RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 SAMD7Q7Z3H4 446 aa13.47□□□□□ -0.25
PTCD3-205ENST00000464541 SPNS2Q8IVW8 549 aa13.47□□□□□ -0.25
PTCD3-205ENST00000464541 SLF2Q8IX21 1173 aa13.47□□□□□ -0.25
PTCD3-205ENST00000464541 NECTIN2Q92692 538 aa13.47□□□□□ -0.25
PTCD3-205ENST00000464541 LRCH3Q96II8 777 aa13.47□□□□□ -0.25
PTCD3-205ENST00000464541 MYT1LQ9UL68 1186 aa13.47□□□□□ -0.25
PTCD3-205ENST00000464541 SULF1Q8IWU6 871 aa13.46□□□□□ -0.25
PTCD3-205ENST00000464541 PARP9Q8IXQ6 854 aa13.46□□□□□ -0.25
PTCD3-205ENST00000464541 WNT2BQ93097 391 aa13.46□□□□□ -0.25
PTCD3-205ENST00000464541 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.46□□□□□ -0.25
PTCD3-205ENST00000464541 SOWAHBA6NEL2 793 aa13.44□□□□□ -0.26
PTCD3-205ENST00000464541 RSPH4AQ5TD94 716 aa13.44□□□□□ -0.26
PTCD3-205ENST00000464541 NLRP7Q8WX94 980 aa13.43□□□□□ -0.26
PTCD3-205ENST00000464541 GIGYF2Q6Y7W6 1299 aaKnown RBP13.42□□□□□ -0.26
PTCD3-205ENST00000464541 FAM217BQ9NTX9 383 aaPredicted RBP13.41□□□□□ -0.26
PTCD3-205ENST00000464541 BRPF1P55201 1214 aaPredicted RBP13.4□□□□□ -0.26
PTCD3-205ENST00000464541 THSD4Q6ZMP0 1018 aa13.4□□□□□ -0.26
PTCD3-205ENST00000464541 REPIN1Q9BWE0 567 aaKnown RBP13.4□□□□□ -0.26
PTCD3-205ENST00000464541 NEUROD2Q15784 382 aa13.39□□□□□ -0.27
PTCD3-205ENST00000464541 KCTD12Q96CX2 325 aaKnown RBP13.39□□□□□ -0.27
PTCD3-205ENST00000464541 TSR3Q9UJK0 312 aaKnown RBP13.38□□□□□ -0.27
PTCD3-205ENST00000464541 SSTR3P32745 418 aaPredicted RBP13.37□□□□□ -0.27
PTCD3-205ENST00000464541 KDM4CQ9H3R0 1056 aa13.37□□□□□ -0.27
PTCD3-205ENST00000464541 DDX11L8A8MPP1 907 aa13.36□□□□□ -0.27
PTCD3-205ENST00000464541 BCAMP50895 628 aa13.36□□□□□ -0.27
PTCD3-205ENST00000464541 RNF166Q96A37 237 aaPredicted RBP13.36□□□□□ -0.27
PTCD3-205ENST00000464541 GPBP1L1Q9HC44 474 aaPredicted RBP13.35□□□□□ -0.27
PTCD3-205ENST00000464541 RNF40O75150 1001 aa13.34□□□□□ -0.27
PTCD3-205ENST00000464541 CD46P15529 392 aa13.34□□□□□ -0.27
PTCD3-205ENST00000464541 PPP4CP60510 307 aa13.34□□□□□ -0.27
PTCD3-205ENST00000464541 NYAP1Q6ZVC0 841 aa13.34□□□□□ -0.27
PTCD3-205ENST00000464541 HPS5Q9UPZ3 1129 aa13.34□□□□□ -0.27
PTCD3-205ENST00000464541 RDH13Q8NBN7 331 aa13.33□□□□□ -0.28
PTCD3-205ENST00000464541 PRR14Q9BWN1 585 aa13.33□□□□□ -0.28
PTCD3-205ENST00000464541 SLC10A3P09131 477 aa13.32□□□□□ -0.28
PTCD3-205ENST00000464541 MS4A1P11836 297 aa13.31□□□□□ -0.28
PTCD3-205ENST00000464541 MMRN1Q13201 1228 aa13.3□□□□□ -0.28
PTCD3-205ENST00000464541 DDRGK1Q96HY6 314 aa13.3□□□□□ -0.28
PTCD3-205ENST00000464541 KMT5BQ4FZB7 885 aa13.29□□□□□ -0.28
PTCD3-205ENST00000464541 GCGRP47871 477 aa13.28□□□□□ -0.28
PTCD3-205ENST00000464541 HCSTQ9UBK5 93 aa13.28□□□□□ -0.28
PTCD3-205ENST00000464541 CFHP08603 1231 aa13.27□□□□□ -0.29
PTCD3-205ENST00000464541 BEGAINQ9BUH8 593 aa13.27□□□□□ -0.29
PTCD3-205ENST00000464541 WBP1LQ9NX94 342 aa13.27□□□□□ -0.29
PTCD3-205ENST00000464541 DIXDC1Q155Q3 683 aa13.26□□□□□ -0.29
PTCD3-205ENST00000464541 USP46P62068 366 aa13.24□□□□□ -0.29
PTCD3-205ENST00000464541 ACTN4O43707 911 aaKnown RBP13.23□□□□□ -0.29
PTCD3-205ENST00000464541 PTPN5P54829 565 aa13.23□□□□□ -0.29
PTCD3-205ENST00000464541 KDM4AO75164 1064 aa13.22□□□□□ -0.29
PTCD3-205ENST00000464541 FAM117AQ9C073 453 aa13.22□□□□□ -0.29
PTCD3-205ENST00000464541 NUTM1Q86Y26 1132 aa13.21□□□□□ -0.29
PTCD3-205ENST00000464541 APLP1P51693 650 aa13.2□□□□□ -0.3
PTCD3-205ENST00000464541 GRIPAP1Q4V328 841 aa13.2□□□□□ -0.3
PTCD3-205ENST00000464541 RSPH6AQ9H0K4 717 aa13.2□□□□□ -0.3
PTCD3-205ENST00000464541 SPIRE2Q8WWL2 714 aa13.17□□□□□ -0.3
PTCD3-205ENST00000464541 PLEKHG3A1L390 1219 aa13.16□□□□□ -0.3
PTCD3-205ENST00000464541 ATP6V1AP38606 617 aa13.16□□□□□ -0.3
PTCD3-205ENST00000464541 TBC1D2Q9BYX2 928 aa13.16□□□□□ -0.3
PTCD3-205ENST00000464541 GJA5P36382 358 aa13.15□□□□□ -0.3
PTCD3-205ENST00000464541 FUT2Q10981 343 aa13.15□□□□□ -0.3
PTCD3-205ENST00000464541 GOPCQ9HD26 462 aa13.15□□□□□ -0.3
PTCD3-205ENST00000464541 PCDHB3Q9Y5E6 796 aa13.15□□□□□ -0.3
PTCD3-205ENST00000464541 HOXA2O43364 376 aa13.14□□□□□ -0.31
PTCD3-205ENST00000464541 IL27Q8NEV9 243 aa13.14□□□□□ -0.31
PTCD3-205ENST00000464541 SH3D19Q5HYK7 790 aa13.12□□□□□ -0.31
PTCD3-205ENST00000464541 MYSM1Q5VVJ2 828 aa13.11□□□□□ -0.31
PTCD3-205ENST00000464541 NR1I2O75469 434 aa13.1□□□□□ -0.31
PTCD3-205ENST00000464541 MORN1Q5T089 497 aa13.1□□□□□ -0.31
PTCD3-205ENST00000464541 SPTLC1O15269 473 aa13.08□□□□□ -0.32
PTCD3-205ENST00000464541 SKIV2LQ15477 1246 aaKnown RBP13.08□□□□□ -0.32
PTCD3-205ENST00000464541 TMEM132AQ24JP5 1023 aa13.08□□□□□ -0.32
PTCD3-205ENST00000464541 TUSC1Q2TAM9 212 aa13.08□□□□□ -0.32
PTCD3-205ENST00000464541 MOXD2PA6NHM9 499 aa13.07□□□□□ -0.32
PTCD3-205ENST00000464541 RSBN1LQ6PCB5 846 aaPredicted RBP13.07□□□□□ -0.32
PTCD3-205ENST00000464541 IL21Q9HBE4 155 aa13.07□□□□□ -0.32
PTCD3-205ENST00000464541 BLOC1S3Q6QNY0 202 aa13.06□□□□□ -0.32
PTCD3-205ENST00000464541 MTRQ99707 1265 aa13.06□□□□□ -0.32
PTCD3-205ENST00000464541 SALL2Q9Y467 1007 aaPredicted RBP13.06□□□□□ -0.32
PTCD3-205ENST00000464541 FDX1P10109 184 aa13.05□□□□□ -0.32
PTCD3-205ENST00000464541 CLK2P49760 499 aaKnown RBP13.05□□□□□ -0.32
PTCD3-205ENST00000464541 Q3C1V9 767 aa13.05□□□□□ -0.32
PTCD3-205ENST00000464541 PUS10Q3MIT2 529 aaKnown RBP13.05□□□□□ -0.32
PTCD3-205ENST00000464541 RIC3Q7Z5B4 369 aa13.05□□□□□ -0.32
PTCD3-205ENST00000464541 ITGBL1O95965 494 aaPredicted RBP13.04□□□□□ -0.32
PTCD3-205ENST00000464541 TJAP1Q5JTD0 557 aa13.04□□□□□ -0.32
PTCD3-205ENST00000464541 SLC27A5Q9Y2P5 690 aa13.04□□□□□ -0.32
PTCD3-205ENST00000464541 SCUBE3Q8IX30 993 aa13.03□□□□□ -0.32
PTCD3-205ENST00000464541 NDUFV2P19404 249 aa13.02□□□□□ -0.33
PTCD3-205ENST00000464541 COPS2P61201 443 aa13.02□□□□□ -0.33
PTCD3-205ENST00000464541 PCMTD1Q96MG8 357 aaPredicted RBP13.02□□□□□ -0.33
PTCD3-205ENST00000464541 ZPR1O75312 459 aa13.01□□□□□ -0.33
PTCD3-205ENST00000464541 PRPF38BQ5VTL8 546 aaKnown RBP13□□□□□ -0.33
PTCD3-205ENST00000464541 KCNC4Q03721 635 aa12.99□□□□□ -0.33
PTCD3-205ENST00000464541 HLA-CQ95604 372 aa12.99□□□□□ -0.33
PTCD3-205ENST00000464541 POLR3EQ9NVU0 708 aa12.99□□□□□ -0.33
PTCD3-205ENST00000464541 LIMD1Q9UGP4 676 aa12.99□□□□□ -0.33
PTCD3-205ENST00000464541 SPDYE5A6NIY4 337 aa12.98□□□□□ -0.33
PTCD3-205ENST00000464541 FMNL1O95466 1100 aaPredicted RBP12.98□□□□□ -0.33
PTCD3-205ENST00000464541 PLSCR2Q9NRY7 297 aa12.98□□□□□ -0.33
PTCD3-205ENST00000464541 PCDHGC3Q9UN70 934 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms