RNA–Protein interactions for RNA: ENST00000469354.1

EPHA4-211, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 2,893 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-211ENST00000469354 HNRNPUQ00839 825 aaKnown RBP eCLIP11.79□□□□□ -0.52
EPHA4-211ENST00000469354 FAM9BQ8IZU0 186 aa11.79□□□□□ -0.52
EPHA4-211ENST00000469354 RNF17Q9BXT8 1623 aaKnown RBP11.79□□□□□ -0.52
EPHA4-211ENST00000469354 NPATQ14207 1427 aa11.78□□□□□ -0.52
EPHA4-211ENST00000469354 DIP2BQ9P265 1576 aa11.78□□□□□ -0.52
EPHA4-211ENST00000469354 DIP2CQ9Y2E4 1556 aa11.78□□□□□ -0.52
EPHA4-211ENST00000469354 STAC3Q96MF2 364 aa11.78□□□□□ -0.52
EPHA4-211ENST00000469354 RICTORQ6R327 1708 aa11.78□□□□□ -0.52
EPHA4-211ENST00000469354 TMEM132AQ24JP5 1023 aa11.77□□□□□ -0.52
EPHA4-211ENST00000469354 TESK2Q96S53 571 aa11.77□□□□□ -0.52
EPHA4-211ENST00000469354 LMTK2Q8IWU2 1503 aa11.77□□□□□ -0.52
EPHA4-211ENST00000469354 ADGRF5Q8IZF2 1346 aa11.77□□□□□ -0.53
EPHA4-211ENST00000469354 CFAP70Q5T0N1 1121 aa11.77□□□□□ -0.53
EPHA4-211ENST00000469354 PDIA4P13667 645 aaKnown RBP11.76□□□□□ -0.53
EPHA4-211ENST00000469354 TMF1P82094 1093 aa11.76□□□□□ -0.53
EPHA4-211ENST00000469354 MADDQ8WXG6 1647 aa11.76□□□□□ -0.53
EPHA4-211ENST00000469354 DISP3Q9P2K9 1392 aa11.76□□□□□ -0.53
EPHA4-211ENST00000469354 ABCC3O15438 1527 aa11.75□□□□□ -0.53
EPHA4-211ENST00000469354 KIF1BO60333 1816 aa11.75□□□□□ -0.53
EPHA4-211ENST00000469354 NUTM2DQ5VT03 806 aaPredicted RBP11.73□□□□□ -0.53
EPHA4-211ENST00000469354 LAMC1P11047 1609 aa11.73□□□□□ -0.53
EPHA4-211ENST00000469354 NOS1P29475 1434 aa11.72□□□□□ -0.53
EPHA4-211ENST00000469354 MLECQ14165 292 aa11.72□□□□□ -0.53
EPHA4-211ENST00000469354 SENP3Q9H4L4 574 aaPredicted RBP11.72□□□□□ -0.53
EPHA4-211ENST00000469354 COL17A1Q9UMD9 1497 aaPredicted RBP11.72□□□□□ -0.53
EPHA4-211ENST00000469354 PANK3Q9H999 370 aa11.71□□□□□ -0.54
EPHA4-211ENST00000469354 SCAF11Q99590 1463 aaKnown RBP11.71□□□□□ -0.54
EPHA4-211ENST00000469354 MROH2AA6NES4 1674 aa11.71□□□□□ -0.54
EPHA4-211ENST00000469354 IDI1Q13907 227 aa11.7□□□□□ -0.54
EPHA4-211ENST00000469354 TMC1Q8TDI8 760 aa11.7□□□□□ -0.54
EPHA4-211ENST00000469354 CAMSAP1Q5T5Y3 1602 aa11.7□□□□□ -0.54
EPHA4-211ENST00000469354 CC2D1BQ5T0F9 858 aaKnown RBP11.69□□□□□ -0.54
EPHA4-211ENST00000469354 FBXO31Q5XUX0 539 aaPredicted RBP11.69□□□□□ -0.54
EPHA4-211ENST00000469354 CHMP4AQ9BY43 222 aa11.69□□□□□ -0.54
EPHA4-211ENST00000469354 MYOM2P54296 1465 aa11.69□□□□□ -0.54
EPHA4-211ENST00000469354 EIF3AQ14152 1382 aaKnown RBP11.69□□□□□ -0.54
EPHA4-211ENST00000469354 NEURL4Q96JN8 1562 aa11.69□□□□□ -0.54
EPHA4-211ENST00000469354 ADGRB3O60242 1522 aa11.68□□□□□ -0.54
EPHA4-211ENST00000469354 PER1O15534 1290 aaPredicted RBP11.68□□□□□ -0.54
EPHA4-211ENST00000469354 RALBP1Q15311 655 aa11.68□□□□□ -0.54
EPHA4-211ENST00000469354 TMEM132EQ6IEE7 984 aa11.68□□□□□ -0.54
EPHA4-211ENST00000469354 SUPT16HQ9Y5B9 1047 aaKnown RBP11.68□□□□□ -0.54
EPHA4-211ENST00000469354 SIGLEC1Q9BZZ2 1709 aa11.68□□□□□ -0.54
EPHA4-211ENST00000469354 ZMYM4Q5VZL5 1548 aa11.68□□□□□ -0.54
EPHA4-211ENST00000469354 SENP3-EIF4A1A0A087X0R7 540 aa11.67□□□□□ -0.54
EPHA4-211ENST00000469354 DHX37Q8IY37 1157 aaKnown RBP11.67□□□□□ -0.54
EPHA4-211ENST00000469354 TRAK1Q9UPV9 953 aa11.67□□□□□ -0.54
EPHA4-211ENST00000469354 KTN1Q86UP2 1357 aaKnown RBP11.67□□□□□ -0.54
EPHA4-211ENST00000469354 IQGAP1P46940 1657 aa11.67□□□□□ -0.54
EPHA4-211ENST00000469354 CDCA8Q53HL2 280 aa11.67□□□□□ -0.54
EPHA4-211ENST00000469354 SLC52A1Q9NWF4 448 aa11.66□□□□□ -0.54
EPHA4-211ENST00000469354 RPGRIP1LQ68CZ1 1315 aa11.66□□□□□ -0.54
EPHA4-211ENST00000469354 MYBBP1AQ9BQG0 1328 aaKnown RBP11.66□□□□□ -0.54
EPHA4-211ENST00000469354 ARHGAP31Q2M1Z3 1444 aa11.66□□□□□ -0.54
EPHA4-211ENST00000469354 VGFO15240 615 aaPredicted RBP11.65□□□□□ -0.54
EPHA4-211ENST00000469354 SYNMO15061 1565 aa11.65□□□□□ -0.54
EPHA4-211ENST00000469354 C14orf93Q9H972 538 aaKnown RBP11.65□□□□□ -0.54
EPHA4-211ENST00000469354 STAG3Q9UJ98 1225 aa11.65□□□□□ -0.54
EPHA4-211ENST00000469354 KIF13AQ9H1H9 1805 aa11.65□□□□□ -0.54
EPHA4-211ENST00000469354 IFT172Q9UG01 1749 aa11.65□□□□□ -0.55
EPHA4-211ENST00000469354 FKBP8Q14318 412 aa11.65□□□□□ -0.55
EPHA4-211ENST00000469354 KIAA1210Q9ULL0 1709 aa11.64□□□□□ -0.55
EPHA4-211ENST00000469354 NEFLP07196 543 aa11.64□□□□□ -0.55
EPHA4-211ENST00000469354 PNISRQ8TF01 805 aaKnown RBP11.64□□□□□ -0.55
EPHA4-211ENST00000469354 KNSTRNQ9Y448 316 aa11.64□□□□□ -0.55
EPHA4-211ENST00000469354 NRXN1Q9ULB1 1477 aa11.63□□□□□ -0.55
EPHA4-211ENST00000469354 ZC3H13Q5T200 1668 aaKnown RBP11.63□□□□□ -0.55
EPHA4-211ENST00000469354 PIK3C2GO75747 1445 aa11.63□□□□□ -0.55
EPHA4-211ENST00000469354 ESF1Q9H501 851 aaKnown RBP11.63□□□□□ -0.55
EPHA4-211ENST00000469354 PPLO60437 1756 aa11.63□□□□□ -0.55
EPHA4-211ENST00000469354 CENPJQ9HC77 1338 aaPredicted RBP11.62□□□□□ -0.55
EPHA4-211ENST00000469354 NLRP13Q86W25 1043 aa11.62□□□□□ -0.55
EPHA4-211ENST00000469354 BRD4O60885 1362 aaPredicted RBP11.61□□□□□ -0.55
EPHA4-211ENST00000469354 PARD3Q8TEW0 1356 aa11.61□□□□□ -0.55
EPHA4-211ENST00000469354 ZBED9Q6R2W3 1325 aa11.61□□□□□ -0.55
EPHA4-211ENST00000469354 PIK3C2BO00750 1634 aa11.61□□□□□ -0.55
EPHA4-211ENST00000469354 STK26Q9P289 416 aa11.6□□□□□ -0.55
EPHA4-211ENST00000469354 PPP6R1Q9UPN7 881 aa11.6□□□□□ -0.55
EPHA4-211ENST00000469354 PREX1Q8TCU6 1659 aa11.6□□□□□ -0.55
EPHA4-211ENST00000469354 SAFB2Q14151 953 aaKnown RBP eCLIP11.6□□□□□ -0.55
EPHA4-211ENST00000469354 UBE2Q2Q8WVN8 375 aa11.59□□□□□ -0.55
EPHA4-211ENST00000469354 AGLP35573 1532 aa11.59□□□□□ -0.55
EPHA4-211ENST00000469354 NEXMIFQ5QGS0 1516 aa11.59□□□□□ -0.55
EPHA4-211ENST00000469354 ERVK-7P63135 1459 aa11.58□□□□□ -0.56
EPHA4-211ENST00000469354 CLTCQ00610 1675 aaKnown RBP11.58□□□□□ -0.56
EPHA4-211ENST00000469354 MYO5BQ9ULV0 1848 aa11.58□□□□□ -0.56
EPHA4-211ENST00000469354 TRHP20396 242 aaPredicted RBP11.57□□□□□ -0.56
EPHA4-211ENST00000469354 REREQ9P2R6 1566 aa11.57□□□□□ -0.56
EPHA4-211ENST00000469354 SETBP1Q9Y6X0 1596 aa11.57□□□□□ -0.56
EPHA4-211ENST00000469354 SALL2Q9Y467 1007 aaPredicted RBP11.57□□□□□ -0.56
EPHA4-211ENST00000469354 ADGRB1O14514 1584 aa11.56□□□□□ -0.56
EPHA4-211ENST00000469354 IRX6P78412 446 aaPredicted RBP11.56□□□□□ -0.56
EPHA4-211ENST00000469354 ARHGEF40Q8TER5 1519 aa11.56□□□□□ -0.56
EPHA4-211ENST00000469354 KDM5AP29375 1690 aaKnown RBP11.56□□□□□ -0.56
EPHA4-211ENST00000469354 PDE4CQ08493 712 aa11.56□□□□□ -0.56
EPHA4-211ENST00000469354 TMEM131LA2VDJ0 1609 aa11.55□□□□□ -0.56
EPHA4-211ENST00000469354 SAMD1Q6SPF0 538 aaPredicted RBP11.55□□□□□ -0.56
EPHA4-211ENST00000469354 ZBTB22O15209 634 aa11.54□□□□□ -0.56
EPHA4-211ENST00000469354 SLC12A5Q9H2X9 1139 aa11.54□□□□□ -0.56
EPHA4-211ENST00000469354 FBXO3Q9UK99 471 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms