RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 TXNDC2Q86VQ3 553 aa6.48□□□□□ -1.37
CCDC39-204ENST00000476379 RRP1P56182 461 aaKnown RBP6.47□□□□□ -1.37
CCDC39-204ENST00000476379 DENND4BO75064 1496 aaPredicted RBP6.47□□□□□ -1.37
CCDC39-204ENST00000476379 ZBED9Q6R2W3 1325 aa6.47□□□□□ -1.37
CCDC39-204ENST00000476379 ADGRF5Q8IZF2 1346 aa6.47□□□□□ -1.37
CCDC39-204ENST00000476379 UGGT1Q9NYU2 1555 aa6.47□□□□□ -1.37
CCDC39-204ENST00000476379 ABCC10Q5T3U5 1492 aa6.46□□□□□ -1.37
CCDC39-204ENST00000476379 FOXD4L5Q5VV16 416 aaPredicted RBP6.46□□□□□ -1.37
CCDC39-204ENST00000476379 FOXD4L4Q8WXT5 416 aaPredicted RBP6.46□□□□□ -1.37
CCDC39-204ENST00000476379 DDX17Q92841 729 aaKnown RBP6.46□□□□□ -1.37
CCDC39-204ENST00000476379 ADAMTS8Q9UP79 889 aa6.46□□□□□ -1.37
CCDC39-204ENST00000476379 PANK1Q8TE04 598 aa6.46□□□□□ -1.38
CCDC39-204ENST00000476379 MFAP1P55081 439 aaKnown RBP6.46□□□□□ -1.38
CCDC39-204ENST00000476379 FOXD4L6Q3SYB3 417 aaPredicted RBP6.46□□□□□ -1.38
CCDC39-204ENST00000476379 FOXD4L3Q6VB84 417 aaPredicted RBP6.46□□□□□ -1.38
CCDC39-204ENST00000476379 FTSJ3Q8IY81 847 aaKnown RBP6.46□□□□□ -1.38
CCDC39-204ENST00000476379 UPF2Q9HAU5 1272 aaKnown RBP6.45□□□□□ -1.38
CCDC39-204ENST00000476379 BCAR3O75815 825 aa6.45□□□□□ -1.38
CCDC39-204ENST00000476379 CCDC141Q6ZP82 1450 aa6.45□□□□□ -1.38
CCDC39-204ENST00000476379 NOL8Q76FK4 1167 aaKnown RBP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 SAMD9LQ8IVG5 1584 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 MBD5Q9P267 1494 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 U2AF1L5P0DN76 240 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 TMF1P82094 1093 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 U2AF1Q01081 240 aaKnown RBP eCLIP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 AMER1Q5JTC6 1135 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 POGKQ9P215 609 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 MAPKBP1O60336 1514 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 PIP4K2BP78356 416 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 NAP1L5Q96NT1 182 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 KTN1Q86UP2 1357 aaKnown RBP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 A0A0G2JS52 829 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 FRAT2O75474 233 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-204ENST00000476379 PMFBP1Q8TBY8 1022 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 KANK1Q14678 1352 aa6.44□□□□□ -1.38
CCDC39-204ENST00000476379 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.43□□□□□ -1.38
CCDC39-204ENST00000476379 FANCIQ9NVI1 1328 aa6.43□□□□□ -1.38
CCDC39-204ENST00000476379 CABP2Q9NPB3 220 aa6.43□□□□□ -1.38
CCDC39-204ENST00000476379 SRPK2P78362 688 aaKnown RBP6.42□□□□□ -1.38
CCDC39-204ENST00000476379 NLRP13Q86W25 1043 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 SHROOM2Q13796 1616 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 MORC1Q86VD1 984 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 PNISRQ8TF01 805 aaKnown RBP6.42□□□□□ -1.38
CCDC39-204ENST00000476379 CCDC144AA2RUR9 1427 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 HFM1A2PYH4 1435 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 CNTLNQ9NXG0 1405 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 LTKP29376 864 aa6.42□□□□□ -1.38
CCDC39-204ENST00000476379 ITPRIPQ8IWB1 547 aa6.41□□□□□ -1.38
CCDC39-204ENST00000476379 KDM4FA0A1W2PPD8 638 aa6.41□□□□□ -1.38
CCDC39-204ENST00000476379 PLCB2Q00722 1185 aa6.41□□□□□ -1.38
CCDC39-204ENST00000476379 BCL11BQ9C0K0 894 aaPredicted RBP6.41□□□□□ -1.38
CCDC39-204ENST00000476379 GOLGA2Q08379 1002 aa6.4□□□□□ -1.38
CCDC39-204ENST00000476379 CFAP43Q8NDM7 1665 aa6.4□□□□□ -1.38
CCDC39-204ENST00000476379 NFKBIBQ15653 356 aa6.4□□□□□ -1.38
CCDC39-204ENST00000476379 MYBBP1AQ9BQG0 1328 aaKnown RBP6.4□□□□□ -1.38
CCDC39-204ENST00000476379 A2MP01023 1474 aa6.4□□□□□ -1.39
CCDC39-204ENST00000476379 CDC42BPAQ5VT25 1732 aa6.4□□□□□ -1.39
CCDC39-204ENST00000476379 DHX29Q7Z478 1369 aaKnown RBP6.4□□□□□ -1.39
CCDC39-204ENST00000476379 ZMYM3Q14202 1370 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 RSPH4AQ5TD94 716 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 MPNDQ8N594 471 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 PRAM1Q96QH2 718 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 CDC42BPBQ9Y5S2 1711 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 POGZQ7Z3K3 1410 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 TNNQ9UQP3 1299 aa6.39□□□□□ -1.39
CCDC39-204ENST00000476379 NECTIN2Q92692 538 aa6.38□□□□□ -1.39
CCDC39-204ENST00000476379 TSR2Q969E8 191 aaKnown RBP6.38□□□□□ -1.39
CCDC39-204ENST00000476379 DDRGK1Q96HY6 314 aa6.38□□□□□ -1.39
CCDC39-204ENST00000476379 C1orf115Q9H7X2 142 aa6.38□□□□□ -1.39
CCDC39-204ENST00000476379 LTV1Q96GA3 475 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-204ENST00000476379 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-204ENST00000476379 SLC12A5Q9H2X9 1139 aa6.38□□□□□ -1.39
CCDC39-204ENST00000476379 ZNF518AQ6AHZ1 1483 aa6.38□□□□□ -1.39
CCDC39-204ENST00000476379 ERBINQ96RT1 1412 aa6.38□□□□□ -1.39
CCDC39-204ENST00000476379 SMC4Q9NTJ3 1288 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 UHRF1BP1LA0JNW5 1464 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 RALBP1Q15311 655 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 GGNBP2Q9H3C7 697 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 ZRANB1Q9UGI0 708 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 MAPK8IP3Q9UPT6 1336 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 USP35Q9P2H5 1018 aa6.37□□□□□ -1.39
CCDC39-204ENST00000476379 DIP2BQ9P265 1576 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 NOS1P29475 1434 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 HMOX1P09601 288 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 GSE1Q14687 1217 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 ANKRD30BQ9BXX2 1392 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 ATP7AQ04656 1500 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 BECN1Q14457 450 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 PZPP20742 1482 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 HSP90AB1P08238 724 aaKnown RBP6.36□□□□□ -1.39
CCDC39-204ENST00000476379 LNPKQ9C0E8 428 aa6.36□□□□□ -1.39
CCDC39-204ENST00000476379 KCNA6P17658 529 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 EID1Q9Y6B2 187 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 NPATQ14207 1427 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 CENPJQ9HC77 1338 aaPredicted RBP6.35□□□□□ -1.39
CCDC39-204ENST00000476379 CABLES1Q8TDN4 633 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 FOXO3O43524 673 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 DTNBO60941 627 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 THUMPD2Q9BTF0 503 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms