RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ROCK2O75116 1388 aaKnown RBP18.07■□□□□ 0.48
VPS13D-205ENST00000473099 IQGAP1P46940 1657 aa18.07■□□□□ 0.48
VPS13D-205ENST00000473099 DIEXFQ68CQ4 756 aaKnown RBP18.07■□□□□ 0.48
VPS13D-205ENST00000473099 IDI1Q13907 227 aa18.06■□□□□ 0.48
VPS13D-205ENST00000473099 USP47Q96K76 1375 aa18.05■□□□□ 0.48
VPS13D-205ENST00000473099 CHGAP10645 457 aaKnown RBP18.05■□□□□ 0.48
VPS13D-205ENST00000473099 HSPA5P11021 654 aaKnown RBP18.05■□□□□ 0.48
VPS13D-205ENST00000473099 RIMS1Q86UR5 1692 aaKnown RBP18.05■□□□□ 0.48
VPS13D-205ENST00000473099 ZFYVE9O95405 1425 aa18.05■□□□□ 0.48
VPS13D-205ENST00000473099 SETBP1Q9Y6X0 1596 aa18.04■□□□□ 0.48
VPS13D-205ENST00000473099 FBXO31Q5XUX0 539 aaPredicted RBP18.04■□□□□ 0.48
VPS13D-205ENST00000473099 CARD11Q9BXL7 1154 aa18.04■□□□□ 0.48
VPS13D-205ENST00000473099 SETD1BQ9UPS6 1966 aaKnown RBP18.04■□□□□ 0.48
VPS13D-205ENST00000473099 UBR1Q8IWV7 1749 aa18.03■□□□□ 0.48
VPS13D-205ENST00000473099 TNRQ92752 1358 aa18.03■□□□□ 0.48
VPS13D-205ENST00000473099 NLRP1Q9C000 1473 aa18.02■□□□□ 0.48
VPS13D-205ENST00000473099 PIK3C2GO75747 1445 aa18■□□□□ 0.47
VPS13D-205ENST00000473099 VGFO15240 615 aaPredicted RBP18■□□□□ 0.47
VPS13D-205ENST00000473099 STAG3Q9UJ98 1225 aa17.98■□□□□ 0.47
VPS13D-205ENST00000473099 A2ML1A8K2U0 1454 aa17.98■□□□□ 0.47
VPS13D-205ENST00000473099 SCAF11Q99590 1463 aaKnown RBP17.96■□□□□ 0.47
VPS13D-205ENST00000473099 MYO3AQ8NEV4 1616 aa17.96■□□□□ 0.47
VPS13D-205ENST00000473099 ADGRF5Q8IZF2 1346 aa17.96■□□□□ 0.46
VPS13D-205ENST00000473099 EIF3AQ14152 1382 aaKnown RBP17.94■□□□□ 0.46
VPS13D-205ENST00000473099 NBPF1Q3BBV0 1214 aa17.94■□□□□ 0.46
VPS13D-205ENST00000473099 HIRIP3Q9BW71 556 aaPredicted RBP17.94■□□□□ 0.46
VPS13D-205ENST00000473099 HDGFP51858 240 aaKnown RBP17.93■□□□□ 0.46
VPS13D-205ENST00000473099 ZNF142P52746 1687 aaPredicted RBP17.93■□□□□ 0.46
VPS13D-205ENST00000473099 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.92■□□□□ 0.46
VPS13D-205ENST00000473099 RIMS2Q9UQ26 1411 aa17.91■□□□□ 0.46
VPS13D-205ENST00000473099 SLC24A1O60721 1099 aa17.91■□□□□ 0.46
VPS13D-205ENST00000473099 C14orf93Q9H972 538 aaKnown RBP17.91■□□□□ 0.46
VPS13D-205ENST00000473099 CCDC7Q96M83 1385 aa17.91■□□□□ 0.46
VPS13D-205ENST00000473099 ADGRB1O14514 1584 aa17.9■□□□□ 0.46
VPS13D-205ENST00000473099 SETD1AO15047 1707 aaKnown RBP17.89■□□□□ 0.46
VPS13D-205ENST00000473099 LMTK3Q96Q04 1460 aa17.89■□□□□ 0.45
VPS13D-205ENST00000473099 ARHGEF28Q8N1W1 1705 aaKnown RBP17.89■□□□□ 0.45
VPS13D-205ENST00000473099 ST20-MTHFSA0A0A6YYL1 179 aa17.88■□□□□ 0.45
VPS13D-205ENST00000473099 CFAP70Q5T0N1 1121 aa17.88■□□□□ 0.45
VPS13D-205ENST00000473099 WASHC2AQ641Q2 1341 aa17.88■□□□□ 0.45
VPS13D-205ENST00000473099 CEP170BQ9Y4F5 1589 aaPredicted RBP17.87■□□□□ 0.45
VPS13D-205ENST00000473099 ALKQ9UM73 1620 aa17.87■□□□□ 0.45
VPS13D-205ENST00000473099 QRICH2Q9H0J4 1663 aa17.87■□□□□ 0.45
VPS13D-205ENST00000473099 DDX10Q13206 875 aaKnown RBP17.86■□□□□ 0.45
VPS13D-205ENST00000473099 PLPPR3Q6T4P5 718 aa17.86■□□□□ 0.45
VPS13D-205ENST00000473099 SLIT1O75093 1534 aa17.86■□□□□ 0.45
VPS13D-205ENST00000473099 CEBPAP49715 358 aaPredicted RBP17.85■□□□□ 0.45
VPS13D-205ENST00000473099 TMEM2Q9UHN6 1383 aa17.85■□□□□ 0.45
VPS13D-205ENST00000473099 NRXN3Q9Y4C0 1643 aa17.84■□□□□ 0.45
VPS13D-205ENST00000473099 KIF7Q2M1P5 1343 aa17.84■□□□□ 0.45
VPS13D-205ENST00000473099 ILDR1Q86SU0 546 aaPredicted RBP17.84■□□□□ 0.45
VPS13D-205ENST00000473099 ARHGAP23Q9P227 1491 aa17.83■□□□□ 0.45
VPS13D-205ENST00000473099 SBNO2Q9Y2G9 1366 aa17.83■□□□□ 0.45
VPS13D-205ENST00000473099 KNDC1Q76NI1 1749 aa17.83■□□□□ 0.44
VPS13D-205ENST00000473099 ASXL1Q8IXJ9 1541 aa17.82■□□□□ 0.44
VPS13D-205ENST00000473099 TMF1P82094 1093 aa17.81■□□□□ 0.44
VPS13D-205ENST00000473099 C11orf95C9JLR9 678 aaPredicted RBP17.8■□□□□ 0.44
VPS13D-205ENST00000473099 CDCA8Q53HL2 280 aa17.8■□□□□ 0.44
VPS13D-205ENST00000473099 THEMISQ8N1K5 641 aaPredicted RBP17.8■□□□□ 0.44
VPS13D-205ENST00000473099 TESK2Q96S53 571 aa17.8■□□□□ 0.44
VPS13D-205ENST00000473099 NUTM2DQ5VT03 806 aaPredicted RBP17.79■□□□□ 0.44
VPS13D-205ENST00000473099 DIP2AQ14689 1571 aa17.79■□□□□ 0.44
VPS13D-205ENST00000473099 EID1Q9Y6B2 187 aa17.78■□□□□ 0.44
VPS13D-205ENST00000473099 PLEKHG1Q9ULL1 1385 aa17.78■□□□□ 0.44
VPS13D-205ENST00000473099 DLC1Q96QB1 1528 aa17.77■□□□□ 0.44
VPS13D-205ENST00000473099 CENPJQ9HC77 1338 aaPredicted RBP17.76■□□□□ 0.43
VPS13D-205ENST00000473099 YTHDC2Q9H6S0 1430 aaKnown RBP17.76■□□□□ 0.43
VPS13D-205ENST00000473099 MYOM1P52179 1685 aa17.74■□□□□ 0.43
VPS13D-205ENST00000473099 ANP32CO43423 234 aa17.73■□□□□ 0.43
VPS13D-205ENST00000473099 HSPA2P54652 639 aa17.73■□□□□ 0.43
VPS13D-205ENST00000473099 TMEM132EQ6IEE7 984 aa17.73■□□□□ 0.43
VPS13D-205ENST00000473099 MIER1Q8N108 512 aa17.73■□□□□ 0.43
VPS13D-205ENST00000473099 DISP3Q9P2K9 1392 aa17.73■□□□□ 0.43
VPS13D-205ENST00000473099 LRPPRCP42704 1394 aaKnown RBP17.72■□□□□ 0.43
VPS13D-205ENST00000473099 TRAK1Q9UPV9 953 aa17.72■□□□□ 0.43
VPS13D-205ENST00000473099 TXNDC2Q86VQ3 553 aa17.71■□□□□ 0.43
VPS13D-205ENST00000473099 CPS1P31327 1500 aa17.71■□□□□ 0.43
VPS13D-205ENST00000473099 ABCC11Q96J66 1382 aa17.7■□□□□ 0.42
VPS13D-205ENST00000473099 POLR3GLQ9BT43 218 aa17.7■□□□□ 0.42
VPS13D-205ENST00000473099 MED14O60244 1454 aa17.69■□□□□ 0.42
VPS13D-205ENST00000473099 TECPR2O15040 1411 aa17.69■□□□□ 0.42
VPS13D-205ENST00000473099 ADAMTS13Q76LX8 1427 aa17.69■□□□□ 0.42
VPS13D-205ENST00000473099 PUS7Q96PZ0 661 aaKnown RBP17.68■□□□□ 0.42
VPS13D-205ENST00000473099 LTKP29376 864 aa17.67■□□□□ 0.42
VPS13D-205ENST00000473099 FBXO41Q8TF61 875 aa17.66■□□□□ 0.42
VPS13D-205ENST00000473099 SIRT1Q96EB6 747 aa17.66■□□□□ 0.42
VPS13D-205ENST00000473099 BCANQ96GW7 911 aa17.66■□□□□ 0.42
VPS13D-205ENST00000473099 CHD2O14647 1828 aaKnown RBP17.65■□□□□ 0.42
VPS13D-205ENST00000473099 FAM135BQ49AJ0 1406 aa17.65■□□□□ 0.42
VPS13D-205ENST00000473099 TBX22Q9Y458 520 aa17.64■□□□□ 0.41
VPS13D-205ENST00000473099 EVC2Q86UK5 1308 aa17.64■□□□□ 0.41
VPS13D-205ENST00000473099 TULP4Q9NRJ4 1543 aa17.63■□□□□ 0.41
VPS13D-205ENST00000473099 CCER2I3L3R5 266 aa17.63■□□□□ 0.41
VPS13D-205ENST00000473099 ANKLE2Q86XL3 938 aa17.63■□□□□ 0.41
VPS13D-205ENST00000473099 POGKQ9P215 609 aa17.63■□□□□ 0.41
VPS13D-205ENST00000473099 STK26Q9P289 416 aa17.63■□□□□ 0.41
VPS13D-205ENST00000473099 XRN1Q8IZH2 1706 aaKnown RBP17.63■□□□□ 0.41
VPS13D-205ENST00000473099 METP08581 1390 aa17.63■□□□□ 0.41
VPS13D-205ENST00000473099 KTN1Q86UP2 1357 aaKnown RBP17.63■□□□□ 0.41
VPS13D-205ENST00000473099 PIK3R4Q99570 1358 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms