RNA–Protein interactions for RNA: ENST00000472892.1

VTI1A-203, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 1 (best)

Gene VTI1A, Length 1,247 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-203ENST00000472892 IQGAP3Q86VI3 1631 aa23.31■■□□□ 1.32
VTI1A-203ENST00000472892 KCNA6P17658 529 aa23.31■■□□□ 1.32
VTI1A-203ENST00000472892 HDGFP51858 240 aaKnown RBP23.3■■□□□ 1.32
VTI1A-203ENST00000472892 ILDR2Q71H61 639 aa23.3■■□□□ 1.32
VTI1A-203ENST00000472892 ZFYVE9O95405 1425 aa23.3■■□□□ 1.32
VTI1A-203ENST00000472892 RRBP1Q9P2E9 1410 aaKnown RBP23.3■■□□□ 1.32
VTI1A-203ENST00000472892 E9PCH4 1651 aa23.29■■□□□ 1.32
VTI1A-203ENST00000472892 TMEM131LA2VDJ0 1609 aa23.27■■□□□ 1.32
VTI1A-203ENST00000472892 RIMS2Q9UQ26 1411 aa23.26■■□□□ 1.31
VTI1A-203ENST00000472892 BCANQ96GW7 911 aa23.26■■□□□ 1.31
VTI1A-203ENST00000472892 PLEKHG1Q9ULL1 1385 aa23.26■■□□□ 1.31
VTI1A-203ENST00000472892 CHGAP10645 457 aaKnown RBP23.24■■□□□ 1.31
VTI1A-203ENST00000472892 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.24■■□□□ 1.31
VTI1A-203ENST00000472892 PPP1R15AO75807 674 aaPredicted RBP23.23■■□□□ 1.31
VTI1A-203ENST00000472892 TMEM94Q12767 1356 aa23.23■■□□□ 1.31
VTI1A-203ENST00000472892 PROSER2Q86WR7 435 aaPredicted RBP23.22■■□□□ 1.31
VTI1A-203ENST00000472892 XIRP1Q702N8 1843 aaKnown RBP23.22■■□□□ 1.31
VTI1A-203ENST00000472892 MYO5BQ9ULV0 1848 aa23.22■■□□□ 1.31
VTI1A-203ENST00000472892 TBX22Q9Y458 520 aa23.21■■□□□ 1.31
VTI1A-203ENST00000472892 NAIPQ13075 1403 aa23.18■■□□□ 1.3
VTI1A-203ENST00000472892 NUTM2DQ5VT03 806 aaPredicted RBP23.17■■□□□ 1.3
VTI1A-203ENST00000472892 RBM33Q96EV2 1170 aaKnown RBP23.17■■□□□ 1.3
VTI1A-203ENST00000472892 NWD1Q149M9 1564 aa23.17■■□□□ 1.3
VTI1A-203ENST00000472892 NKTRP30414 1462 aaKnown RBP23.17■■□□□ 1.3
VTI1A-203ENST00000472892 SOCS7O14512 581 aa23.14■■□□□ 1.29
VTI1A-203ENST00000472892 FAM135BQ49AJ0 1406 aa23.14■■□□□ 1.29
VTI1A-203ENST00000472892 ADAMTS13Q76LX8 1427 aa23.14■■□□□ 1.29
VTI1A-203ENST00000472892 CHD2O14647 1828 aaKnown RBP23.11■■□□□ 1.29
VTI1A-203ENST00000472892 HFM1A2PYH4 1435 aa23.1■■□□□ 1.29
VTI1A-203ENST00000472892 MED1Q15648 1581 aaPredicted RBP23.1■■□□□ 1.29
VTI1A-203ENST00000472892 PIK3R4Q99570 1358 aa23.09■■□□□ 1.29
VTI1A-203ENST00000472892 SPHKAPQ2M3C7 1700 aa23.08■■□□□ 1.29
VTI1A-203ENST00000472892 MSH6P52701 1360 aa23.08■■□□□ 1.29
VTI1A-203ENST00000472892 NCOA3Q9Y6Q9 1424 aa23.07■■□□□ 1.28
VTI1A-203ENST00000472892 DIP2AQ14689 1571 aa23.06■■□□□ 1.28
VTI1A-203ENST00000472892 ZNF326Q5BKZ1 582 aaKnown RBP23.05■■□□□ 1.28
VTI1A-203ENST00000472892 TRIM52Q96A61 297 aa23.05■■□□□ 1.28
VTI1A-203ENST00000472892 SLAIN2Q9P270 581 aa23.05■■□□□ 1.28
VTI1A-203ENST00000472892 AMOTL2Q9Y2J4 779 aa23.03■■□□□ 1.28
VTI1A-203ENST00000472892 TRPM2O94759 1503 aa23.03■■□□□ 1.28
VTI1A-203ENST00000472892 CLTCL1P53675 1640 aa23■■□□□ 1.27
VTI1A-203ENST00000472892 PTPRUQ92729 1446 aa23■■□□□ 1.27
VTI1A-203ENST00000472892 SLC4A1APQ9BWU0 796 aaKnown RBP23■■□□□ 1.27
VTI1A-203ENST00000472892 ROBO1Q9Y6N7 1651 aa23■■□□□ 1.27
VTI1A-203ENST00000472892 C19orf44Q9H6X5 657 aa22.99■■□□□ 1.27
VTI1A-203ENST00000472892 SETBP1Q9Y6X0 1596 aa22.98■■□□□ 1.27
VTI1A-203ENST00000472892 C14orf37Q86TY3 774 aa22.98■■□□□ 1.27
VTI1A-203ENST00000472892 NRXN3Q9Y4C0 1643 aa22.97■■□□□ 1.27
VTI1A-203ENST00000472892 NEXMIFQ5QGS0 1516 aa22.95■■□□□ 1.26
VTI1A-203ENST00000472892 CADPS2Q86UW7 1296 aa22.95■■□□□ 1.26
VTI1A-203ENST00000472892 METP08581 1390 aa22.94■■□□□ 1.26
VTI1A-203ENST00000472892 ATF3P18847 181 aa22.93■■□□□ 1.26
VTI1A-203ENST00000472892 VGFO15240 615 aaPredicted RBP22.92■■□□□ 1.26
VTI1A-203ENST00000472892 KIF1BO60333 1816 aa22.92■■□□□ 1.26
VTI1A-203ENST00000472892 RPGRIP1LQ68CZ1 1315 aa22.91■■□□□ 1.26
VTI1A-203ENST00000472892 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.9■■□□□ 1.26
VTI1A-203ENST00000472892 XRN1Q8IZH2 1706 aaKnown RBP22.89■■□□□ 1.26
VTI1A-203ENST00000472892 RGS17Q9UGC6 210 aaPredicted RBP22.89■■□□□ 1.25
VTI1A-203ENST00000472892 MPHOSPH9Q99550 1183 aa22.87■■□□□ 1.25
VTI1A-203ENST00000472892 DCCP43146 1447 aa22.85■■□□□ 1.25
VTI1A-203ENST00000472892 PHLPP1O60346 1717 aa22.84■■□□□ 1.25
VTI1A-203ENST00000472892 JCADQ9P266 1359 aa22.84■■□□□ 1.25
VTI1A-203ENST00000472892 ACIN1Q9UKV3 1341 aaKnown RBP22.82■■□□□ 1.24
VTI1A-203ENST00000472892 BRINP3Q76B58 766 aa22.82■■□□□ 1.24
VTI1A-203ENST00000472892 COL16A1Q07092 1604 aaPredicted RBP22.8■■□□□ 1.24
VTI1A-203ENST00000472892 CCDC144AA2RUR9 1427 aa22.79■■□□□ 1.24
VTI1A-203ENST00000472892 AHDC1Q5TGY3 1603 aaPredicted RBP22.79■■□□□ 1.24
VTI1A-203ENST00000472892 MST1RQ04912 1400 aa22.78■■□□□ 1.24
VTI1A-203ENST00000472892 ADGRL3Q9HAR2 1447 aa22.78■■□□□ 1.24
VTI1A-203ENST00000472892 SETD5Q9C0A6 1442 aa22.77■■□□□ 1.24
VTI1A-203ENST00000472892 PPLO60437 1756 aa22.76■■□□□ 1.23
VTI1A-203ENST00000472892 SPATA31E1Q6ZUB1 1445 aa22.76■■□□□ 1.23
VTI1A-203ENST00000472892 SETD1AO15047 1707 aaKnown RBP22.76■■□□□ 1.23
VTI1A-203ENST00000472892 ROBO2Q9HCK4 1378 aa22.76■■□□□ 1.23
VTI1A-203ENST00000472892 PTCH1Q13635 1447 aa22.75■■□□□ 1.23
VTI1A-203ENST00000472892 RGL3Q3MIN7 710 aa22.75■■□□□ 1.23
VTI1A-203ENST00000472892 SPATA31A6Q5VVP1 1343 aa22.75■■□□□ 1.23
VTI1A-203ENST00000472892 PRAG1Q86YV5 1406 aa22.74■■□□□ 1.23
VTI1A-203ENST00000472892 POTEAQ6S8J7 498 aa22.74■■□□□ 1.23
VTI1A-203ENST00000472892 ADGRF5Q8IZF2 1346 aa22.74■■□□□ 1.23
VTI1A-203ENST00000472892 ASXL1Q8IXJ9 1541 aa22.72■■□□□ 1.23
VTI1A-203ENST00000472892 ANKRD30BQ9BXX2 1392 aa22.72■■□□□ 1.23
VTI1A-203ENST00000472892 NALCNQ8IZF0 1738 aa22.69■■□□□ 1.22
VTI1A-203ENST00000472892 RAB3GAP2Q9H2M9 1393 aa22.67■■□□□ 1.22
VTI1A-203ENST00000472892 LRRC59Q96AG4 307 aaKnown RBP22.67■■□□□ 1.22
VTI1A-203ENST00000472892 LRP6O75581 1613 aa22.67■■□□□ 1.22
VTI1A-203ENST00000472892 C1orf167Q5SNV9 1468 aa22.66■■□□□ 1.22
VTI1A-203ENST00000472892 SHPRHQ149N8 1683 aa22.66■■□□□ 1.22
VTI1A-203ENST00000472892 DDX17Q92841 729 aaKnown RBP22.65■■□□□ 1.22
VTI1A-203ENST00000472892 NHSL1Q5SYE7 1610 aa22.64■■□□□ 1.22
VTI1A-203ENST00000472892 MEX3CQ5U5Q3 659 aaKnown RBP22.63■■□□□ 1.21
VTI1A-203ENST00000472892 PIK3C2GO75747 1445 aa22.63■■□□□ 1.21
VTI1A-203ENST00000472892 IFT172Q9UG01 1749 aa22.62■■□□□ 1.21
VTI1A-203ENST00000472892 ORAI2Q96SN7 254 aa22.62■■□□□ 1.21
VTI1A-203ENST00000472892 LRPPRCP42704 1394 aaKnown RBP22.62■■□□□ 1.21
VTI1A-203ENST00000472892 ABCC11Q96J66 1382 aa22.62■■□□□ 1.21
VTI1A-203ENST00000472892 TECPR2O15040 1411 aa22.61■■□□□ 1.21
VTI1A-203ENST00000472892 TMEM132EQ6IEE7 984 aa22.61■■□□□ 1.21
VTI1A-203ENST00000472892 STK26Q9P289 416 aa22.61■■□□□ 1.21
VTI1A-203ENST00000472892 NUTM2BA6NNL0 878 aaPredicted RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms