RNA–Protein interactions for RNA: ENST00000462267.1

APP-211, Transcript of amyloid beta precursor protein, humanhuman

TSL 2

Gene APP, Length 667 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-211ENST00000462267 NCOA3Q9Y6Q9 1424 aa24.21■■□□□ 1.47
APP-211ENST00000462267 RXRBP28702 533 aa24.21■■□□□ 1.47
APP-211ENST00000462267 SLC52A1Q9NWF4 448 aa24.2■■□□□ 1.46
APP-211ENST00000462267 ADGRB3O60242 1522 aa24.2■■□□□ 1.46
APP-211ENST00000462267 NOS1P29475 1434 aa24.19■■□□□ 1.46
APP-211ENST00000462267 CDK12Q9NYV4 1490 aaPredicted RBP24.17■■□□□ 1.46
APP-211ENST00000462267 ABCC5O15440 1437 aa24.17■■□□□ 1.46
APP-211ENST00000462267 PLEKHG1Q9ULL1 1385 aa24.16■■□□□ 1.46
APP-211ENST00000462267 HDGFP51858 240 aaKnown RBP24.15■■□□□ 1.46
APP-211ENST00000462267 KANK4Q5T7N3 995 aaPredicted RBP24.14■■□□□ 1.45
APP-211ENST00000462267 C14orf37Q86TY3 774 aa24.14■■□□□ 1.45
APP-211ENST00000462267 CADPS2Q86UW7 1296 aa24.14■■□□□ 1.45
APP-211ENST00000462267 CHD2O14647 1828 aaKnown RBP24.14■■□□□ 1.45
APP-211ENST00000462267 AHDC1Q5TGY3 1603 aaPredicted RBP24.13■■□□□ 1.45
APP-211ENST00000462267 TBX22Q9Y458 520 aa24.13■■□□□ 1.45
APP-211ENST00000462267 SHPRHQ149N8 1683 aa24.12■■□□□ 1.45
APP-211ENST00000462267 ZFYVE9O95405 1425 aa24.12■■□□□ 1.45
APP-211ENST00000462267 C19orf44Q9H6X5 657 aa24.12■■□□□ 1.45
APP-211ENST00000462267 PPP1R15AO75807 674 aaPredicted RBP24.11■■□□□ 1.45
APP-211ENST00000462267 VPS8Q8N3P4 1428 aa24.1■■□□□ 1.45
APP-211ENST00000462267 ATF3P18847 181 aa24.1■■□□□ 1.45
APP-211ENST00000462267 CROCC2H7BZ55 1655 aa24.1■■□□□ 1.45
APP-211ENST00000462267 DAPK1P53355 1430 aa24.08■■□□□ 1.44
APP-211ENST00000462267 ANKRD30AQ9BXX3 1397 aa24.07■■□□□ 1.44
APP-211ENST00000462267 RIMS2Q9UQ26 1411 aa24.07■■□□□ 1.44
APP-211ENST00000462267 NUTM2BA6NNL0 878 aaPredicted RBP24.06■■□□□ 1.44
APP-211ENST00000462267 NUTM2EB1AL46 878 aaPredicted RBP24.06■■□□□ 1.44
APP-211ENST00000462267 NUTM2AQ8IVF1 878 aaPredicted RBP24.06■■□□□ 1.44
APP-211ENST00000462267 RPRD2Q5VT52 1461 aaKnown RBP24.05■■□□□ 1.44
APP-211ENST00000462267 AFF2P51816 1311 aa24.05■■□□□ 1.44
APP-211ENST00000462267 SRCAPQ6ZRS2 3230 aa24.05■■□□□ 1.44
APP-211ENST00000462267 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.04■■□□□ 1.44
APP-211ENST00000462267 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.04■■□□□ 1.44
APP-211ENST00000462267 PIK3R4Q99570 1358 aa24.03■■□□□ 1.44
APP-211ENST00000462267 BRINP3Q76B58 766 aa24.03■■□□□ 1.44
APP-211ENST00000462267 DIP2AQ14689 1571 aa24.02■■□□□ 1.44
APP-211ENST00000462267 PTPN23Q9H3S7 1636 aa24.02■■□□□ 1.44
APP-211ENST00000462267 CHIC2Q9UKJ5 165 aa24■■□□□ 1.43
APP-211ENST00000462267 RBM6P78332 1123 aaKnown RBP23.99■■□□□ 1.43
APP-211ENST00000462267 ADAMTS13Q76LX8 1427 aa23.99■■□□□ 1.43
APP-211ENST00000462267 SETD5Q9C0A6 1442 aa23.98■■□□□ 1.43
APP-211ENST00000462267 TMEM131LA2VDJ0 1609 aa23.97■■□□□ 1.43
APP-211ENST00000462267 RGS12O14924 1447 aa23.97■■□□□ 1.43
APP-211ENST00000462267 QTRT2Q9H974 415 aaKnown RBP23.97■■□□□ 1.43
APP-211ENST00000462267 MYO5BQ9ULV0 1848 aa23.96■■□□□ 1.43
APP-211ENST00000462267 DCCP43146 1447 aa23.95■■□□□ 1.42
APP-211ENST00000462267 LRRC59Q96AG4 307 aaKnown RBP23.95■■□□□ 1.42
APP-211ENST00000462267 GCC2Q8IWJ2 1684 aa23.95■■□□□ 1.42
APP-211ENST00000462267 NUTM2DQ5VT03 806 aaPredicted RBP23.93■■□□□ 1.42
APP-211ENST00000462267 C8orf37Q96NL8 207 aa23.93■■□□□ 1.42
APP-211ENST00000462267 AMOTL2Q9Y2J4 779 aa23.93■■□□□ 1.42
APP-211ENST00000462267 CHGAP10645 457 aaKnown RBP23.92■■□□□ 1.42
APP-211ENST00000462267 FOXD1Q16676 465 aa23.92■■□□□ 1.42
APP-211ENST00000462267 ASXL1Q8IXJ9 1541 aa23.92■■□□□ 1.42
APP-211ENST00000462267 NGLY1Q96IV0 654 aa23.9■■□□□ 1.42
APP-211ENST00000462267 TRPM2O94759 1503 aa23.89■■□□□ 1.42
APP-211ENST00000462267 ATAD2Q6PL18 1390 aa23.89■■□□□ 1.41
APP-211ENST00000462267 ADGRL2O95490 1459 aa23.88■■□□□ 1.41
APP-211ENST00000462267 PTPRUQ92729 1446 aa23.87■■□□□ 1.41
APP-211ENST00000462267 ANKRD50Q9ULJ7 1429 aa23.87■■□□□ 1.41
APP-211ENST00000462267 PNPLA6Q8IY17 1366 aa23.87■■□□□ 1.41
APP-211ENST00000462267 MST1RQ04912 1400 aa23.86■■□□□ 1.41
APP-211ENST00000462267 ZRANB1Q9UGI0 708 aa23.86■■□□□ 1.41
APP-211ENST00000462267 NHSL1Q5SYE7 1610 aa23.85■■□□□ 1.41
APP-211ENST00000462267 APLP2Q06481 763 aa23.83■■□□□ 1.41
APP-211ENST00000462267 ADAMTS2O95450 1211 aa23.79■■□□□ 1.4
APP-211ENST00000462267 UNC13BO14795 1591 aa23.78■■□□□ 1.4
APP-211ENST00000462267 DDX17Q92841 729 aaKnown RBP23.78■■□□□ 1.4
APP-211ENST00000462267 XRN1Q8IZH2 1706 aaKnown RBP23.77■■□□□ 1.4
APP-211ENST00000462267 TRPC5Q9UL62 973 aaPredicted RBP23.77■■□□□ 1.4
APP-211ENST00000462267 CCDC125Q86Z20 511 aa23.76■■□□□ 1.39
APP-211ENST00000462267 USP21Q9UK80 565 aa23.76■■□□□ 1.39
APP-211ENST00000462267 ADGRL3Q9HAR2 1447 aa23.75■■□□□ 1.39
APP-211ENST00000462267 LOC105371045A0A1W2PR82 267 aa23.72■■□□□ 1.39
APP-211ENST00000462267 FNBP4Q8N3X1 1017 aaPredicted RBP23.72■■□□□ 1.39
APP-211ENST00000462267 SETBP1Q9Y6X0 1596 aa23.72■■□□□ 1.39
APP-211ENST00000462267 E9PCH4 1651 aa23.72■■□□□ 1.39
APP-211ENST00000462267 PTCH1Q13635 1447 aa23.7■■□□□ 1.38
APP-211ENST00000462267 METP08581 1390 aa23.7■■□□□ 1.38
APP-211ENST00000462267 FAM50AQ14320 339 aaKnown RBP23.7■■□□□ 1.38
APP-211ENST00000462267 NRXN3Q9Y4C0 1643 aa23.7■■□□□ 1.38
APP-211ENST00000462267 SOS2Q07890 1332 aaPredicted RBP23.68■■□□□ 1.38
APP-211ENST00000462267 C1orf167Q5SNV9 1468 aa23.68■■□□□ 1.38
APP-211ENST00000462267 ATRNO75882 1429 aa23.67■■□□□ 1.38
APP-211ENST00000462267 LAMC1P11047 1609 aa23.66■■□□□ 1.38
APP-211ENST00000462267 EP400Q96L91 3159 aa23.65■■□□□ 1.38
APP-211ENST00000462267 IQGAP3Q86VI3 1631 aa23.63■■□□□ 1.37
APP-211ENST00000462267 NALCNQ8IZF0 1738 aa23.62■■□□□ 1.37
APP-211ENST00000462267 ZNF326Q5BKZ1 582 aaKnown RBP23.62■■□□□ 1.37
APP-211ENST00000462267 ORAI2Q96SN7 254 aa23.6■■□□□ 1.37
APP-211ENST00000462267 NUP155O75694 1391 aa23.6■■□□□ 1.37
APP-211ENST00000462267 BCL9LQ86UU0 1499 aa23.57■■□□□ 1.36
APP-211ENST00000462267 ROCK1Q13464 1354 aa23.56■■□□□ 1.36
APP-211ENST00000462267 COL22A1Q8NFW1 1626 aaPredicted RBP23.56■■□□□ 1.36
APP-211ENST00000462267 GJD4Q96KN9 370 aaPredicted RBP23.56■■□□□ 1.36
APP-211ENST00000462267 MYOM2P54296 1465 aa23.55■■□□□ 1.36
APP-211ENST00000462267 BLMP54132 1417 aaPredicted RBP23.54■■□□□ 1.36
APP-211ENST00000462267 NPHP3Q7Z494 1330 aa23.51■■□□□ 1.35
APP-211ENST00000462267 ROBO2Q9HCK4 1378 aa23.5■■□□□ 1.35
APP-211ENST00000462267 NEXMIFQ5QGS0 1516 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms