RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 TMEM94Q12767 1356 aa20.28■□□□□ 0.84
CPSF4-210ENST00000469897 TET3O43151 1660 aa20.25■□□□□ 0.83
CPSF4-210ENST00000469897 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.24■□□□□ 0.83
CPSF4-210ENST00000469897 RIMS2Q9UQ26 1411 aa20.24■□□□□ 0.83
CPSF4-210ENST00000469897 ADGRB3O60242 1522 aa20.23■□□□□ 0.83
CPSF4-210ENST00000469897 PHF23Q9BUL5 403 aaPredicted RBP20.22■□□□□ 0.83
CPSF4-210ENST00000469897 TBX22Q9Y458 520 aa20.22■□□□□ 0.83
CPSF4-210ENST00000469897 PLEKHG1Q9ULL1 1385 aa20.21■□□□□ 0.83
CPSF4-210ENST00000469897 ZFYVE9O95405 1425 aa20.21■□□□□ 0.83
CPSF4-210ENST00000469897 KDM5AP29375 1690 aaKnown RBP20.19■□□□□ 0.82
CPSF4-210ENST00000469897 FAM135BQ49AJ0 1406 aa20.18■□□□□ 0.82
CPSF4-210ENST00000469897 SLAIN2Q9P270 581 aa20.17■□□□□ 0.82
CPSF4-210ENST00000469897 UNC13BO14795 1591 aa20.17■□□□□ 0.82
CPSF4-210ENST00000469897 MED1Q15648 1581 aaPredicted RBP20.17■□□□□ 0.82
CPSF4-210ENST00000469897 TMEM131LA2VDJ0 1609 aa20.13■□□□□ 0.81
CPSF4-210ENST00000469897 MSH6P52701 1360 aa20.13■□□□□ 0.81
CPSF4-210ENST00000469897 ZNF326Q5BKZ1 582 aaKnown RBP20.13■□□□□ 0.81
CPSF4-210ENST00000469897 C14orf37Q86TY3 774 aa20.13■□□□□ 0.81
CPSF4-210ENST00000469897 AMOTL2Q9Y2J4 779 aa20.11■□□□□ 0.81
CPSF4-210ENST00000469897 ADAMTS13Q76LX8 1427 aa20.1■□□□□ 0.81
CPSF4-210ENST00000469897 E9PCH4 1651 aa20.1■□□□□ 0.81
CPSF4-210ENST00000469897 NKTRP30414 1462 aaKnown RBP20.1■□□□□ 0.81
CPSF4-210ENST00000469897 IQGAP3Q86VI3 1631 aa20.09■□□□□ 0.81
CPSF4-210ENST00000469897 TRIM52Q96A61 297 aa20.09■□□□□ 0.81
CPSF4-210ENST00000469897 RGS17Q9UGC6 210 aaPredicted RBP20.09■□□□□ 0.81
CPSF4-210ENST00000469897 XIRP1Q702N8 1843 aaKnown RBP20.09■□□□□ 0.81
CPSF4-210ENST00000469897 GCC2Q8IWJ2 1684 aa20.08■□□□□ 0.81
CPSF4-210ENST00000469897 RRBP1Q9P2E9 1410 aaKnown RBP20.08■□□□□ 0.8
CPSF4-210ENST00000469897 C19orf44Q9H6X5 657 aa20.07■□□□□ 0.8
CPSF4-210ENST00000469897 NWD1Q149M9 1564 aa20.05■□□□□ 0.8
CPSF4-210ENST00000469897 NAIPQ13075 1403 aa20.05■□□□□ 0.8
CPSF4-210ENST00000469897 PIK3R4Q99570 1358 aa20.05■□□□□ 0.8
CPSF4-210ENST00000469897 ATF3P18847 181 aa20.04■□□□□ 0.8
CPSF4-210ENST00000469897 NCOA3Q9Y6Q9 1424 aa20.03■□□□□ 0.8
CPSF4-210ENST00000469897 CADPS2Q86UW7 1296 aa20.03■□□□□ 0.8
CPSF4-210ENST00000469897 PTPRUQ92729 1446 aa20.02■□□□□ 0.8
CPSF4-210ENST00000469897 MYO5BQ9ULV0 1848 aa20■□□□□ 0.79
CPSF4-210ENST00000469897 SLC4A1APQ9BWU0 796 aaKnown RBP20■□□□□ 0.79
CPSF4-210ENST00000469897 METP08581 1390 aa19.98■□□□□ 0.79
CPSF4-210ENST00000469897 ROBO1Q9Y6N7 1651 aa19.98■□□□□ 0.79
CPSF4-210ENST00000469897 POTEAQ6S8J7 498 aa19.98■□□□□ 0.79
CPSF4-210ENST00000469897 CHD2O14647 1828 aaKnown RBP19.97■□□□□ 0.79
CPSF4-210ENST00000469897 FOXD1Q16676 465 aa19.95■□□□□ 0.78
CPSF4-210ENST00000469897 JCADQ9P266 1359 aa19.95■□□□□ 0.78
CPSF4-210ENST00000469897 HFM1A2PYH4 1435 aa19.94■□□□□ 0.78
CPSF4-210ENST00000469897 TRPM2O94759 1503 aa19.94■□□□□ 0.78
CPSF4-210ENST00000469897 VGFO15240 615 aaPredicted RBP19.94■□□□□ 0.78
CPSF4-210ENST00000469897 BRINP3Q76B58 766 aa19.94■□□□□ 0.78
CPSF4-210ENST00000469897 DIP2AQ14689 1571 aa19.94■□□□□ 0.78
CPSF4-210ENST00000469897 RPGRIP1LQ68CZ1 1315 aa19.89■□□□□ 0.77
CPSF4-210ENST00000469897 CLTCL1P53675 1640 aa19.88■□□□□ 0.77
CPSF4-210ENST00000469897 SETBP1Q9Y6X0 1596 aa19.88■□□□□ 0.77
CPSF4-210ENST00000469897 SPHKAPQ2M3C7 1700 aa19.88■□□□□ 0.77
CPSF4-210ENST00000469897 MPHOSPH9Q99550 1183 aa19.87■□□□□ 0.77
CPSF4-210ENST00000469897 SPATA31A6Q5VVP1 1343 aa19.86■□□□□ 0.77
CPSF4-210ENST00000469897 RGL3Q3MIN7 710 aa19.86■□□□□ 0.77
CPSF4-210ENST00000469897 MEX3CQ5U5Q3 659 aaKnown RBP19.86■□□□□ 0.77
CPSF4-210ENST00000469897 DDX17Q92841 729 aaKnown RBP19.86■□□□□ 0.77
CPSF4-210ENST00000469897 NRXN3Q9Y4C0 1643 aa19.86■□□□□ 0.77
CPSF4-210ENST00000469897 NEXMIFQ5QGS0 1516 aa19.86■□□□□ 0.77
CPSF4-210ENST00000469897 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.85■□□□□ 0.77
CPSF4-210ENST00000469897 NUTM2BA6NNL0 878 aaPredicted RBP19.85■□□□□ 0.77
CPSF4-210ENST00000469897 NUTM2EB1AL46 878 aaPredicted RBP19.85■□□□□ 0.77
CPSF4-210ENST00000469897 NUTM2AQ8IVF1 878 aaPredicted RBP19.85■□□□□ 0.77
CPSF4-210ENST00000469897 PHLPP1O60346 1717 aa19.84■□□□□ 0.77
CPSF4-210ENST00000469897 DCCP43146 1447 aa19.83■□□□□ 0.76
CPSF4-210ENST00000469897 LRRC59Q96AG4 307 aaKnown RBP19.82■□□□□ 0.76
CPSF4-210ENST00000469897 MST1RQ04912 1400 aa19.82■□□□□ 0.76
CPSF4-210ENST00000469897 ROBO2Q9HCK4 1378 aa19.8■□□□□ 0.76
CPSF4-210ENST00000469897 COL16A1Q07092 1604 aaPredicted RBP19.8■□□□□ 0.76
CPSF4-210ENST00000469897 ADGRF5Q8IZF2 1346 aa19.79■□□□□ 0.76
CPSF4-210ENST00000469897 ADGRL3Q9HAR2 1447 aa19.79■□□□□ 0.76
CPSF4-210ENST00000469897 ZNF772Q68DY9 489 aaPredicted RBP19.79■□□□□ 0.76
CPSF4-210ENST00000469897 ORAI2Q96SN7 254 aa19.79■□□□□ 0.76
CPSF4-210ENST00000469897 XRN1Q8IZH2 1706 aaKnown RBP19.79■□□□□ 0.76
CPSF4-210ENST00000469897 LRP6O75581 1613 aa19.78■□□□□ 0.76
CPSF4-210ENST00000469897 AHDC1Q5TGY3 1603 aaPredicted RBP19.77■□□□□ 0.76
CPSF4-210ENST00000469897 STK26Q9P289 416 aa19.77■□□□□ 0.76
CPSF4-210ENST00000469897 ASXL1Q8IXJ9 1541 aa19.76■□□□□ 0.75
CPSF4-210ENST00000469897 CCDC144AA2RUR9 1427 aa19.76■□□□□ 0.75
CPSF4-210ENST00000469897 SETD5Q9C0A6 1442 aa19.75■□□□□ 0.75
CPSF4-210ENST00000469897 TMEM132EQ6IEE7 984 aa19.74■□□□□ 0.75
CPSF4-210ENST00000469897 C1orf167Q5SNV9 1468 aa19.73■□□□□ 0.75
CPSF4-210ENST00000469897 WAPLQ7Z5K2 1190 aa19.73■□□□□ 0.75
CPSF4-210ENST00000469897 PTCH1Q13635 1447 aa19.72■□□□□ 0.75
CPSF4-210ENST00000469897 KIF1BO60333 1816 aa19.72■□□□□ 0.75
CPSF4-210ENST00000469897 RXRBP28702 533 aa19.71■□□□□ 0.75
CPSF4-210ENST00000469897 C8orf37Q96NL8 207 aa19.7■□□□□ 0.74
CPSF4-210ENST00000469897 AFF2P51816 1311 aa19.7■□□□□ 0.74
CPSF4-210ENST00000469897 ANKRD30BQ9BXX2 1392 aa19.7■□□□□ 0.74
CPSF4-210ENST00000469897 SPATA31E1Q6ZUB1 1445 aa19.69■□□□□ 0.74
CPSF4-210ENST00000469897 ESCO1Q5FWF5 840 aa19.69■□□□□ 0.74
CPSF4-210ENST00000469897 PNPLA6Q8IY17 1366 aa19.69■□□□□ 0.74
CPSF4-210ENST00000469897 NUTM2FA1L443 756 aa19.68■□□□□ 0.74
CPSF4-210ENST00000469897 ADAMTS2O95450 1211 aa19.68■□□□□ 0.74
CPSF4-210ENST00000469897 SOS2Q07890 1332 aaPredicted RBP19.68■□□□□ 0.74
CPSF4-210ENST00000469897 ACIN1Q9UKV3 1341 aaKnown RBP19.68■□□□□ 0.74
CPSF4-210ENST00000469897 NGLY1Q96IV0 654 aa19.66■□□□□ 0.74
CPSF4-210ENST00000469897 QTRT2Q9H974 415 aaKnown RBP19.66■□□□□ 0.74
CPSF4-210ENST00000469897 FOXO3O43524 673 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms