RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ZBTB22O15209 634 aa10.48□□□□□ -0.73
COL6A3-208ENST00000468792 RAPGEF3O95398 923 aa10.48□□□□□ -0.73
COL6A3-208ENST00000468792 NBPF1Q3BBV0 1214 aa10.48□□□□□ -0.73
COL6A3-208ENST00000468792 SCAF11Q99590 1463 aaKnown RBP10.48□□□□□ -0.73
COL6A3-208ENST00000468792 AGLP35573 1532 aa10.48□□□□□ -0.73
COL6A3-208ENST00000468792 IQGAP1P46940 1657 aa10.47□□□□□ -0.73
COL6A3-208ENST00000468792 IFT172Q9UG01 1749 aa10.47□□□□□ -0.73
COL6A3-208ENST00000468792 FAM69CQ0P6D2 419 aa10.47□□□□□ -0.73
COL6A3-208ENST00000468792 FOXD4L1Q9NU39 408 aa10.46□□□□□ -0.73
COL6A3-208ENST00000468792 PIK3C2BO00750 1634 aa10.46□□□□□ -0.74
COL6A3-208ENST00000468792 CAMSAP1Q5T5Y3 1602 aa10.46□□□□□ -0.74
COL6A3-208ENST00000468792 SETBP1Q9Y6X0 1596 aa10.45□□□□□ -0.74
COL6A3-208ENST00000468792 EIF3AQ14152 1382 aaKnown RBP10.45□□□□□ -0.74
COL6A3-208ENST00000468792 TMF1P82094 1093 aa10.45□□□□□ -0.74
COL6A3-208ENST00000468792 RALBP1Q15311 655 aa10.45□□□□□ -0.74
COL6A3-208ENST00000468792 CDCA8Q53HL2 280 aa10.45□□□□□ -0.74
COL6A3-208ENST00000468792 SLC52A1Q9NWF4 448 aa10.45□□□□□ -0.74
COL6A3-208ENST00000468792 DMRT2Q9Y5R5 561 aa10.45□□□□□ -0.74
COL6A3-208ENST00000468792 SBNO2Q9Y2G9 1366 aa10.44□□□□□ -0.74
COL6A3-208ENST00000468792 ZFYVE9O95405 1425 aa10.43□□□□□ -0.74
COL6A3-208ENST00000468792 YEATS2Q9ULM3 1422 aa10.43□□□□□ -0.74
COL6A3-208ENST00000468792 GGT6Q6P531 493 aa10.43□□□□□ -0.74
COL6A3-208ENST00000468792 PER1O15534 1290 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-208ENST00000468792 INSRP06213 1382 aa10.41□□□□□ -0.74
COL6A3-208ENST00000468792 UGGT1Q9NYU2 1555 aa10.41□□□□□ -0.74
COL6A3-208ENST00000468792 PPLO60437 1756 aa10.41□□□□□ -0.74
COL6A3-208ENST00000468792 PIK3C2GO75747 1445 aa10.41□□□□□ -0.74
COL6A3-208ENST00000468792 BRD4O60885 1362 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-208ENST00000468792 MYO3AQ8NEV4 1616 aa10.4□□□□□ -0.74
COL6A3-208ENST00000468792 C14orf93Q9H972 538 aaKnown RBP10.4□□□□□ -0.74
COL6A3-208ENST00000468792 MRS2Q9HD23 443 aa10.4□□□□□ -0.74
COL6A3-208ENST00000468792 MROH2AA6NES4 1674 aa10.4□□□□□ -0.74
COL6A3-208ENST00000468792 PARD3Q8TEW0 1356 aa10.39□□□□□ -0.75
COL6A3-208ENST00000468792 DISP3Q9P2K9 1392 aa10.39□□□□□ -0.75
COL6A3-208ENST00000468792 SYNMO15061 1565 aa10.39□□□□□ -0.75
COL6A3-208ENST00000468792 SIGLEC1Q9BZZ2 1709 aa10.39□□□□□ -0.75
COL6A3-208ENST00000468792 PUS7Q96PZ0 661 aaKnown RBP10.39□□□□□ -0.75
COL6A3-208ENST00000468792 NPC1L1Q9UHC9 1359 aa10.39□□□□□ -0.75
COL6A3-208ENST00000468792 ADGRF5Q8IZF2 1346 aa10.38□□□□□ -0.75
COL6A3-208ENST00000468792 MYBBP1AQ9BQG0 1328 aaKnown RBP10.38□□□□□ -0.75
COL6A3-208ENST00000468792 KIF13AQ9H1H9 1805 aa10.38□□□□□ -0.75
COL6A3-208ENST00000468792 VGFO15240 615 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-208ENST00000468792 ZBED9Q6R2W3 1325 aa10.37□□□□□ -0.75
COL6A3-208ENST00000468792 HOXD11P31277 338 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-208ENST00000468792 ADGRB1O14514 1584 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 CCDC184Q52MB2 194 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 CFAP70Q5T0N1 1121 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 NLRP13Q86W25 1043 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 PNISRQ8TF01 805 aaKnown RBP10.36□□□□□ -0.75
COL6A3-208ENST00000468792 PREX1Q8TCU6 1659 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 NEXMIFQ5QGS0 1516 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 ARHGEF40Q8TER5 1519 aa10.36□□□□□ -0.75
COL6A3-208ENST00000468792 LRPPRCP42704 1394 aaKnown RBP10.36□□□□□ -0.75
COL6A3-208ENST00000468792 HNRNPUQ00839 825 aaKnown RBP eCLIP10.35□□□□□ -0.75
COL6A3-208ENST00000468792 TMEM131LA2VDJ0 1609 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 IDI1Q13907 227 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 POLR3GLQ9BT43 218 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 PANK3Q9H999 370 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 ERVK-7P63135 1459 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 SPATA31D1Q6ZQQ2 1576 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 TSPOAP1O95153 1857 aa10.34□□□□□ -0.75
COL6A3-208ENST00000468792 TMC1Q8TDI8 760 aa10.33□□□□□ -0.76
COL6A3-208ENST00000468792 KDM5AP29375 1690 aaKnown RBP10.33□□□□□ -0.76
COL6A3-208ENST00000468792 ERICH6BQ5W0A0 696 aa10.32□□□□□ -0.76
COL6A3-208ENST00000468792 SUPT16HQ9Y5B9 1047 aaKnown RBP10.32□□□□□ -0.76
COL6A3-208ENST00000468792 CENPJQ9HC77 1338 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-208ENST00000468792 CFAP65Q6ZU64 1925 aaKnown RBP10.31□□□□□ -0.76
COL6A3-208ENST00000468792 ASXL1Q8IXJ9 1541 aa10.3□□□□□ -0.76
COL6A3-208ENST00000468792 CHGAP10645 457 aaKnown RBP10.3□□□□□ -0.76
COL6A3-208ENST00000468792 AMER1Q5JTC6 1135 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-208ENST00000468792 FAM9BQ8IZU0 186 aa10.3□□□□□ -0.76
COL6A3-208ENST00000468792 MYOM1P52179 1685 aa10.3□□□□□ -0.76
COL6A3-208ENST00000468792 KNSTRNQ9Y448 316 aa10.29□□□□□ -0.76
COL6A3-208ENST00000468792 SMG6Q86US8 1419 aaKnown RBP10.27□□□□□ -0.77
COL6A3-208ENST00000468792 NEFLP07196 543 aa10.27□□□□□ -0.77
COL6A3-208ENST00000468792 CLTCQ00610 1675 aaKnown RBP10.27□□□□□ -0.77
COL6A3-208ENST00000468792 NINLQ9Y2I6 1382 aa10.26□□□□□ -0.77
COL6A3-208ENST00000468792 A2ML1A8K2U0 1454 aa10.26□□□□□ -0.77
COL6A3-208ENST00000468792 QRICH2Q9H0J4 1663 aa10.25□□□□□ -0.77
COL6A3-208ENST00000468792 ARHGEF28Q8N1W1 1705 aaKnown RBP10.25□□□□□ -0.77
COL6A3-208ENST00000468792 PDE3BQ13370 1112 aa10.25□□□□□ -0.77
COL6A3-208ENST00000468792 PELP1Q8IZL8 1130 aaKnown RBP10.25□□□□□ -0.77
COL6A3-208ENST00000468792 USP32Q8NFA0 1604 aa10.25□□□□□ -0.77
COL6A3-208ENST00000468792 ZMYM3Q14202 1370 aa10.25□□□□□ -0.77
COL6A3-208ENST00000468792 DLC1Q96QB1 1528 aa10.24□□□□□ -0.77
COL6A3-208ENST00000468792 HDGFP51858 240 aaKnown RBP10.24□□□□□ -0.77
COL6A3-208ENST00000468792 FBXO31Q5XUX0 539 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-208ENST00000468792 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.24□□□□□ -0.77
COL6A3-208ENST00000468792 EVC2Q86UK5 1308 aa10.24□□□□□ -0.77
COL6A3-208ENST00000468792 BLMP54132 1417 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-208ENST00000468792 MYO5BQ9ULV0 1848 aa10.23□□□□□ -0.77
COL6A3-208ENST00000468792 SIRT1Q96EB6 747 aa10.23□□□□□ -0.77
COL6A3-208ENST00000468792 TRAK1Q9UPV9 953 aa10.23□□□□□ -0.77
COL6A3-208ENST00000468792 ALKQ9UM73 1620 aa10.22□□□□□ -0.77
COL6A3-208ENST00000468792 PPP2R1AP30153 589 aa10.22□□□□□ -0.77
COL6A3-208ENST00000468792 CC2D1BQ5T0F9 858 aaKnown RBP10.22□□□□□ -0.77
COL6A3-208ENST00000468792 ESF1Q9H501 851 aaKnown RBP10.22□□□□□ -0.77
COL6A3-208ENST00000468792 NUDCQ9Y266 331 aa10.22□□□□□ -0.77
COL6A3-208ENST00000468792 RNF123Q5XPI4 1314 aa10.22□□□□□ -0.77
COL6A3-208ENST00000468792 NSD2O96028 1365 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms