RNA–Protein interactions for RNA: ENST00000473257.1

ACTB-209, Transcript of actin beta, humanhuman

TSL 3

Gene ACTB, Length 556 nt, Biotype processed transcript, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-209ENST00000473257 KDM5AP29375 1690 aaKnown RBP17.37■□□□□ 0.37
ACTB-209ENST00000473257 CHGAP10645 457 aaKnown RBP17.37■□□□□ 0.37
ACTB-209ENST00000473257 ITGAEP38570 1179 aa17.36■□□□□ 0.37
ACTB-209ENST00000473257 SLC52A1Q9NWF4 448 aa17.36■□□□□ 0.37
ACTB-209ENST00000473257 ZFYVE9O95405 1425 aa17.35■□□□□ 0.37
ACTB-209ENST00000473257 FAM135BQ49AJ0 1406 aa17.35■□□□□ 0.37
ACTB-209ENST00000473257 RIMS2Q9UQ26 1411 aa17.35■□□□□ 0.37
ACTB-209ENST00000473257 PPP1R15AO75807 674 aaPredicted RBP17.34■□□□□ 0.37
ACTB-209ENST00000473257 GCC2Q8IWJ2 1684 aa17.34■□□□□ 0.37
ACTB-209ENST00000473257 ROBO1Q9Y6N7 1651 aa17.34■□□□□ 0.37
ACTB-209ENST00000473257 TMEM131LA2VDJ0 1609 aa17.32■□□□□ 0.36
ACTB-209ENST00000473257 NWD1Q149M9 1564 aa17.32■□□□□ 0.36
ACTB-209ENST00000473257 RPRD2Q5VT52 1461 aaKnown RBP17.31■□□□□ 0.36
ACTB-209ENST00000473257 PLEKHG1Q9ULL1 1385 aa17.3■□□□□ 0.36
ACTB-209ENST00000473257 POTEAQ6S8J7 498 aa17.3■□□□□ 0.36
ACTB-209ENST00000473257 E9PCH4 1651 aa17.29■□□□□ 0.36
ACTB-209ENST00000473257 UNC13BO14795 1591 aa17.29■□□□□ 0.36
ACTB-209ENST00000473257 NKTRP30414 1462 aaKnown RBP17.29■□□□□ 0.36
ACTB-209ENST00000473257 MSH6P52701 1360 aa17.28■□□□□ 0.36
ACTB-209ENST00000473257 SLAIN2Q9P270 581 aa17.28■□□□□ 0.36
ACTB-209ENST00000473257 CHD2O14647 1828 aaKnown RBP17.26■□□□□ 0.35
ACTB-209ENST00000473257 ADAMTS13Q76LX8 1427 aa17.26■□□□□ 0.35
ACTB-209ENST00000473257 C14orf37Q86TY3 774 aa17.25■□□□□ 0.35
ACTB-209ENST00000473257 NUP155O75694 1391 aa17.25■□□□□ 0.35
ACTB-209ENST00000473257 TBX22Q9Y458 520 aa17.24■□□□□ 0.35
ACTB-209ENST00000473257 PHLPP1O60346 1717 aa17.24■□□□□ 0.35
ACTB-209ENST00000473257 IQGAP3Q86VI3 1631 aa17.23■□□□□ 0.35
ACTB-209ENST00000473257 ROCK1Q13464 1354 aa17.23■□□□□ 0.35
ACTB-209ENST00000473257 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.21■□□□□ 0.353e-11■■■■□ 24.1
ACTB-209ENST00000473257 PTPRUQ92729 1446 aa17.21■□□□□ 0.34
ACTB-209ENST00000473257 HDGFP51858 240 aaKnown RBP17.2■□□□□ 0.34
ACTB-209ENST00000473257 AMOTL2Q9Y2J4 779 aa17.18■□□□□ 0.34
ACTB-209ENST00000473257 COL16A1Q07092 1604 aaPredicted RBP17.18■□□□□ 0.34
ACTB-209ENST00000473257 JCADQ9P266 1359 aa17.17■□□□□ 0.34
ACTB-209ENST00000473257 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.17■□□□□ 0.34
ACTB-209ENST00000473257 LRP6O75581 1613 aa17.17■□□□□ 0.34
ACTB-209ENST00000473257 SETD1AO15047 1707 aaKnown RBP17.16■□□□□ 0.34
ACTB-209ENST00000473257 ATF3P18847 181 aa17.15■□□□□ 0.34
ACTB-209ENST00000473257 ZNF326Q5BKZ1 582 aaKnown RBP17.15■□□□□ 0.34
ACTB-209ENST00000473257 C19orf44Q9H6X5 657 aa17.14■□□□□ 0.33
ACTB-209ENST00000473257 DIP2AQ14689 1571 aa17.14■□□□□ 0.33
ACTB-209ENST00000473257 NRXN3Q9Y4C0 1643 aa17.14■□□□□ 0.33
ACTB-209ENST00000473257 TRPM2O94759 1503 aa17.13■□□□□ 0.33
ACTB-209ENST00000473257 METP08581 1390 aa17.13■□□□□ 0.33
ACTB-209ENST00000473257 BRINP3Q76B58 766 aa17.12■□□□□ 0.33
ACTB-209ENST00000473257 CADPS2Q86UW7 1296 aa17.12■□□□□ 0.33
ACTB-209ENST00000473257 SPHKAPQ2M3C7 1700 aa17.11■□□□□ 0.33
ACTB-209ENST00000473257 NUTM2BA6NNL0 878 aaPredicted RBP17.11■□□□□ 0.33
ACTB-209ENST00000473257 NUTM2EB1AL46 878 aaPredicted RBP17.11■□□□□ 0.33
ACTB-209ENST00000473257 MEX3CQ5U5Q3 659 aaKnown RBP17.11■□□□□ 0.33
ACTB-209ENST00000473257 NUTM2AQ8IVF1 878 aaPredicted RBP17.11■□□□□ 0.33
ACTB-209ENST00000473257 DDX17Q92841 729 aaKnown RBP17.11■□□□□ 0.33
ACTB-209ENST00000473257 PIK3R4Q99570 1358 aa17.11■□□□□ 0.33
ACTB-209ENST00000473257 NCOA3Q9Y6Q9 1424 aa17.11■□□□□ 0.33
ACTB-209ENST00000473257 CLTCL1P53675 1640 aa17.09■□□□□ 0.33
ACTB-209ENST00000473257 XRN1Q8IZH2 1706 aaKnown RBP17.08■□□□□ 0.32
ACTB-209ENST00000473257 AHDC1Q5TGY3 1603 aaPredicted RBP17.08■□□□□ 0.32
ACTB-209ENST00000473257 SETBP1Q9Y6X0 1596 aa17.07■□□□□ 0.32
ACTB-209ENST00000473257 TRIM52Q96A61 297 aa17.07■□□□□ 0.32
ACTB-209ENST00000473257 MST1RQ04912 1400 aa17.05■□□□□ 0.32
ACTB-209ENST00000473257 SPATA31A6Q5VVP1 1343 aa17.05■□□□□ 0.32
ACTB-209ENST00000473257 NEXMIFQ5QGS0 1516 aa17.05■□□□□ 0.32
ACTB-209ENST00000473257 ASXL1Q8IXJ9 1541 aa17.05■□□□□ 0.32
ACTB-209ENST00000473257 NAIPQ13075 1403 aa17.04■□□□□ 0.32
ACTB-209ENST00000473257 SHPRHQ149N8 1683 aa17.04■□□□□ 0.32
ACTB-209ENST00000473257 RRBP1Q9P2E9 1410 aaKnown RBP17.01■□□□□ 0.31
ACTB-209ENST00000473257 NALCNQ8IZF0 1738 aa17.01■□□□□ 0.31
ACTB-209ENST00000473257 DCCP43146 1447 aa17■□□□□ 0.31
ACTB-209ENST00000473257 FOXD1Q16676 465 aa17■□□□□ 0.31
ACTB-209ENST00000473257 ADGRL3Q9HAR2 1447 aa16.99■□□□□ 0.31
ACTB-209ENST00000473257 AFF2P51816 1311 aa16.98■□□□□ 0.31
ACTB-209ENST00000473257 ZNF772Q68DY9 489 aaPredicted RBP16.98■□□□□ 0.31
ACTB-209ENST00000473257 ROBO2Q9HCK4 1378 aa16.98■□□□□ 0.31
ACTB-209ENST00000473257 NHSL1Q5SYE7 1610 aa16.97■□□□□ 0.31
ACTB-209ENST00000473257 SETD5Q9C0A6 1442 aa16.96■□□□□ 0.31
ACTB-209ENST00000473257 KIF1BO60333 1816 aa16.96■□□□□ 0.31
ACTB-209ENST00000473257 UPF1Q92900 1129 aaKnown RBP eCLIP16.96■□□□□ 0.31
ACTB-209ENST00000473257 C8orf37Q96NL8 207 aa16.96■□□□□ 0.31
ACTB-209ENST00000473257 ORAI2Q96SN7 254 aa16.96■□□□□ 0.31
ACTB-209ENST00000473257 PNPLA6Q8IY17 1366 aa16.95■□□□□ 0.3
ACTB-209ENST00000473257 RXRBP28702 533 aa16.95■□□□□ 0.3
ACTB-209ENST00000473257 SLC4A1APQ9BWU0 796 aaKnown RBP16.95■□□□□ 0.3
ACTB-209ENST00000473257 C1orf167Q5SNV9 1468 aa16.94■□□□□ 0.3
ACTB-209ENST00000473257 ADAMTS2O95450 1211 aa16.94■□□□□ 0.3
ACTB-209ENST00000473257 LRRC59Q96AG4 307 aaKnown RBP16.93■□□□□ 0.3
ACTB-209ENST00000473257 HFM1A2PYH4 1435 aa16.92■□□□□ 0.3
ACTB-209ENST00000473257 VGFO15240 615 aaPredicted RBP16.91■□□□□ 0.3
ACTB-209ENST00000473257 PTCH1Q13635 1447 aa16.89■□□□□ 0.29
ACTB-209ENST00000473257 RGL3Q3MIN7 710 aa16.89■□□□□ 0.29
ACTB-209ENST00000473257 QTRT2Q9H974 415 aaKnown RBP16.89■□□□□ 0.29
ACTB-209ENST00000473257 STK26Q9P289 416 aa16.89■□□□□ 0.29
ACTB-209ENST00000473257 ADGRF5Q8IZF2 1346 aa16.89■□□□□ 0.29
ACTB-209ENST00000473257 RGS12O14924 1447 aa16.88■□□□□ 0.29
ACTB-209ENST00000473257 NUTM2FA1L443 756 aa16.88■□□□□ 0.29
ACTB-209ENST00000473257 XPCQ01831 940 aaPredicted RBP16.88■□□□□ 0.29
ACTB-209ENST00000473257 PPLO60437 1756 aa16.87■□□□□ 0.29
ACTB-209ENST00000473257 NGLY1Q96IV0 654 aa16.87■□□□□ 0.29
ACTB-209ENST00000473257 SRCAPQ6ZRS2 3230 aa16.87■□□□□ 0.29
ACTB-209ENST00000473257 WAPLQ7Z5K2 1190 aa16.86■□□□□ 0.29
ACTB-209ENST00000473257 TMEM132EQ6IEE7 984 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms