RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 AGLP35573 1532 aa13.49□□□□□ -0.25
USP39-214ENST00000474572 PREX1Q8TCU6 1659 aa13.48□□□□□ -0.25
USP39-214ENST00000474572 RAPGEF3O95398 923 aa13.48□□□□□ -0.25
USP39-214ENST00000474572 MRS2Q9HD23 443 aa13.47□□□□□ -0.25
USP39-214ENST00000474572 PARD3Q8TEW0 1356 aa13.46□□□□□ -0.25
USP39-214ENST00000474572 SUPT16HQ9Y5B9 1047 aaKnown RBP13.46□□□□□ -0.25
USP39-214ENST00000474572 KDM5AP29375 1690 aaKnown RBP13.46□□□□□ -0.26
USP39-214ENST00000474572 TSPOAP1O95153 1857 aa13.46□□□□□ -0.26
USP39-214ENST00000474572 PIK3C2GO75747 1445 aa13.46□□□□□ -0.26
USP39-214ENST00000474572 WASHC2CQ9Y4E1 1318 aa13.45□□□□□ -0.26
USP39-214ENST00000474572 NEXMIFQ5QGS0 1516 aa13.45□□□□□ -0.26
USP39-214ENST00000474572 PER1O15534 1290 aaPredicted RBP13.45□□□□□ -0.26
USP39-214ENST00000474572 TMF1P82094 1093 aa13.45□□□□□ -0.26
USP39-214ENST00000474572 ADGRB1O14514 1584 aa13.45□□□□□ -0.26
USP39-214ENST00000474572 EIF3AQ14152 1382 aaKnown RBP13.45□□□□□ -0.26
USP39-214ENST00000474572 SBNO2Q9Y2G9 1366 aa13.45□□□□□ -0.26
USP39-214ENST00000474572 HNRNPUQ00839 825 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP39-214ENST00000474572 RALBP1Q15311 655 aa13.44□□□□□ -0.26
USP39-214ENST00000474572 CFAP65Q6ZU64 1925 aaKnown RBP13.44□□□□□ -0.26
USP39-214ENST00000474572 BRD4O60885 1362 aaPredicted RBP13.44□□□□□ -0.26
USP39-214ENST00000474572 RPGRIP1LQ68CZ1 1315 aa13.43□□□□□ -0.26
USP39-214ENST00000474572 GGT6Q6P531 493 aa13.43□□□□□ -0.26
USP39-214ENST00000474572 POLR3GLQ9BT43 218 aa13.43□□□□□ -0.26
USP39-214ENST00000474572 ARHGEF40Q8TER5 1519 aa13.43□□□□□ -0.26
USP39-214ENST00000474572 LRPPRCP42704 1394 aaKnown RBP13.43□□□□□ -0.26
USP39-214ENST00000474572 ZBED9Q6R2W3 1325 aa13.42□□□□□ -0.26
USP39-214ENST00000474572 ADGRF5Q8IZF2 1346 aa13.42□□□□□ -0.26
USP39-214ENST00000474572 MYBBP1AQ9BQG0 1328 aaKnown RBP13.41□□□□□ -0.26
USP39-214ENST00000474572 FAM69CQ0P6D2 419 aa13.41□□□□□ -0.26
USP39-214ENST00000474572 TMEM131LA2VDJ0 1609 aa13.41□□□□□ -0.26
USP39-214ENST00000474572 ZFYVE9O95405 1425 aa13.4□□□□□ -0.26
USP39-214ENST00000474572 SLC24A1O60721 1099 aa13.4□□□□□ -0.26
USP39-214ENST00000474572 MYO5BQ9ULV0 1848 aa13.4□□□□□ -0.26
USP39-214ENST00000474572 ERVK-7P63135 1459 aa13.4□□□□□ -0.26
USP39-214ENST00000474572 INSRP06213 1382 aa13.39□□□□□ -0.27
USP39-214ENST00000474572 QRICH2Q9H0J4 1663 aa13.39□□□□□ -0.27
USP39-214ENST00000474572 ARHGEF28Q8N1W1 1705 aaKnown RBP13.39□□□□□ -0.27
USP39-214ENST00000474572 CDCA8Q53HL2 280 aa13.38□□□□□ -0.27
USP39-214ENST00000474572 PNISRQ8TF01 805 aaKnown RBP13.38□□□□□ -0.27
USP39-214ENST00000474572 CFAP70Q5T0N1 1121 aa13.37□□□□□ -0.27
USP39-214ENST00000474572 FAM9BQ8IZU0 186 aa13.37□□□□□ -0.27
USP39-214ENST00000474572 PPP6R1Q9UPN7 881 aa13.37□□□□□ -0.27
USP39-214ENST00000474572 CLTCQ00610 1675 aaKnown RBP13.37□□□□□ -0.27
USP39-214ENST00000474572 SPATA31D1Q6ZQQ2 1576 aa13.37□□□□□ -0.27
USP39-214ENST00000474572 NPC1L1Q9UHC9 1359 aa13.36□□□□□ -0.27
USP39-214ENST00000474572 C14orf93Q9H972 538 aaKnown RBP13.36□□□□□ -0.27
USP39-214ENST00000474572 ASXL1Q8IXJ9 1541 aa13.35□□□□□ -0.27
USP39-214ENST00000474572 SLC52A1Q9NWF4 448 aa13.35□□□□□ -0.27
USP39-214ENST00000474572 NLRP13Q86W25 1043 aa13.34□□□□□ -0.27
USP39-214ENST00000474572 PANK3Q9H999 370 aa13.34□□□□□ -0.27
USP39-214ENST00000474572 USP32Q8NFA0 1604 aa13.32□□□□□ -0.28
USP39-214ENST00000474572 SMG6Q86US8 1419 aaKnown RBP13.32□□□□□ -0.28
USP39-214ENST00000474572 TMC1Q8TDI8 760 aa13.32□□□□□ -0.28
USP39-214ENST00000474572 BLMP54132 1417 aaPredicted RBP13.3□□□□□ -0.28
USP39-214ENST00000474572 IDI1Q13907 227 aa13.3□□□□□ -0.28
USP39-214ENST00000474572 FKBP8Q14318 412 aa13.3□□□□□ -0.28
USP39-214ENST00000474572 SETD1AO15047 1707 aaKnown RBP13.3□□□□□ -0.28
USP39-214ENST00000474572 VGFO15240 615 aaPredicted RBP13.29□□□□□ -0.28
USP39-214ENST00000474572 NEFLP07196 543 aa13.29□□□□□ -0.28
USP39-214ENST00000474572 CHGAP10645 457 aaKnown RBP13.29□□□□□ -0.28
USP39-214ENST00000474572 AMER1Q5JTC6 1135 aaPredicted RBP13.29□□□□□ -0.28
USP39-214ENST00000474572 CENPJQ9HC77 1338 aaPredicted RBP13.29□□□□□ -0.28
USP39-214ENST00000474572 PUS7Q96PZ0 661 aaKnown RBP13.28□□□□□ -0.28
USP39-214ENST00000474572 TULP4Q9NRJ4 1543 aa13.28□□□□□ -0.28
USP39-214ENST00000474572 ERICH6BQ5W0A0 696 aa13.27□□□□□ -0.29
USP39-214ENST00000474572 ALKQ9UM73 1620 aa13.25□□□□□ -0.29
USP39-214ENST00000474572 A2ML1A8K2U0 1454 aa13.25□□□□□ -0.29
USP39-214ENST00000474572 PELP1Q8IZL8 1130 aaKnown RBP13.25□□□□□ -0.29
USP39-214ENST00000474572 PTPRMP28827 1452 aa13.24□□□□□ -0.29
USP39-214ENST00000474572 CC2D1BQ5T0F9 858 aaKnown RBP13.24□□□□□ -0.29
USP39-214ENST00000474572 NUDCQ9Y266 331 aa13.24□□□□□ -0.29
USP39-214ENST00000474572 KNSTRNQ9Y448 316 aa13.24□□□□□ -0.29
USP39-214ENST00000474572 DLC1Q96QB1 1528 aa13.23□□□□□ -0.29
USP39-214ENST00000474572 RNF123Q5XPI4 1314 aa13.23□□□□□ -0.29
USP39-214ENST00000474572 CNGB1Q14028 1251 aaPredicted RBP13.23□□□□□ -0.29
USP39-214ENST00000474572 NRXN3Q9Y4C0 1643 aa13.22□□□□□ -0.29
USP39-214ENST00000474572 PPP2R1AP30153 589 aa13.22□□□□□ -0.29
USP39-214ENST00000474572 FBXO31Q5XUX0 539 aaPredicted RBP13.21□□□□□ -0.29
USP39-214ENST00000474572 TRAK1Q9UPV9 953 aa13.21□□□□□ -0.29
USP39-214ENST00000474572 KNDC1Q76NI1 1749 aa13.21□□□□□ -0.3
USP39-214ENST00000474572 TMEM132EQ6IEE7 984 aa13.2□□□□□ -0.3
USP39-214ENST00000474572 YTHDC2Q9H6S0 1430 aaKnown RBP13.19□□□□□ -0.3
USP39-214ENST00000474572 ANKRD26Q9UPS8 1709 aa13.19□□□□□ -0.3
USP39-214ENST00000474572 NINLQ9Y2I6 1382 aa13.19□□□□□ -0.3
USP39-214ENST00000474572 PDE3BQ13370 1112 aa13.18□□□□□ -0.3
USP39-214ENST00000474572 CARD14Q9BXL6 1004 aa13.18□□□□□ -0.3
USP39-214ENST00000474572 RIMS2Q9UQ26 1411 aa13.18□□□□□ -0.3
USP39-214ENST00000474572 UBR1Q8IWV7 1749 aa13.18□□□□□ -0.3
USP39-214ENST00000474572 SHPRHQ149N8 1683 aa13.18□□□□□ -0.3
USP39-214ENST00000474572 NSD3Q9BZ95 1437 aa13.17□□□□□ -0.3
USP39-214ENST00000474572 BCANQ96GW7 911 aa13.16□□□□□ -0.3
USP39-214ENST00000474572 ZMYM3Q14202 1370 aa13.16□□□□□ -0.3
USP39-214ENST00000474572 ANKRD36BQ8N2N9 1353 aa13.16□□□□□ -0.3
USP39-214ENST00000474572 EVC2Q86UK5 1308 aa13.15□□□□□ -0.3
USP39-214ENST00000474572 POLR3AO14802 1390 aaPredicted RBP13.15□□□□□ -0.3
USP39-214ENST00000474572 NSD2O96028 1365 aa13.15□□□□□ -0.3
USP39-214ENST00000474572 NUTM2DQ5VT03 806 aaPredicted RBP13.13□□□□□ -0.31
USP39-214ENST00000474572 CPS1P31327 1500 aa13.13□□□□□ -0.31
USP39-214ENST00000474572 MED14O60244 1454 aa13.12□□□□□ -0.31
USP39-214ENST00000474572 ATAD2Q6PL18 1390 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms