RNA–Protein interactions for RNA: ENST00000462899.1

SMC3-202, Transcript of structural maintenance of chromosomes 3, humanhuman

TSL 5

Gene SMC3, Length 777 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-202ENST00000462899 PHLPP1O60346 1717 aa12.51□□□□□ -0.41
SMC3-202ENST00000462899 SRCAPQ6ZRS2 3230 aa12.5□□□□□ -0.41
SMC3-202ENST00000462899 COL16A1Q07092 1604 aaPredicted RBP12.5□□□□□ -0.41
SMC3-202ENST00000462899 NKTRP30414 1462 aaKnown RBP12.49□□□□□ -0.41
SMC3-202ENST00000462899 TMEM2Q9UHN6 1383 aa12.49□□□□□ -0.41
SMC3-202ENST00000462899 CHD2O14647 1828 aaKnown RBP12.48□□□□□ -0.41
SMC3-202ENST00000462899 EFCAB6Q5THR3 1501 aa12.48□□□□□ -0.41
SMC3-202ENST00000462899 TMEM94Q12767 1356 aa12.48□□□□□ -0.41
SMC3-202ENST00000462899 LMTK2Q8IWU2 1503 aa12.47□□□□□ -0.41
SMC3-202ENST00000462899 TSPY4P0CV99 314 aa12.47□□□□□ -0.41
SMC3-202ENST00000462899 TSPY10P0CW01 314 aa12.47□□□□□ -0.41
SMC3-202ENST00000462899 ERBINQ96RT1 1412 aa12.46□□□□□ -0.41
SMC3-202ENST00000462899 MYO5BQ9ULV0 1848 aa12.46□□□□□ -0.41
SMC3-202ENST00000462899 TXNDC2Q86VQ3 553 aa12.46□□□□□ -0.41
SMC3-202ENST00000462899 ADGRB3O60242 1522 aa12.46□□□□□ -0.42
SMC3-202ENST00000462899 SHPRHQ149N8 1683 aa12.45□□□□□ -0.42
SMC3-202ENST00000462899 LRP6O75581 1613 aa12.44□□□□□ -0.42
SMC3-202ENST00000462899 MYOM3Q5VTT5 1437 aa12.44□□□□□ -0.42
SMC3-202ENST00000462899 KCNA6P17658 529 aa12.43□□□□□ -0.42
SMC3-202ENST00000462899 POLA2Q14181 598 aa12.43□□□□□ -0.42
SMC3-202ENST00000462899 NOS1P29475 1434 aa12.43□□□□□ -0.42
SMC3-202ENST00000462899 AHDC1Q5TGY3 1603 aaPredicted RBP12.42□□□□□ -0.42
SMC3-202ENST00000462899 KIF15Q9NS87 1388 aa12.42□□□□□ -0.42
SMC3-202ENST00000462899 EID1Q9Y6B2 187 aa12.41□□□□□ -0.42
SMC3-202ENST00000462899 JCADQ9P266 1359 aa12.41□□□□□ -0.42
SMC3-202ENST00000462899 DIP2AQ14689 1571 aa12.4□□□□□ -0.42
SMC3-202ENST00000462899 ABCC5O15440 1437 aa12.4□□□□□ -0.42
SMC3-202ENST00000462899 GCC2Q8IWJ2 1684 aa12.4□□□□□ -0.42
SMC3-202ENST00000462899 ZFYVE9O95405 1425 aa12.39□□□□□ -0.43
SMC3-202ENST00000462899 FGD6Q6ZV73 1430 aa12.39□□□□□ -0.43
SMC3-202ENST00000462899 PTPN23Q9H3S7 1636 aa12.39□□□□□ -0.43
SMC3-202ENST00000462899 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.39□□□□□ -0.43
SMC3-202ENST00000462899 VPS8Q8N3P4 1428 aa12.38□□□□□ -0.43
SMC3-202ENST00000462899 TMEM131LA2VDJ0 1609 aa12.37□□□□□ -0.43
SMC3-202ENST00000462899 IDI1Q13907 227 aa12.37□□□□□ -0.43
SMC3-202ENST00000462899 RBM33Q96EV2 1170 aaKnown RBP12.37□□□□□ -0.43
SMC3-202ENST00000462899 MSH6P52701 1360 aa12.37□□□□□ -0.43
SMC3-202ENST00000462899 UPF1Q92900 1129 aaKnown RBP eCLIP12.36□□□□□ -0.43
SMC3-202ENST00000462899 SLC26A8Q96RN1 970 aa12.36□□□□□ -0.43
SMC3-202ENST00000462899 DAPK1P53355 1430 aa12.36□□□□□ -0.43
SMC3-202ENST00000462899 NCOA3Q9Y6Q9 1424 aa12.36□□□□□ -0.43
SMC3-202ENST00000462899 CDK12Q9NYV4 1490 aaPredicted RBP12.35□□□□□ -0.43
SMC3-202ENST00000462899 PROSER2Q86WR7 435 aaPredicted RBP12.35□□□□□ -0.43
SMC3-202ENST00000462899 RPRD2Q5VT52 1461 aaKnown RBP12.34□□□□□ -0.43
SMC3-202ENST00000462899 NHSL1Q5SYE7 1610 aa12.34□□□□□ -0.43
SMC3-202ENST00000462899 PLEKHG1Q9ULL1 1385 aa12.34□□□□□ -0.43
SMC3-202ENST00000462899 KANK4Q5T7N3 995 aaPredicted RBP12.34□□□□□ -0.43
SMC3-202ENST00000462899 SLAIN2Q9P270 581 aa12.34□□□□□ -0.43
SMC3-202ENST00000462899 SPATA31A6Q5VVP1 1343 aa12.34□□□□□ -0.43
SMC3-202ENST00000462899 EP400Q96L91 3159 aa12.33□□□□□ -0.44
SMC3-202ENST00000462899 ADGRL2O95490 1459 aa12.32□□□□□ -0.44
SMC3-202ENST00000462899 KANK1Q14678 1352 aa12.31□□□□□ -0.44
SMC3-202ENST00000462899 ADAMTS13Q76LX8 1427 aa12.31□□□□□ -0.44
SMC3-202ENST00000462899 RRP7BPQ9NSQ0 103 aa12.3□□□□□ -0.44
SMC3-202ENST00000462899 XRN1Q8IZH2 1706 aaKnown RBP12.3□□□□□ -0.44
SMC3-202ENST00000462899 RIMS2Q9UQ26 1411 aa12.29□□□□□ -0.44
SMC3-202ENST00000462899 ZNF772Q68DY9 489 aaPredicted RBP12.29□□□□□ -0.44
SMC3-202ENST00000462899 SLC52A1Q9NWF4 448 aa12.29□□□□□ -0.44
SMC3-202ENST00000462899 STAG3Q9UJ98 1225 aa12.29□□□□□ -0.44
SMC3-202ENST00000462899 NRXN3Q9Y4C0 1643 aa12.29□□□□□ -0.44
SMC3-202ENST00000462899 E9PCH4 1651 aa12.29□□□□□ -0.44
SMC3-202ENST00000462899 UNC13BO14795 1591 aa12.28□□□□□ -0.44
SMC3-202ENST00000462899 DCCP43146 1447 aa12.27□□□□□ -0.45
SMC3-202ENST00000462899 ASXL1Q8IXJ9 1541 aa12.27□□□□□ -0.45
SMC3-202ENST00000462899 PIK3R4Q99570 1358 aa12.26□□□□□ -0.45
SMC3-202ENST00000462899 ANKRD30AQ9BXX3 1397 aa12.26□□□□□ -0.45
SMC3-202ENST00000462899 RGS12O14924 1447 aa12.26□□□□□ -0.45
SMC3-202ENST00000462899 SETD5Q9C0A6 1442 aa12.26□□□□□ -0.45
SMC3-202ENST00000462899 TRPM2O94759 1503 aa12.26□□□□□ -0.45
SMC3-202ENST00000462899 LAMC1P11047 1609 aa12.26□□□□□ -0.45
SMC3-202ENST00000462899 TRIM52Q96A61 297 aa12.25□□□□□ -0.45
SMC3-202ENST00000462899 TBX22Q9Y458 520 aa12.25□□□□□ -0.45
SMC3-202ENST00000462899 PTPRUQ92729 1446 aa12.25□□□□□ -0.45
SMC3-202ENST00000462899 NALCNQ8IZF0 1738 aa12.23□□□□□ -0.45
SMC3-202ENST00000462899 IQGAP3Q86VI3 1631 aa12.23□□□□□ -0.45
SMC3-202ENST00000462899 MST1RQ04912 1400 aa12.23□□□□□ -0.45
SMC3-202ENST00000462899 BRINP3Q76B58 766 aa12.23□□□□□ -0.45
SMC3-202ENST00000462899 CADPS2Q86UW7 1296 aa12.23□□□□□ -0.45
SMC3-202ENST00000462899 SETBP1Q9Y6X0 1596 aa12.22□□□□□ -0.45
SMC3-202ENST00000462899 RXRBP28702 533 aa12.22□□□□□ -0.45
SMC3-202ENST00000462899 C19orf44Q9H6X5 657 aa12.22□□□□□ -0.45
SMC3-202ENST00000462899 MEX3CQ5U5Q3 659 aaKnown RBP12.21□□□□□ -0.45
SMC3-202ENST00000462899 ANKRD50Q9ULJ7 1429 aa12.2□□□□□ -0.46
SMC3-202ENST00000462899 AFF2P51816 1311 aa12.2□□□□□ -0.46
SMC3-202ENST00000462899 CHIC2Q9UKJ5 165 aa12.18□□□□□ -0.46
SMC3-202ENST00000462899 PNPLA6Q8IY17 1366 aa12.18□□□□□ -0.46
SMC3-202ENST00000462899 PPP1R15AO75807 674 aaPredicted RBP12.17□□□□□ -0.46
SMC3-202ENST00000462899 ATF3P18847 181 aa12.17□□□□□ -0.46
SMC3-202ENST00000462899 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.17□□□□□ -0.46
SMC3-202ENST00000462899 BCANQ96GW7 911 aa12.17□□□□□ -0.46
SMC3-202ENST00000462899 COL22A1Q8NFW1 1626 aaPredicted RBP12.17□□□□□ -0.46
SMC3-202ENST00000462899 SPHKAPQ2M3C7 1700 aa12.17□□□□□ -0.46
SMC3-202ENST00000462899 MARF1Q9Y4F3 1742 aaKnown RBP12.17□□□□□ -0.46
SMC3-202ENST00000462899 HDGFP51858 240 aaKnown RBP12.16□□□□□ -0.46
SMC3-202ENST00000462899 ADGRL3Q9HAR2 1447 aa12.15□□□□□ -0.46
SMC3-202ENST00000462899 RBM6P78332 1123 aaKnown RBP12.14□□□□□ -0.47
SMC3-202ENST00000462899 MKRN4PQ13434 485 aaPredicted RBP12.14□□□□□ -0.47
SMC3-202ENST00000462899 C14orf37Q86TY3 774 aa12.14□□□□□ -0.47
SMC3-202ENST00000462899 AMOTL2Q9Y2J4 779 aa12.14□□□□□ -0.47
SMC3-202ENST00000462899 NUTM2BA6NNL0 878 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms