RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 POTECB2RU33 542 aa14.16□□□□□ -0.14
SCN9A-206ENST00000472119 NPDC1Q9NQX5 325 aaPredicted RBP14.16□□□□□ -0.14
SCN9A-206ENST00000472119 ZNF598Q86UK7 904 aaKnown RBP14.15□□□□□ -0.14
SCN9A-206ENST00000472119 EYA1Q99502 592 aa14.14□□□□□ -0.15
SCN9A-206ENST00000472119 PPEF1O14829 653 aaPredicted RBP14.13□□□□□ -0.15
SCN9A-206ENST00000472119 FAM187AA6NFU0 413 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 PRR20EP86478 221 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 PRR20CP86479 221 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 PRR20DP86480 221 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 PRR20BP86481 221 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 PRR20AP86496 221 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 ZNF697Q5TEC3 545 aa14.12□□□□□ -0.15
SCN9A-206ENST00000472119 ANKLE1Q8NAG6 615 aa14.11□□□□□ -0.15
SCN9A-206ENST00000472119 TNFRSF10AO00220 468 aa14.1□□□□□ -0.15
SCN9A-206ENST00000472119 S1PR4O95977 384 aa14.1□□□□□ -0.15
SCN9A-206ENST00000472119 SPRYD3Q8NCJ5 442 aa14.09□□□□□ -0.15
SCN9A-206ENST00000472119 LIAT1Q6ZQX7 453 aa14.08□□□□□ -0.16
SCN9A-206ENST00000472119 KMT5BQ4FZB7 885 aa14.04□□□□□ -0.16
SCN9A-206ENST00000472119 GDF9O60383 454 aa14.03□□□□□ -0.16
SCN9A-206ENST00000472119 DNAJB2P25686 324 aa14.03□□□□□ -0.16
SCN9A-206ENST00000472119 ST8SIA5O15466 376 aa14.02□□□□□ -0.17
SCN9A-206ENST00000472119 ACTN4O43707 911 aaKnown RBP14.01□□□□□ -0.17
SCN9A-206ENST00000472119 ADH1BP00325 375 aa13.99□□□□□ -0.17
SCN9A-206ENST00000472119 CFHP08603 1231 aa13.99□□□□□ -0.17
SCN9A-206ENST00000472119 TREML4Q6UXN2 200 aa13.99□□□□□ -0.17
SCN9A-206ENST00000472119 RBM46Q8TBY0 533 aaKnown RBP13.98□□□□□ -0.17
SCN9A-206ENST00000472119 TMEM134Q9H6X4 195 aa13.98□□□□□ -0.17
SCN9A-206ENST00000472119 AAASQ9NRG9 546 aa13.98□□□□□ -0.17
SCN9A-206ENST00000472119 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
SCN9A-206ENST00000472119 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.97□□□□□ -0.17
SCN9A-206ENST00000472119 PLA2G2CQ5R387 149 aa13.95□□□□□ -0.18
SCN9A-206ENST00000472119 SLC6A16Q9GZN6 736 aa13.95□□□□□ -0.18
SCN9A-206ENST00000472119 NR1I2O75469 434 aa13.94□□□□□ -0.18
SCN9A-206ENST00000472119 FOXC1Q12948 553 aa13.94□□□□□ -0.18
SCN9A-206ENST00000472119 RCCD1A6NED2 376 aa13.92□□□□□ -0.18
SCN9A-206ENST00000472119 CFAP44Q96MT7 982 aa13.92□□□□□ -0.18
SCN9A-206ENST00000472119 ADGRG1Q9Y653 693 aa13.92□□□□□ -0.18
SCN9A-206ENST00000472119 LCE2AQ5TA79 106 aaPredicted RBP13.91□□□□□ -0.18
SCN9A-206ENST00000472119 MLLT3P42568 568 aaPredicted RBP13.9□□□□□ -0.18
SCN9A-206ENST00000472119 PTGDRQ13258 359 aa13.9□□□□□ -0.18
SCN9A-206ENST00000472119 FAM161AQ3B820 660 aa13.9□□□□□ -0.18
SCN9A-206ENST00000472119 SLC10A3P09131 477 aa13.88□□□□□ -0.19
SCN9A-206ENST00000472119 PAXIP1Q6ZW49 1069 aaPredicted RBP13.88□□□□□ -0.19
SCN9A-206ENST00000472119 PKD2L1Q9P0L9 805 aa13.87□□□□□ -0.19
SCN9A-206ENST00000472119 SCUBE3Q8IX30 993 aa13.85□□□□□ -0.19
SCN9A-206ENST00000472119 DACH1Q9UI36 760 aa13.85□□□□□ -0.19
SCN9A-206ENST00000472119 PUS10Q3MIT2 529 aaKnown RBP13.83□□□□□ -0.2
SCN9A-206ENST00000472119 LMOD2Q6P5Q4 547 aa13.83□□□□□ -0.2
SCN9A-206ENST00000472119 WFS1O76024 890 aa13.82□□□□□ -0.2
SCN9A-206ENST00000472119 SPSB2Q99619 263 aa13.82□□□□□ -0.2
SCN9A-206ENST00000472119 NUTM2FA1L443 756 aa13.81□□□□□ -0.2
SCN9A-206ENST00000472119 CRIPAKQ8N1N5 446 aa13.81□□□□□ -0.2
SCN9A-206ENST00000472119 GMPR2Q9P2T1 348 aaKnown RBP13.81□□□□□ -0.2
SCN9A-206ENST00000472119 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.79□□□□□ -0.2
SCN9A-206ENST00000472119 C11orf95C9JLR9 678 aaPredicted RBP13.79□□□□□ -0.2
SCN9A-206ENST00000472119 AXIN1O15169 862 aa13.79□□□□□ -0.2
SCN9A-206ENST00000472119 CYP4X1Q8N118 509 aa13.78□□□□□ -0.2
SCN9A-206ENST00000472119 AVPP01185 164 aa13.76□□□□□ -0.21
SCN9A-206ENST00000472119 RPIAP49247 311 aa13.76□□□□□ -0.21
SCN9A-206ENST00000472119 TOR4AQ9NXH8 423 aa13.76□□□□□ -0.21
SCN9A-206ENST00000472119 FCF1Q9Y324 198 aaKnown RBP13.75□□□□□ -0.21
SCN9A-206ENST00000472119 ARHGEF1Q92888 912 aaKnown RBP13.74□□□□□ -0.21
SCN9A-206ENST00000472119 CD2BP2O95400 341 aaKnown RBP13.73□□□□□ -0.21
SCN9A-206ENST00000472119 RSPH4AQ5TD94 716 aa13.73□□□□□ -0.21
SCN9A-206ENST00000472119 CTC1Q2NKJ3 1217 aa13.72□□□□□ -0.21
SCN9A-206ENST00000472119 ABCC9O60706 1549 aa13.71□□□□□ -0.21
SCN9A-206ENST00000472119 STK17AQ9UEE5 414 aa13.71□□□□□ -0.21
SCN9A-206ENST00000472119 FCHSD2O94868 740 aa13.7□□□□□ -0.22
SCN9A-206ENST00000472119 NFX1Q12986 1120 aaKnown RBP13.7□□□□□ -0.22
SCN9A-206ENST00000472119 PXYLP1Q8TE99 480 aa13.7□□□□□ -0.22
SCN9A-206ENST00000472119 OATP04181 439 aa13.68□□□□□ -0.22
SCN9A-206ENST00000472119 TTC24A2A3L6 582 aaPredicted RBP13.67□□□□□ -0.22
SCN9A-206ENST00000472119 INSM1Q01101 510 aaPredicted RBP13.67□□□□□ -0.22
SCN9A-206ENST00000472119 KCNV2Q8TDN2 545 aa13.67□□□□□ -0.22
SCN9A-206ENST00000472119 SMCPP49901 116 aaPredicted RBP13.65□□□□□ -0.22
SCN9A-206ENST00000472119 RDH13Q8NBN7 331 aa13.65□□□□□ -0.22
SCN9A-206ENST00000472119 WIPF1O43516 503 aa13.64□□□□□ -0.23
SCN9A-206ENST00000472119 MORN1Q5T089 497 aa13.64□□□□□ -0.23
SCN9A-206ENST00000472119 ZBTB24O43167 697 aaPredicted RBP13.62□□□□□ -0.23
SCN9A-206ENST00000472119 FMNL1O95466 1100 aaPredicted RBP13.62□□□□□ -0.23
SCN9A-206ENST00000472119 FUT2Q10981 343 aa13.62□□□□□ -0.23
SCN9A-206ENST00000472119 FAM160A2Q8N612 972 aaPredicted RBP13.62□□□□□ -0.23
SCN9A-206ENST00000472119 THAP11Q96EK4 314 aa13.62□□□□□ -0.23
SCN9A-206ENST00000472119 PRDM9Q9NQV7 894 aa13.62□□□□□ -0.23
SCN9A-206ENST00000472119 METTL3Q86U44 580 aaKnown RBP13.61□□□□□ -0.23
SCN9A-206ENST00000472119 SNRPBP14678 240 aaKnown RBP13.58□□□□□ -0.24
SCN9A-206ENST00000472119 ATP6V1AP38606 617 aa13.58□□□□□ -0.24
SCN9A-206ENST00000472119 ATP13A2Q9NQ11 1180 aa13.58□□□□□ -0.24
SCN9A-206ENST00000472119 SLC27A5Q9Y2P5 690 aa13.58□□□□□ -0.24
SCN9A-206ENST00000472119 DDX11L8A8MPP1 907 aa13.57□□□□□ -0.24
SCN9A-206ENST00000472119 TERTO14746 1132 aaKnown RBP13.55□□□□□ -0.24
SCN9A-206ENST00000472119 SMPD1P17405 629 aa13.55□□□□□ -0.24
SCN9A-206ENST00000472119 LCE2CQ5TA81 110 aa13.54□□□□□ -0.24
SCN9A-206ENST00000472119 SNIP1Q8TAD8 396 aaKnown RBP13.54□□□□□ -0.24
SCN9A-206ENST00000472119 DAXXQ9UER7 740 aaPredicted RBP13.54□□□□□ -0.24
SCN9A-206ENST00000472119 WNT7AO00755 349 aa13.53□□□□□ -0.24
SCN9A-206ENST00000472119 HIC1Q14526 733 aa13.52□□□□□ -0.25
SCN9A-206ENST00000472119 SENP2Q9HC62 589 aa13.52□□□□□ -0.25
SCN9A-206ENST00000472119 FECHP22830 423 aa13.51□□□□□ -0.25
SCN9A-206ENST00000472119 TRIM47Q96LD4 638 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms