RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 FOSBP53539 338 aa13.47□□□□□ -0.25
VAPB-204ENST00000475243 PHLDB1Q86UU1 1377 aa13.47□□□□□ -0.25
VAPB-204ENST00000475243 BECN2A8MW95 431 aa13.47□□□□□ -0.25
VAPB-204ENST00000475243 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
VAPB-204ENST00000475243 TCEAL9Q9UHQ7 104 aa13.47□□□□□ -0.25
VAPB-204ENST00000475243 PDE4AP27815 886 aa13.46□□□□□ -0.25
VAPB-204ENST00000475243 FAM161AQ3B820 660 aa13.46□□□□□ -0.25
VAPB-204ENST00000475243 RAPGEF2Q9Y4G8 1499 aa13.46□□□□□ -0.25
VAPB-204ENST00000475243 E9PSI1 815 aa13.46□□□□□ -0.26
VAPB-204ENST00000475243 VGFO15240 615 aaPredicted RBP13.46□□□□□ -0.26
VAPB-204ENST00000475243 NOL10Q9BSC4 688 aaKnown RBP13.45□□□□□ -0.26
VAPB-204ENST00000475243 DDX11L8A8MPP1 907 aa13.45□□□□□ -0.26
VAPB-204ENST00000475243 RIPK4P57078 832 aa13.45□□□□□ -0.26
VAPB-204ENST00000475243 ANO2Q9NQ90 1003 aa13.45□□□□□ -0.26
VAPB-204ENST00000475243 DHX16O60231 1041 aaKnown RBP13.45□□□□□ -0.26
VAPB-204ENST00000475243 RRP1P56182 461 aaKnown RBP13.45□□□□□ -0.26
VAPB-204ENST00000475243 MEX3CQ5U5Q3 659 aaKnown RBP13.45□□□□□ -0.26
VAPB-204ENST00000475243 ZNF592Q92610 1267 aa13.45□□□□□ -0.26
VAPB-204ENST00000475243 PCMTD1Q96MG8 357 aaPredicted RBP13.45□□□□□ -0.26
VAPB-204ENST00000475243 HMOX1P09601 288 aa13.44□□□□□ -0.26
VAPB-204ENST00000475243 IFIT2P09913 472 aaKnown RBP13.44□□□□□ -0.26
VAPB-204ENST00000475243 CTDP1Q9Y5B0 961 aaPredicted RBP13.44□□□□□ -0.26
VAPB-204ENST00000475243 NUTM2GQ5VZR2 741 aa13.44□□□□□ -0.26
VAPB-204ENST00000475243 KLHL34Q8N239 644 aa13.43□□□□□ -0.26
VAPB-204ENST00000475243 TRIM29Q14134 588 aa13.43□□□□□ -0.26
VAPB-204ENST00000475243 AMOTL1Q8IY63 956 aa13.43□□□□□ -0.26
VAPB-204ENST00000475243 USP47Q96K76 1375 aa13.43□□□□□ -0.26
VAPB-204ENST00000475243 DIAPH1O60610 1272 aaKnown RBP13.42□□□□□ -0.26
VAPB-204ENST00000475243 FKBP5Q13451 457 aaPredicted RBP13.42□□□□□ -0.26
VAPB-204ENST00000475243 AIMP1Q12904 312 aaKnown RBP13.42□□□□□ -0.26
VAPB-204ENST00000475243 TPM2P07951 284 aa13.41□□□□□ -0.26
VAPB-204ENST00000475243 UACAQ9BZF9 1416 aa13.41□□□□□ -0.26
VAPB-204ENST00000475243 NFXL1Q6ZNB6 911 aa13.41□□□□□ -0.26
VAPB-204ENST00000475243 ATP6V1DQ9Y5K8 247 aa13.41□□□□□ -0.26
VAPB-204ENST00000475243 RUFY2Q8WXA3 655 aa13.4□□□□□ -0.26
VAPB-204ENST00000475243 PRKRIP1Q9H875 184 aaPredicted RBP13.4□□□□□ -0.26
VAPB-204ENST00000475243 CPLX1O14810 134 aa13.4□□□□□ -0.26
VAPB-204ENST00000475243 FYB1O15117 783 aa13.4□□□□□ -0.26
VAPB-204ENST00000475243 LRRFIP1Q32MZ4 808 aaKnown RBP13.4□□□□□ -0.26
VAPB-204ENST00000475243 TPM1P09493 284 aa13.4□□□□□ -0.26
VAPB-204ENST00000475243 CPLX2Q6PUV4 134 aaKnown RBP13.4□□□□□ -0.26
VAPB-204ENST00000475243 BCL11BQ9C0K0 894 aaPredicted RBP13.4□□□□□ -0.26
VAPB-204ENST00000475243 ZKSCAN1P17029 563 aaPredicted RBP13.4□□□□□ -0.26
VAPB-204ENST00000475243 KDM4AO75164 1064 aa13.39□□□□□ -0.27
VAPB-204ENST00000475243 G3BP1Q13283 466 aaKnown RBP eCLIP13.39□□□□□ -0.278e-6■■□□□ 11.5
VAPB-204ENST00000475243 TRDNQ13061 729 aa13.39□□□□□ -0.27
VAPB-204ENST00000475243 TSPYL4Q9UJ04 414 aa13.39□□□□□ -0.27
VAPB-204ENST00000475243 PATL2C9JE40 543 aaKnown RBP13.38□□□□□ -0.27
VAPB-204ENST00000475243 DDX58O95786 925 aaKnown RBP13.38□□□□□ -0.27
VAPB-204ENST00000475243 BICD2Q8TD16 824 aa13.38□□□□□ -0.27
VAPB-204ENST00000475243 MTMR7Q9Y216 660 aa13.38□□□□□ -0.27
VAPB-204ENST00000475243 DDX19BQ9UMR2 479 aa13.38□□□□□ -0.27
VAPB-204ENST00000475243 REC8O95072 547 aa13.37□□□□□ -0.27
VAPB-204ENST00000475243 LNPKQ9C0E8 428 aa13.37□□□□□ -0.27
VAPB-204ENST00000475243 DZIP1LQ8IYY4 767 aaKnown RBP13.37□□□□□ -0.27
VAPB-204ENST00000475243 VPS37CA5D8V6 355 aaPredicted RBP13.37□□□□□ -0.27
VAPB-204ENST00000475243 NEUROD6Q96NK8 337 aa13.37□□□□□ -0.27
VAPB-204ENST00000475243 RIC3Q7Z5B4 369 aa13.36□□□□□ -0.27
VAPB-204ENST00000475243 CCDC27Q2M243 656 aa13.36□□□□□ -0.27
VAPB-204ENST00000475243 TOP2AP11388 1531 aaKnown RBP13.36□□□□□ -0.27
VAPB-204ENST00000475243 ERICH2A1L162 156 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 RUSC2Q8N2Y8 1516 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 ZNF428Q96B54 188 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.35□□□□□ -0.27
VAPB-204ENST00000475243 ZBED9Q6R2W3 1325 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 GSE1Q14687 1217 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 USP35Q9P2H5 1018 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 FAM177BA6PVY3 158 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 CNKSR2Q8WXI2 1034 aa13.35□□□□□ -0.27
VAPB-204ENST00000475243 DHX57Q6P158 1386 aaKnown RBP13.34□□□□□ -0.27
VAPB-204ENST00000475243 PTPRGP23470 1445 aa13.34□□□□□ -0.27
VAPB-204ENST00000475243 HSP90AA2PQ14568 343 aaPredicted RBP13.34□□□□□ -0.27
VAPB-204ENST00000475243 SKOR2Q2VWA4 1001 aaPredicted RBP13.34□□□□□ -0.27
VAPB-204ENST00000475243 CHMP4CQ96CF2 233 aa13.34□□□□□ -0.27
VAPB-204ENST00000475243 CABP2Q9NPB3 220 aa13.34□□□□□ -0.27
VAPB-204ENST00000475243 HOMER1Q86YM7 354 aa13.34□□□□□ -0.27
VAPB-204ENST00000475243 GGNBP2Q9H3C7 697 aa13.34□□□□□ -0.27
VAPB-204ENST00000475243 RBM33Q96EV2 1170 aaKnown RBP13.33□□□□□ -0.27
VAPB-204ENST00000475243 ATF3P18847 181 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 RNF20Q5VTR2 975 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 TMEM132EQ6IEE7 984 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
VAPB-204ENST00000475243 CWC22Q9HCG8 908 aaKnown RBP13.33□□□□□ -0.28
VAPB-204ENST00000475243 WASHC4Q2M389 1173 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 RUNDC1Q96C34 613 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 CCDC70Q6NSX1 233 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 RAPGEF4Q8WZA2 1011 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 SMC3Q9UQE7 1217 aa13.33□□□□□ -0.28
VAPB-204ENST00000475243 PANK1Q8TE04 598 aa13.32□□□□□ -0.28
VAPB-204ENST00000475243 CCDC43Q96MW1 224 aaKnown RBP13.32□□□□□ -0.28
VAPB-204ENST00000475243 API5Q9BZZ5 524 aaKnown RBP13.32□□□□□ -0.28
VAPB-204ENST00000475243 IPO7O95373 1038 aaKnown RBP13.31□□□□□ -0.28
VAPB-204ENST00000475243 FAM69CQ0P6D2 419 aa13.31□□□□□ -0.28
VAPB-204ENST00000475243 CCDC47Q96A33 483 aaKnown RBP13.31□□□□□ -0.28
VAPB-204ENST00000475243 NLRP2Q9NX02 1062 aa13.31□□□□□ -0.28
VAPB-204ENST00000475243 AEBP2Q6ZN18 517 aaPredicted RBP13.31□□□□□ -0.28
VAPB-204ENST00000475243 ANKRD20A12PQ8NF67 263 aa13.31□□□□□ -0.28
VAPB-204ENST00000475243 NAP1L1P55209 391 aaKnown RBP13.31□□□□□ -0.28
VAPB-204ENST00000475243 ZNF644Q9H582 1327 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms