9Y6X0	1596 aa		40.44	■■■■■ 4.06
VEGFA-211	ENST00000476772	MYO3A	Q8NEV4	1616 aa		40.43	■■■■■ 4.06
VEGFA-211	ENST00000476772	POLR1A	O95602	1720 aa	Predicted RBP	40.42	■■■■■ 4.06
VEGFA-211	ENST00000476772	SCAF11	Q99590	1463 aa	Known RBP	40.42	■■■■■ 4.06
VEGFA-211	ENST00000476772	WASHC2A	Q641Q2	1341 aa		40.42	■■■■■ 4.06
VEGFA-211	ENST00000476772	C11orf95	C9JLR9	678 aa	Predicted RBP	40.41	■■■■■ 4.06
VEGFA-211	ENST00000476772	DDX10	Q13206	875 aa	Known RBP	40.37	■■■■■ 4.05
VEGFA-211	ENST00000476772	ADGRB1	O14514	1584 aa		40.37	■■■■■ 4.05
VEGFA-211	ENST00000476772	CCDC7	Q96M83	1385 aa		40.36	■■■■■ 4.05
VEGFA-211	ENST00000476772	TMEM2	Q9UHN6	1383 aa		40.33	■■■■■ 4.05
VEGFA-211	ENST00000476772	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	40.31	■■■■■ 4.04
VEGFA-211	ENST00000476772	KIF7	Q2M1P5	1343 aa		40.31	■■■■■ 4.04
VEGFA-211	ENST00000476772	SENP3	Q9H4L4	574 aa	Predicted RBP	40.31	■■■■■ 4.04
VEGFA-211	ENST00000476772	TMEM132E	Q6IEE7	984 aa		40.27	■■■■■ 4.04
VEGFA-211	ENST00000476772	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	40.27	■■■■■ 4.04
VEGFA-211	ENST00000476772	PTPRM	P28827	1452 aa		40.27	■■■■■ 4.04
VEGFA-211	ENST00000476772	EIF3A	Q14152	1382 aa	Known RBP	40.27	■■■■■ 4.04
VEGFA-211	ENST00000476772	ALK	Q9UM73	1620 aa		40.26	■■■■■ 4.04
VEGFA-211	ENST00000476772	ASXL1	Q8IXJ9	1541 aa		40.26	■■■■■ 4.04
VEGFA-211	ENST00000476772	HDGF	P51858	240 aa	Known RBP	40.24	■■■■■ 4.03
VEGFA-211	ENST00000476772	TESK2	Q96S53	571 aa		40.24	■■■■■ 4.03
VEGFA-211	ENST00000476772	SLIT1	O75093	1534 aa		40.21	■■■■■ 4.03
VEGFA-211	ENST00000476772	NRXN3	Q9Y4C0	1643 aa		40.21	■■■■■ 4.03
VEGFA-211	ENST00000476772	ARHGAP23	Q9P227	1491 aa		40.2	■■■■■ 4.03
VEGFA-211	ENST00000476772	ZNF142	P52746	1687 aa	Predicted RBP	40.2	■■■■■ 4.03
VEGFA-211	ENST00000476772	SETD1A	O15047	1707 aa	Known RBP	40.19	■■■■■ 4.02
VEGFA-211	ENST00000476772	THEMIS	Q8N1K5	641 aa	Predicted RBP	40.17	■■■■■ 4.02
VEGFA-211	ENST00000476772	SETD1B	Q9UPS6	1966 aa	Known RBP	40.17	■■■■■ 4.02
VEGFA-211	ENST00000476772	TRAK1	Q9UPV9	953 aa		40.16	■■■■■ 4.02
VEGFA-211	ENST00000476772	LTK	P29376	864 aa		40.14	■■■■■ 4.02
VEGFA-211	ENST00000476772	POLR3GL	Q9BT43	218 aa		40.13	■■■■■ 4.01
VEGFA-211	ENST00000476772	DISP3	Q9P2K9	1392 aa		40.13	■■■■■ 4.01
VEGFA-211	ENST00000476772	ARHGEF28	Q8N1W1	1705 aa	Known RBP	40.11	■■■■■ 4.01
VEGFA-211	ENST00000476772	TXNDC2	Q86VQ3	553 aa		40.11	■■■■■ 4.01
VEGFA-211	ENST00000476772	MIER1	Q8N108	512 aa		40.11	■■■■■ 4.01
VEGFA-211	ENST00000476772	TMF1	P82094	1093 aa		40.09	■■■■■ 4.01
VEGFA-211	ENST00000476772	EID1	Q9Y6B2	187 aa		40.09	■■■■■ 4.01
VEGFA-211	ENST00000476772	PLEKHG1	Q9ULL1	1385 aa		40.08	■■■■■ 4.01
VEGFA-211	ENST00000476772	YTHDC2	Q9H6S0	1430 aa	Known RBP	40.07	■■■■■ 4.01
VEGFA-211	ENST00000476772	CENPJ	Q9HC77	1338 aa	Predicted RBP	40.06	■■■■■ 4
VEGFA-211	ENST00000476772	QRICH2	Q9H0J4	1663 aa		40.05	■■■■■ 4
VEGFA-211	ENST00000476772	BCAN	Q96GW7	911 aa		40.03	■■■■■ 4
VEGFA-211	ENST00000476772	STK26	Q9P289	416 aa		40.03	■■■■■ 4
VEGFA-211	ENST00000476772	ADAMTS13	Q76LX8	1427 aa		40.01	■■■■■ 4
VEGFA-211	ENST00000476772	SBNO2	Q9Y2G9	1366 aa		40.01	■■■■□ 3.99
VEGFA-211	ENST00000476772	MET	P08581	1390 aa		39.99	■■■■□ 3.99
VEGFA-211	ENST00000476772	LRPPRC	P42704	1394 aa	Known RBP	39.96	■■■■□ 3.99
VEGFA-211	ENST00000476772	KDM4F	A0A1W2PPD8	638 aa		39.93	■■■■□ 3.98
VEGFA-211	ENST00000476772	SLC24A1	O60721	1099 aa		39.93	■■■■□ 3.98
VEGFA-211	ENST00000476772	MED14	O60244	1454 aa		39.93	■■■■□ 3.98
VEGFA-211	ENST00000476772	DLC1	Q96QB1	1528 aa		39.92	■■■■□ 3.98
VEGFA-211	ENST00000476772	CDCA8	Q53HL2	280 aa		39.89	■■■■□ 3.98
VEGFA-211	ENST00000476772	ABCC11	Q96J66	1382 aa		39.88	■■■■□ 3.97
VEGFA-211	ENST00000476772	KNDC1	Q76NI1	1749 aa		39.87	■■■■□ 3.97
VEGFA-211	ENST00000476772	DIP2A	Q14689	1571 aa		39.86	■■■■□ 3.97
VEGFA-211	ENST00000476772	PRAM1	Q96QH2	718 aa		39.86	■■■■□ 3.97
VEGFA-211	ENST00000476772	SLC26A8	Q96RN1	970 aa		39.86	■■■■□ 3.97
VEGFA-211	ENST00000476772	ANKLE2	Q86XL3	938 aa		39.85	■■■■□ 3.97
VEGFA-211	ENST00000476772	ANP32C	O43423	234 aa		39.83	■■■■□ 3.97
VEGFA-211	ENST00000476772	SAFB2	Q14151	953 aa	Known RBP eCLIP	39.83	■■■■□ 3.97
VEGFA-211	ENST00000476772	POGK	Q9P215	609 aa		39.82	■■■■□ 3.96
VEGFA-211	ENST00000476772	TECPR2	O15040	1411 aa		39.81	■■■■□ 3.96
VEGFA-211	ENST00000476772	TBX22	Q9Y458	520 aa		39.8	■■■■□ 3.96
VEGFA-211	ENST00000476772	CPS1	P31327	1500 aa		39.79	■■■■□ 3.96
VEGFA-211	ENST00000476772	TULP4	Q9NRJ4	1543 aa		39.79	■■■■□ 3.96
VEGFA-211	ENST00000476772	MYOM1	P52179	1685 aa		39.79	■■■■□ 3.96
VEGFA-211	ENST00000476772	PLEKHH1	Q9ULM0	1364 aa		39.75	■■■■□ 3.95
VEGFA-211	ENST00000476772	PTPRU	Q92729	1446 aa		39.75	■■■■□ 3.95
VEGFA-211	ENST00000476772	WAPL	Q7Z5K2	1190 aa		39.73	■■■■□ 3.95
VEGFA-211	ENST00000476772	EVC2	Q86UK5	1308 aa		39.73	■■■■□ 3.95
VEGFA-211	ENST00000476772	MINK1	Q8N4C8	1332 aa	Predicted RBP	39.72	■■■■□ 3.95
VEGFA-211	ENST00000476772	FAM135B	Q49AJ0	1406 aa		39.72	■■■■□ 3.95
VEGFA-211	ENST00000476772	SIRT1	Q96EB6	747 aa		39.7	■■■■□ 3.95
VEGFA-211	ENST00000476772	PANK3	Q9H999	370 aa		39.67	■■■■□ 3.94
VEGFA-211	ENST00000476772	ROBO2	Q9HCK4	1378 aa		39.67	■■■■□ 3.94
VEGFA-211	ENST00000476772	NPHP4	O75161	1426 aa	Predicted RBP	39.66	■■■■□ 3.94

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms