RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 SYNMO15061 1565 aa16.85■□□□□ 0.29
SYNE1-222ENST00000474655 SCAF11Q99590 1463 aaKnown RBP16.85■□□□□ 0.29
SYNE1-222ENST00000474655 KTN1Q86UP2 1357 aaKnown RBP16.82■□□□□ 0.28
SYNE1-222ENST00000474655 SETBP1Q9Y6X0 1596 aa16.82■□□□□ 0.28
SYNE1-222ENST00000474655 PREX1Q8TCU6 1659 aa16.81■□□□□ 0.28
SYNE1-222ENST00000474655 DISP3Q9P2K9 1392 aa16.81■□□□□ 0.28
SYNE1-222ENST00000474655 RPGRIP1LQ68CZ1 1315 aa16.81■□□□□ 0.28
SYNE1-222ENST00000474655 CCDC184Q52MB2 194 aa16.8■□□□□ 0.28
SYNE1-222ENST00000474655 ADGRF5Q8IZF2 1346 aa16.8■□□□□ 0.28
SYNE1-222ENST00000474655 TMF1P82094 1093 aa16.79■□□□□ 0.28
SYNE1-222ENST00000474655 POLR3GLQ9BT43 218 aa16.79■□□□□ 0.28
SYNE1-222ENST00000474655 PPP6R1Q9UPN7 881 aa16.79■□□□□ 0.28
SYNE1-222ENST00000474655 MYO3AQ8NEV4 1616 aa16.79■□□□□ 0.28
SYNE1-222ENST00000474655 PIK3C2GO75747 1445 aa16.78■□□□□ 0.28
SYNE1-222ENST00000474655 EIF3AQ14152 1382 aaKnown RBP16.77■□□□□ 0.28
SYNE1-222ENST00000474655 ARHGEF40Q8TER5 1519 aa16.77■□□□□ 0.27
SYNE1-222ENST00000474655 PER1O15534 1290 aaPredicted RBP16.76■□□□□ 0.27
SYNE1-222ENST00000474655 NEXMIFQ5QGS0 1516 aa16.76■□□□□ 0.27
SYNE1-222ENST00000474655 MRS2Q9HD23 443 aa16.75■□□□□ 0.27
SYNE1-222ENST00000474655 SLC52A1Q9NWF4 448 aa16.75■□□□□ 0.27
SYNE1-222ENST00000474655 SLC24A1O60721 1099 aa16.74■□□□□ 0.27
SYNE1-222ENST00000474655 CFAP70Q5T0N1 1121 aa16.74■□□□□ 0.27
SYNE1-222ENST00000474655 RALBP1Q15311 655 aa16.74■□□□□ 0.27
SYNE1-222ENST00000474655 TMEM131LA2VDJ0 1609 aa16.73■□□□□ 0.27
SYNE1-222ENST00000474655 MYO5BQ9ULV0 1848 aa16.73■□□□□ 0.27
SYNE1-222ENST00000474655 ADGRB1O14514 1584 aa16.73■□□□□ 0.27
SYNE1-222ENST00000474655 ZFYVE9O95405 1425 aa16.73■□□□□ 0.27
SYNE1-222ENST00000474655 SBNO2Q9Y2G9 1366 aa16.73■□□□□ 0.27
SYNE1-222ENST00000474655 C14orf93Q9H972 538 aaKnown RBP16.72■□□□□ 0.27
SYNE1-222ENST00000474655 CDCA8Q53HL2 280 aa16.72■□□□□ 0.27
SYNE1-222ENST00000474655 MYOM1P52179 1685 aa16.71■□□□□ 0.27
SYNE1-222ENST00000474655 PARD3Q8TEW0 1356 aa16.71■□□□□ 0.27
SYNE1-222ENST00000474655 KDM5AP29375 1690 aaKnown RBP16.71■□□□□ 0.27
SYNE1-222ENST00000474655 CLTCQ00610 1675 aaKnown RBP16.71■□□□□ 0.27
SYNE1-222ENST00000474655 ERVK-7P63135 1459 aa16.7■□□□□ 0.26
SYNE1-222ENST00000474655 CHGAP10645 457 aaKnown RBP16.7■□□□□ 0.26
SYNE1-222ENST00000474655 IDI1Q13907 227 aa16.7■□□□□ 0.26
SYNE1-222ENST00000474655 HNRNPUQ00839 825 aaKnown RBP eCLIP16.69■□□□□ 0.26
SYNE1-222ENST00000474655 BRD4O60885 1362 aaPredicted RBP16.69■□□□□ 0.26
SYNE1-222ENST00000474655 MYBBP1AQ9BQG0 1328 aaKnown RBP16.69■□□□□ 0.26
SYNE1-222ENST00000474655 VGFO15240 615 aaPredicted RBP16.68■□□□□ 0.26
SYNE1-222ENST00000474655 SPATA31D1Q6ZQQ2 1576 aa16.68■□□□□ 0.26
SYNE1-222ENST00000474655 PANK3Q9H999 370 aa16.66■□□□□ 0.26
SYNE1-222ENST00000474655 FAM9BQ8IZU0 186 aa16.66■□□□□ 0.26
SYNE1-222ENST00000474655 QRICH2Q9H0J4 1663 aa16.64■□□□□ 0.25
SYNE1-222ENST00000474655 PNISRQ8TF01 805 aaKnown RBP16.64■□□□□ 0.25
SYNE1-222ENST00000474655 ZBED9Q6R2W3 1325 aa16.64■□□□□ 0.25
SYNE1-222ENST00000474655 ARHGEF28Q8N1W1 1705 aaKnown RBP16.63■□□□□ 0.25
SYNE1-222ENST00000474655 LRPPRCP42704 1394 aaKnown RBP16.63■□□□□ 0.25
SYNE1-222ENST00000474655 FBXO31Q5XUX0 539 aaPredicted RBP16.62■□□□□ 0.25
SYNE1-222ENST00000474655 NLRP13Q86W25 1043 aa16.61■□□□□ 0.25
SYNE1-222ENST00000474655 TMC1Q8TDI8 760 aa16.61■□□□□ 0.25
SYNE1-222ENST00000474655 NPC1L1Q9UHC9 1359 aa16.61■□□□□ 0.25
SYNE1-222ENST00000474655 CENPJQ9HC77 1338 aaPredicted RBP16.61■□□□□ 0.25
SYNE1-222ENST00000474655 SUPT16HQ9Y5B9 1047 aaKnown RBP16.6■□□□□ 0.25
SYNE1-222ENST00000474655 ASXL1Q8IXJ9 1541 aa16.59■□□□□ 0.25
SYNE1-222ENST00000474655 CNGB1Q14028 1251 aaPredicted RBP16.57■□□□□ 0.24
SYNE1-222ENST00000474655 AMER1Q5JTC6 1135 aaPredicted RBP16.57■□□□□ 0.24
SYNE1-222ENST00000474655 A2ML1A8K2U0 1454 aa16.57■□□□□ 0.24
SYNE1-222ENST00000474655 INSRP06213 1382 aa16.57■□□□□ 0.24
SYNE1-222ENST00000474655 PUS7Q96PZ0 661 aaKnown RBP16.56■□□□□ 0.24
SYNE1-222ENST00000474655 TMEM132EQ6IEE7 984 aa16.56■□□□□ 0.24
SYNE1-222ENST00000474655 TRAK1Q9UPV9 953 aa16.56■□□□□ 0.24
SYNE1-222ENST00000474655 KNSTRNQ9Y448 316 aa16.56■□□□□ 0.24
SYNE1-222ENST00000474655 ZMYM3Q14202 1370 aa16.55■□□□□ 0.24
SYNE1-222ENST00000474655 CC2D1BQ5T0F9 858 aaKnown RBP16.54■□□□□ 0.24
SYNE1-222ENST00000474655 ALKQ9UM73 1620 aa16.54■□□□□ 0.24
SYNE1-222ENST00000474655 NUTM2DQ5VT03 806 aaPredicted RBP16.53■□□□□ 0.24
SYNE1-222ENST00000474655 SETD1AO15047 1707 aaKnown RBP16.53■□□□□ 0.24
SYNE1-222ENST00000474655 MLECQ14165 292 aa16.51■□□□□ 0.23
SYNE1-222ENST00000474655 TULP4Q9NRJ4 1543 aa16.51■□□□□ 0.23
SYNE1-222ENST00000474655 PTPRMP28827 1452 aa16.5■□□□□ 0.23
SYNE1-222ENST00000474655 USP32Q8NFA0 1604 aa16.5■□□□□ 0.23
SYNE1-222ENST00000474655 YTHDC2Q9H6S0 1430 aaKnown RBP16.49■□□□□ 0.23
SYNE1-222ENST00000474655 RIMS2Q9UQ26 1411 aa16.49■□□□□ 0.23
SYNE1-222ENST00000474655 CARD14Q9BXL6 1004 aa16.48■□□□□ 0.23
SYNE1-222ENST00000474655 ESF1Q9H501 851 aaKnown RBP16.48■□□□□ 0.23
SYNE1-222ENST00000474655 STAG3Q9UJ98 1225 aa16.48■□□□□ 0.23
SYNE1-222ENST00000474655 SMG6Q86US8 1419 aaKnown RBP16.47■□□□□ 0.23
SYNE1-222ENST00000474655 PPP2R1AP30153 589 aa16.47■□□□□ 0.23
SYNE1-222ENST00000474655 NRXN3Q9Y4C0 1643 aa16.47■□□□□ 0.23
SYNE1-222ENST00000474655 DLC1Q96QB1 1528 aa16.47■□□□□ 0.23
SYNE1-222ENST00000474655 EVC2Q86UK5 1308 aa16.46■□□□□ 0.23
SYNE1-222ENST00000474655 UBR1Q8IWV7 1749 aa16.46■□□□□ 0.23
SYNE1-222ENST00000474655 NEFLP07196 543 aa16.46■□□□□ 0.23
SYNE1-222ENST00000474655 FKBP8Q14318 412 aa16.46■□□□□ 0.23
SYNE1-222ENST00000474655 BLMP54132 1417 aaPredicted RBP16.46■□□□□ 0.23
SYNE1-222ENST00000474655 TNRQ92752 1358 aa16.45■□□□□ 0.22
SYNE1-222ENST00000474655 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.43■□□□□ 0.22
SYNE1-222ENST00000474655 NINLQ9Y2I6 1382 aa16.43■□□□□ 0.22
SYNE1-222ENST00000474655 SLC12A5Q9H2X9 1139 aa16.41■□□□□ 0.22
SYNE1-222ENST00000474655 C3P01024 1663 aa16.41■□□□□ 0.22
SYNE1-222ENST00000474655 NUDCQ9Y266 331 aa16.41■□□□□ 0.22
SYNE1-222ENST00000474655 KNDC1Q76NI1 1749 aa16.41■□□□□ 0.22
SYNE1-222ENST00000474655 ANKRD36BQ8N2N9 1353 aa16.41■□□□□ 0.22
SYNE1-222ENST00000474655 NLRP1Q9C000 1473 aa16.4■□□□□ 0.22
SYNE1-222ENST00000474655 NSD3Q9BZ95 1437 aa16.4■□□□□ 0.22
SYNE1-222ENST00000474655 ABCC11Q96J66 1382 aa16.4■□□□□ 0.22
SYNE1-222ENST00000474655 FER1L4A9Z1Z3 1794 aa16.39■□□□□ 0.21
SYNE1-222ENST00000474655 ERICH6BQ5W0A0 696 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms