RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 PANK3Q9H999 370 aa9.52□□□□□ -0.88
USP48-206ENST00000464577 NBPF1Q3BBV0 1214 aa9.52□□□□□ -0.89
USP48-206ENST00000464577 C20orf194Q5TEA3 1177 aa9.52□□□□□ -0.89
USP48-206ENST00000464577 DUSP27Q5VZP5 1158 aa9.52□□□□□ -0.89
USP48-206ENST00000464577 VIRMAQ69YN4 1812 aaKnown RBP9.51□□□□□ -0.89
USP48-206ENST00000464577 BRPF3Q9ULD4 1205 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 SYNMO15061 1565 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 PLXNC1O60486 1568 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 PLEKHH1Q9ULM0 1364 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 WDR7Q9Y4E6 1490 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 PIK3C2GO75747 1445 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 SKAP1Q86WV1 359 aa9.51□□□□□ -0.89
USP48-206ENST00000464577 FRAT1Q92837 279 aaPredicted RBP9.51□□□□□ -0.89
USP48-206ENST00000464577 ABCC2Q92887 1545 aa9.5□□□□□ -0.89
USP48-206ENST00000464577 MAGI2Q86UL8 1455 aa9.5□□□□□ -0.89
USP48-206ENST00000464577 NPM3O75607 178 aaKnown RBP9.5□□□□□ -0.89
USP48-206ENST00000464577 CDC42BPBQ9Y5S2 1711 aa9.5□□□□□ -0.89
USP48-206ENST00000464577 IQGAP1P46940 1657 aa9.49□□□□□ -0.89
USP48-206ENST00000464577 ADAMTS8Q9UP79 889 aa9.49□□□□□ -0.89
USP48-206ENST00000464577 GOLGA2Q08379 1002 aa9.49□□□□□ -0.89
USP48-206ENST00000464577 NPC1L1Q9UHC9 1359 aa9.49□□□□□ -0.89
USP48-206ENST00000464577 PPP2R1AP30153 589 aa9.48□□□□□ -0.89
USP48-206ENST00000464577 HNRNPMP52272 730 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP48-206ENST00000464577 WDR43Q15061 677 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP48-206ENST00000464577 TRMT2AQ8IZ69 625 aaKnown RBP9.48□□□□□ -0.89
USP48-206ENST00000464577 SLC4A3P48751 1232 aa9.47□□□□□ -0.89
USP48-206ENST00000464577 SLFN5Q08AF3 891 aa9.47□□□□□ -0.89
USP48-206ENST00000464577 MADDQ8WXG6 1647 aa9.47□□□□□ -0.89
USP48-206ENST00000464577 ASXL1Q8IXJ9 1541 aa9.47□□□□□ -0.89
USP48-206ENST00000464577 NINLQ9Y2I6 1382 aa9.47□□□□□ -0.89
USP48-206ENST00000464577 JPH4Q96JJ6 628 aa9.47□□□□□ -0.89
USP48-206ENST00000464577 NKTRP30414 1462 aaKnown RBP9.46□□□□□ -0.89
USP48-206ENST00000464577 SYCP2Q9BX26 1530 aa9.46□□□□□ -0.89
USP48-206ENST00000464577 DUOX2Q9NRD8 1548 aa9.46□□□□□ -0.9
USP48-206ENST00000464577 RGL3Q3MIN7 710 aa9.46□□□□□ -0.9
USP48-206ENST00000464577 AMER1Q5JTC6 1135 aaPredicted RBP9.46□□□□□ -0.9
USP48-206ENST00000464577 FAM43AQ8N2R8 423 aa9.46□□□□□ -0.9
USP48-206ENST00000464577 CHMP7Q8WUX9 453 aaPredicted RBP9.46□□□□□ -0.9
USP48-206ENST00000464577 FRAT2O75474 233 aaPredicted RBP9.45□□□□□ -0.9
USP48-206ENST00000464577 CDCA8Q53HL2 280 aa9.45□□□□□ -0.9
USP48-206ENST00000464577 NGEFQ8N5V2 710 aa9.45□□□□□ -0.9
USP48-206ENST00000464577 KNSTRNQ9Y448 316 aa9.45□□□□□ -0.9
USP48-206ENST00000464577 SCAPERQ9BY12 1400 aa9.45□□□□□ -0.9
USP48-206ENST00000464577 MYOM1P52179 1685 aa9.44□□□□□ -0.9
USP48-206ENST00000464577 ZMYM3Q14202 1370 aa9.44□□□□□ -0.9
USP48-206ENST00000464577 SCAF11Q99590 1463 aaKnown RBP9.43□□□□□ -0.9
USP48-206ENST00000464577 SPHKAPQ2M3C7 1700 aa9.43□□□□□ -0.9
USP48-206ENST00000464577 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.43□□□□□ -0.9
USP48-206ENST00000464577 MAPK8IP3Q9UPT6 1336 aa9.43□□□□□ -0.9
USP48-206ENST00000464577 STAC3Q96MF2 364 aa9.43□□□□□ -0.9
USP48-206ENST00000464577 USP19O94966 1318 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 CGNL1Q0VF96 1302 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 ERCC6Q03468 1493 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 E9PSI1 815 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 RGS3P49796 1198 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 PDE3AQ14432 1141 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 RSPH6AQ9H0K4 717 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 NLRP1Q9C000 1473 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 ARHGAP5Q13017 1502 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 TTC37Q6PGP7 1564 aa9.42□□□□□ -0.9
USP48-206ENST00000464577 BECN1Q14457 450 aa9.41□□□□□ -0.9
USP48-206ENST00000464577 UBE2Q2Q8WVN8 375 aa9.41□□□□□ -0.9
USP48-206ENST00000464577 TRPM2O94759 1503 aa9.41□□□□□ -0.9
USP48-206ENST00000464577 KDM5AP29375 1690 aaKnown RBP9.41□□□□□ -0.9
USP48-206ENST00000464577 KIAA1210Q9ULL0 1709 aa9.41□□□□□ -0.9
USP48-206ENST00000464577 CEP152O94986 1710 aa9.41□□□□□ -0.9
USP48-206ENST00000464577 AAMPQ13685 434 aa9.4□□□□□ -0.9
USP48-206ENST00000464577 NEURL4Q96JN8 1562 aa9.4□□□□□ -0.91
USP48-206ENST00000464577 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.4□□□□□ -0.91
USP48-206ENST00000464577 L1TD1Q5T7N2 865 aaKnown RBP9.39□□□□□ -0.91
USP48-206ENST00000464577 IGHDP01880 384 aa9.38□□□□□ -0.91
USP48-206ENST00000464577 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.38□□□□□ -0.917e-7■■■□□ 17.7
USP48-206ENST00000464577 CLUAP1Q96AJ1 413 aa9.38□□□□□ -0.91
USP48-206ENST00000464577 SPINK5Q9NQ38 1064 aaPredicted RBP9.38□□□□□ -0.91
USP48-206ENST00000464577 PTPRTO14522 1441 aa9.37□□□□□ -0.91
USP48-206ENST00000464577 APAF1O14727 1248 aa9.37□□□□□ -0.91
USP48-206ENST00000464577 BCAR3O75815 825 aa9.37□□□□□ -0.91
USP48-206ENST00000464577 CENPJQ9HC77 1338 aaPredicted RBP9.37□□□□□ -0.91
USP48-206ENST00000464577 ANTXR1Q9H6X2 564 aa9.36□□□□□ -0.91
USP48-206ENST00000464577 POLR3AO14802 1390 aaPredicted RBP9.36□□□□□ -0.91
USP48-206ENST00000464577 CCDC146Q8IYE0 955 aa9.36□□□□□ -0.91
USP48-206ENST00000464577 POGKQ9P215 609 aa9.36□□□□□ -0.91
USP48-206ENST00000464577 CLTCL1P53675 1640 aa9.36□□□□□ -0.91
USP48-206ENST00000464577 SHROOM2Q13796 1616 aa9.36□□□□□ -0.91
USP48-206ENST00000464577 FBLN2P98095 1184 aa9.35□□□□□ -0.91
USP48-206ENST00000464577 PMFBP1Q8TBY8 1022 aa9.35□□□□□ -0.91
USP48-206ENST00000464577 KCNA4P22459 653 aa9.35□□□□□ -0.91
USP48-206ENST00000464577 TBC1D32Q96NH3 1257 aa9.35□□□□□ -0.91
USP48-206ENST00000464577 ABCC1P33527 1531 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 DEPDC5O75140 1603 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 ERVK-7P63135 1459 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 IQSEC2Q5JU85 1478 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 TET3O43151 1660 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 SEC24BO95487 1268 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 UPF2Q9HAU5 1272 aaKnown RBP9.34□□□□□ -0.91
USP48-206ENST00000464577 MYO3AQ8NEV4 1616 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 MYOM2P54296 1465 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 SHPRHQ149N8 1683 aa9.34□□□□□ -0.91
USP48-206ENST00000464577 SBNO2Q9Y2G9 1366 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 EIF5BO60841 1220 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms