RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PNPLA6Q8IY17 1366 aa8.12□□□□□ -1.11
USP4-209ENST00000475873 CCNB3Q8WWL7 1395 aa8.12□□□□□ -1.11
USP4-209ENST00000475873 EHMT2Q96KQ7 1210 aa8.12□□□□□ -1.11
USP4-209ENST00000475873 EID1Q9Y6B2 187 aa8.12□□□□□ -1.11
USP4-209ENST00000475873 EEA1Q15075 1411 aa8.12□□□□□ -1.11
USP4-209ENST00000475873 ASXL1Q8IXJ9 1541 aa8.11□□□□□ -1.11
USP4-209ENST00000475873 CCDC141Q6ZP82 1450 aa8.11□□□□□ -1.11
USP4-209ENST00000475873 ATRNO75882 1429 aa8.11□□□□□ -1.11
USP4-209ENST00000475873 EFCAB6Q5THR3 1501 aa8.1□□□□□ -1.11
USP4-209ENST00000475873 PSDA5PKW4 1024 aaPredicted RBP8.1□□□□□ -1.11
USP4-209ENST00000475873 HRCP23327 699 aa8.1□□□□□ -1.11
USP4-209ENST00000475873 YY1P25490 414 aa8.1□□□□□ -1.11
USP4-209ENST00000475873 FOXD1Q16676 465 aa8.1□□□□□ -1.11
USP4-209ENST00000475873 DDX17Q92841 729 aaKnown RBP8.1□□□□□ -1.11
USP4-209ENST00000475873 CCDC125Q86Z20 511 aa8.09□□□□□ -1.11
USP4-209ENST00000475873 NGLY1Q96IV0 654 aa8.09□□□□□ -1.11
USP4-209ENST00000475873 FYCO1Q9BQS8 1478 aa8.08□□□□□ -1.12
USP4-209ENST00000475873 ADAMTS2O95450 1211 aa8.08□□□□□ -1.12
USP4-209ENST00000475873 BLMP54132 1417 aaPredicted RBP8.08□□□□□ -1.12
USP4-209ENST00000475873 ARHGAP31Q2M1Z3 1444 aa8.08□□□□□ -1.12
USP4-209ENST00000475873 NCOA3Q9Y6Q9 1424 aa8.08□□□□□ -1.12
USP4-209ENST00000475873 IDI1Q13907 227 aa8.07□□□□□ -1.12
USP4-209ENST00000475873 USP21Q9UK80 565 aa8.07□□□□□ -1.12
USP4-209ENST00000475873 UTRNP46939 3433 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 CEP350Q5VT06 3117 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 ZFYVE9O95405 1425 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 MST1RQ04912 1400 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 UBTFP17480 764 aaKnown RBP8.06□□□□□ -1.12
USP4-209ENST00000475873 CADPS2Q86UW7 1296 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 FNBP4Q8N3X1 1017 aaPredicted RBP8.06□□□□□ -1.12
USP4-209ENST00000475873 C19orf44Q9H6X5 657 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 TRPC5Q9UL62 973 aaPredicted RBP8.06□□□□□ -1.12
USP4-209ENST00000475873 EIF2AK4Q9P2K8 1649 aaKnown RBP8.06□□□□□ -1.12
USP4-209ENST00000475873 BRWD3Q6RI45 1802 aa8.06□□□□□ -1.12
USP4-209ENST00000475873 ADGRB3O60242 1522 aa8.05□□□□□ -1.12
USP4-209ENST00000475873 LRRC59Q96AG4 307 aaKnown RBP8.04□□□□□ -1.12
USP4-209ENST00000475873 PLEKHG1Q9ULL1 1385 aa8.04□□□□□ -1.12
USP4-209ENST00000475873 GLI3P10071 1580 aa8.04□□□□□ -1.12
USP4-209ENST00000475873 ARHGEF5Q12774 1597 aa8.04□□□□□ -1.12
USP4-209ENST00000475873 ADAMTS13Q76LX8 1427 aa8.03□□□□□ -1.12
USP4-209ENST00000475873 PTPRUQ92729 1446 aa8.03□□□□□ -1.12
USP4-209ENST00000475873 MYO5BQ9ULV0 1848 aa8.03□□□□□ -1.12
USP4-209ENST00000475873 ATF3P18847 181 aa8.03□□□□□ -1.12
USP4-209ENST00000475873 C14orf37Q86TY3 774 aa8.03□□□□□ -1.12
USP4-209ENST00000475873 UNC13BO14795 1591 aa8.02□□□□□ -1.13
USP4-209ENST00000475873 MTUS2Q5JR59 1369 aa8.02□□□□□ -1.13
USP4-209ENST00000475873 NOS1P29475 1434 aa8.02□□□□□ -1.13
USP4-209ENST00000475873 DCCP43146 1447 aa8.02□□□□□ -1.13
USP4-209ENST00000475873 LAMC1P11047 1609 aa8.01□□□□□ -1.13
USP4-209ENST00000475873 STAG3Q9UJ98 1225 aa8.01□□□□□ -1.13
USP4-209ENST00000475873 TBX22Q9Y458 520 aa8.01□□□□□ -1.13
USP4-209ENST00000475873 CEP162Q5TB80 1403 aa8.01□□□□□ -1.13
USP4-209ENST00000475873 TRPM2O94759 1503 aa8□□□□□ -1.13
USP4-209ENST00000475873 SENP3-EIF4A1A0A087X0R7 540 aa8□□□□□ -1.13
USP4-209ENST00000475873 GJD4Q96KN9 370 aaPredicted RBP8□□□□□ -1.13
USP4-209ENST00000475873 PTCH1Q13635 1447 aa8□□□□□ -1.13
USP4-209ENST00000475873 SPHKAPQ2M3C7 1700 aa8□□□□□ -1.13
USP4-209ENST00000475873 MYOM2P54296 1465 aa8□□□□□ -1.13
USP4-209ENST00000475873 RALGAPBQ86X10 1494 aa8□□□□□ -1.13
USP4-209ENST00000475873 R3HDM1Q15032 1099 aaKnown RBP7.99□□□□□ -1.13
USP4-209ENST00000475873 BCANQ96GW7 911 aa7.99□□□□□ -1.13
USP4-209ENST00000475873 RIMS2Q9UQ26 1411 aa7.99□□□□□ -1.13
USP4-209ENST00000475873 COL22A1Q8NFW1 1626 aaPredicted RBP7.99□□□□□ -1.13
USP4-209ENST00000475873 EHBP1L1Q8N3D4 1523 aa7.98□□□□□ -1.13
USP4-209ENST00000475873 ZNF784Q8NCA9 323 aaPredicted RBP7.98□□□□□ -1.13
USP4-209ENST00000475873 CAMTA1Q9Y6Y1 1673 aa7.98□□□□□ -1.13
USP4-209ENST00000475873 XRN1Q8IZH2 1706 aaKnown RBP7.98□□□□□ -1.13
USP4-209ENST00000475873 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.98□□□□□ -1.13
USP4-209ENST00000475873 RSPH4AQ5TD94 716 aa7.97□□□□□ -1.13
USP4-209ENST00000475873 MARF1Q9Y4F3 1742 aaKnown RBP7.97□□□□□ -1.13
USP4-209ENST00000475873 SOS2Q07890 1332 aaPredicted RBP7.97□□□□□ -1.13
USP4-209ENST00000475873 TMEM131LA2VDJ0 1609 aa7.96□□□□□ -1.13
USP4-209ENST00000475873 GCC2Q8IWJ2 1684 aa7.96□□□□□ -1.13
USP4-209ENST00000475873 NALCNQ8IZF0 1738 aa7.96□□□□□ -1.14
USP4-209ENST00000475873 AMOTL2Q9Y2J4 779 aa7.96□□□□□ -1.14
USP4-209ENST00000475873 LMTK2Q8IWU2 1503 aa7.96□□□□□ -1.14
USP4-209ENST00000475873 DUOX2Q9NRD8 1548 aa7.96□□□□□ -1.14
USP4-209ENST00000475873 PIK3R4Q99570 1358 aa7.96□□□□□ -1.14
USP4-209ENST00000475873 SLIT2O94813 1529 aa7.95□□□□□ -1.14
USP4-209ENST00000475873 TSPY4P0CV99 314 aa7.95□□□□□ -1.14
USP4-209ENST00000475873 TSPY10P0CW01 314 aa7.95□□□□□ -1.14
USP4-209ENST00000475873 EN1Q05925 392 aaPredicted RBP7.95□□□□□ -1.14
USP4-209ENST00000475873 C1orf167Q5SNV9 1468 aa7.94□□□□□ -1.14
USP4-209ENST00000475873 NRXN3Q9Y4C0 1643 aa7.94□□□□□ -1.14
USP4-209ENST00000475873 C1QTNF8P60827 252 aa7.94□□□□□ -1.14
USP4-209ENST00000475873 SF3B2Q13435 895 aaKnown RBP7.94□□□□□ -1.14
USP4-209ENST00000475873 SEPT12Q8IYM1 358 aa7.94□□□□□ -1.14
USP4-209ENST00000475873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP4-209ENST00000475873 ADGRL3Q9HAR2 1447 aa7.94□□□□□ -1.14
USP4-209ENST00000475873 ORAI2Q96SN7 254 aa7.93□□□□□ -1.14
USP4-209ENST00000475873 PPP1R15AO75807 674 aaPredicted RBP7.92□□□□□ -1.14
USP4-209ENST00000475873 BAG6P46379 1132 aa7.92□□□□□ -1.14
USP4-209ENST00000475873 KIF15Q9NS87 1388 aa7.92□□□□□ -1.14
USP4-209ENST00000475873 ERBINQ96RT1 1412 aa7.92□□□□□ -1.14
USP4-209ENST00000475873 TNS1Q9HBL0 1735 aaKnown RBP7.92□□□□□ -1.14
USP4-209ENST00000475873 UNC5CLQ8IV45 518 aa7.91□□□□□ -1.14
USP4-209ENST00000475873 SLC52A1Q9NWF4 448 aa7.91□□□□□ -1.14
USP4-209ENST00000475873 DISP2A7MBM2 1401 aa7.91□□□□□ -1.14
USP4-209ENST00000475873 PXDNQ92626 1479 aa7.9□□□□□ -1.14
USP4-209ENST00000475873 METP08581 1390 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms