RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.91□□□□□ -0.02
NPHP4-204ENST00000460696 PBRM1Q86U86 1689 aa14.9□□□□□ -0.02
NPHP4-204ENST00000460696 ERCC6L2Q5T890 1561 aa14.9□□□□□ -0.02
NPHP4-204ENST00000460696 E9PSI1 815 aa14.9□□□□□ -0.02
NPHP4-204ENST00000460696 SLC4A3P48751 1232 aa14.9□□□□□ -0.02
NPHP4-204ENST00000460696 SLC12A5Q9H2X9 1139 aa14.9□□□□□ -0.02
NPHP4-204ENST00000460696 CCDC9Q9Y3X0 531 aaKnown RBP14.89□□□□□ -0.03
NPHP4-204ENST00000460696 TERF2IPQ9NYB0 399 aa14.89□□□□□ -0.03
NPHP4-204ENST00000460696 PZPP20742 1482 aa14.89□□□□□ -0.03
NPHP4-204ENST00000460696 CGNL1Q0VF96 1302 aa14.89□□□□□ -0.03
NPHP4-204ENST00000460696 FANCAO15360 1455 aa14.88□□□□□ -0.03
NPHP4-204ENST00000460696 EVC2Q86UK5 1308 aa14.88□□□□□ -0.03
NPHP4-204ENST00000460696 KDM6BO15054 1643 aa14.88□□□□□ -0.03
NPHP4-204ENST00000460696 SMC4Q9NTJ3 1288 aa14.88□□□□□ -0.03
NPHP4-204ENST00000460696 CENPQQ7L2Z9 268 aaPredicted RBP14.87□□□□□ -0.03
NPHP4-204ENST00000460696 ITPRIPQ8IWB1 547 aa14.87□□□□□ -0.03
NPHP4-204ENST00000460696 CABP2Q9NPB3 220 aa14.87□□□□□ -0.03
NPHP4-204ENST00000460696 MS4A1P11836 297 aa14.86□□□□□ -0.03
NPHP4-204ENST00000460696 PNNQ9H307 717 aaKnown RBP14.86□□□□□ -0.03
NPHP4-204ENST00000460696 SPRYD3Q8NCJ5 442 aa14.86□□□□□ -0.03
NPHP4-204ENST00000460696 MTHFSP49914 203 aa14.85□□□□□ -0.03
NPHP4-204ENST00000460696 DNMT1P26358 1616 aaKnown RBP14.85□□□□□ -0.03
NPHP4-204ENST00000460696 MSH5O43196 834 aa14.85□□□□□ -0.03
NPHP4-204ENST00000460696 DENND4BO75064 1496 aaPredicted RBP14.84□□□□□ -0.03
NPHP4-204ENST00000460696 DISP3Q9P2K9 1392 aa14.84□□□□□ -0.03
NPHP4-204ENST00000460696 GGNBP2Q9H3C7 697 aa14.84□□□□□ -0.03
NPHP4-204ENST00000460696 PROSER2Q86WR7 435 aaPredicted RBP14.84□□□□□ -0.03
NPHP4-204ENST00000460696 RTN4Q9NQC3 1192 aaKnown RBP14.84□□□□□ -0.03
NPHP4-204ENST00000460696 TEX14Q8IWB6 1497 aa14.83□□□□□ -0.03
NPHP4-204ENST00000460696 SKAP1Q86WV1 359 aa14.83□□□□□ -0.04
NPHP4-204ENST00000460696 RWDD1Q9H446 243 aaPredicted RBP14.83□□□□□ -0.04
NPHP4-204ENST00000460696 ITSN2Q9NZM3 1697 aa14.83□□□□□ -0.04
NPHP4-204ENST00000460696 POGZQ7Z3K3 1410 aa14.83□□□□□ -0.04
NPHP4-204ENST00000460696 SLKQ9H2G2 1235 aaPredicted RBP14.83□□□□□ -0.04
NPHP4-204ENST00000460696 WDR7Q9Y4E6 1490 aa14.83□□□□□ -0.04
NPHP4-204ENST00000460696 THEMISQ8N1K5 641 aaPredicted RBP14.82□□□□□ -0.04
NPHP4-204ENST00000460696 PANK1Q8TE04 598 aa14.82□□□□□ -0.04
NPHP4-204ENST00000460696 ELL2O00472 640 aaPredicted RBP14.82□□□□□ -0.04
NPHP4-204ENST00000460696 BCAR3O75815 825 aa14.82□□□□□ -0.04
NPHP4-204ENST00000460696 CHD1O14646 1710 aa14.82□□□□□ -0.04
NPHP4-204ENST00000460696 ABCC2Q92887 1545 aa14.81□□□□□ -0.04
NPHP4-204ENST00000460696 TCP11L2Q8N4U5 519 aa14.81□□□□□ -0.04
NPHP4-204ENST00000460696 NGDNQ8NEJ9 315 aaKnown RBP14.81□□□□□ -0.04
NPHP4-204ENST00000460696 ADGRF5Q8IZF2 1346 aa14.81□□□□□ -0.04
NPHP4-204ENST00000460696 DHX29Q7Z478 1369 aaKnown RBP14.81□□□□□ -0.04
NPHP4-204ENST00000460696 RALGAPBQ86X10 1494 aa14.81□□□□□ -0.04
NPHP4-204ENST00000460696 SYCP2Q9BX26 1530 aa14.81□□□□□ -0.04
NPHP4-204ENST00000460696 FAM161AQ3B820 660 aa14.8□□□□□ -0.04
NPHP4-204ENST00000460696 ANKLE2Q86XL3 938 aa14.8□□□□□ -0.04
NPHP4-204ENST00000460696 RUNDC1Q96C34 613 aa14.8□□□□□ -0.04
NPHP4-204ENST00000460696 PMFBP1Q8TBY8 1022 aa14.8□□□□□ -0.04
NPHP4-204ENST00000460696 IPO8O15397 1037 aaKnown RBP14.79□□□□□ -0.04
NPHP4-204ENST00000460696 C20orf194Q5TEA3 1177 aa14.79□□□□□ -0.04
NPHP4-204ENST00000460696 TESK2Q96S53 571 aa14.78□□□□□ -0.04
NPHP4-204ENST00000460696 FAM135AQ9P2D6 1515 aa14.77□□□□□ -0.04
NPHP4-204ENST00000460696 APBB1O00213 710 aa14.77□□□□□ -0.04
NPHP4-204ENST00000460696 EIF5BO60841 1220 aaKnown RBP14.77□□□□□ -0.04
NPHP4-204ENST00000460696 PRAG1Q86YV5 1406 aa14.77□□□□□ -0.05
NPHP4-204ENST00000460696 GCC2Q8IWJ2 1684 aa14.76□□□□□ -0.05
NPHP4-204ENST00000460696 NUTM2GQ5VZR2 741 aa14.75□□□□□ -0.05
NPHP4-204ENST00000460696 NUTM2BA6NNL0 878 aaPredicted RBP14.75□□□□□ -0.05
NPHP4-204ENST00000460696 NUTM2EB1AL46 878 aaPredicted RBP14.75□□□□□ -0.05
NPHP4-204ENST00000460696 ATF3P18847 181 aa14.75□□□□□ -0.05
NPHP4-204ENST00000460696 ZKSCAN2Q63HK3 967 aa14.75□□□□□ -0.05
NPHP4-204ENST00000460696 NUTM2AQ8IVF1 878 aaPredicted RBP14.75□□□□□ -0.05
NPHP4-204ENST00000460696 TRAPPC8Q9Y2L5 1435 aa14.75□□□□□ -0.05
NPHP4-204ENST00000460696 MFAP1P55081 439 aaKnown RBP14.75□□□□□ -0.05
NPHP4-204ENST00000460696 RIPK4P57078 832 aa14.75□□□□□ -0.05
NPHP4-204ENST00000460696 PHF23Q9BUL5 403 aaPredicted RBP14.75□□□□□ -0.05
NPHP4-204ENST00000460696 SPATA31E1Q6ZUB1 1445 aa14.74□□□□□ -0.05
NPHP4-204ENST00000460696 XPCQ01831 940 aaPredicted RBP14.74□□□□□ -0.05
NPHP4-204ENST00000460696 NGEFQ8N5V2 710 aa14.74□□□□□ -0.05
NPHP4-204ENST00000460696 PER1O15534 1290 aaPredicted RBP14.74□□□□□ -0.05
NPHP4-204ENST00000460696 DIAPH1O60610 1272 aaKnown RBP14.74□□□□□ -0.05
NPHP4-204ENST00000460696 IDI1Q13907 227 aa14.74□□□□□ -0.05
NPHP4-204ENST00000460696 ADGRL2O95490 1459 aa14.73□□□□□ -0.05
NPHP4-204ENST00000460696 PRAM1Q96QH2 718 aa14.73□□□□□ -0.05
NPHP4-204ENST00000460696 PLCH2O75038 1416 aa14.73□□□□□ -0.05
NPHP4-204ENST00000460696 BACH2Q9BYV9 841 aa14.73□□□□□ -0.05
NPHP4-204ENST00000460696 HMOX1P09601 288 aa14.72□□□□□ -0.05
NPHP4-204ENST00000460696 CSB-PGBD3P0DP91 1061 aa14.72□□□□□ -0.05
NPHP4-204ENST00000460696 LTV1Q96GA3 475 aaPredicted RBP14.72□□□□□ -0.05
NPHP4-204ENST00000460696 CHMP4BQ9H444 224 aaKnown RBP14.72□□□□□ -0.05
NPHP4-204ENST00000460696 SLFN5Q08AF3 891 aa14.71□□□□□ -0.05
NPHP4-204ENST00000460696 MEX3CQ5U5Q3 659 aaKnown RBP14.71□□□□□ -0.05
NPHP4-204ENST00000460696 TSPOAP1O95153 1857 aa14.71□□□□□ -0.06
NPHP4-204ENST00000460696 SHANK2Q9UPX8 1470 aa14.7□□□□□ -0.06
NPHP4-204ENST00000460696 TSR2Q969E8 191 aaKnown RBP14.7□□□□□ -0.06
NPHP4-204ENST00000460696 DZIP1LQ8IYY4 767 aaKnown RBP14.7□□□□□ -0.06
NPHP4-204ENST00000460696 HSP90AB1P08238 724 aaKnown RBP14.69□□□□□ -0.06
NPHP4-204ENST00000460696 CALD1Q05682 793 aaKnown RBP14.69□□□□□ -0.06
NPHP4-204ENST00000460696 AMER1Q5JTC6 1135 aaPredicted RBP14.69□□□□□ -0.06
NPHP4-204ENST00000460696 PARD3Q8TEW0 1356 aa14.69□□□□□ -0.06
NPHP4-204ENST00000460696 RTF1Q92541 710 aaKnown RBP14.69□□□□□ -0.06
NPHP4-204ENST00000460696 NSD3Q9BZ95 1437 aa14.69□□□□□ -0.06
NPHP4-204ENST00000460696 DUSP27Q5VZP5 1158 aa14.68□□□□□ -0.06
NPHP4-204ENST00000460696 HSCBQ8IWL3 235 aa14.68□□□□□ -0.06
NPHP4-204ENST00000460696 WWC1Q8IX03 1113 aa14.68□□□□□ -0.06
NPHP4-204ENST00000460696 UHRF1BP1Q6BDS2 1440 aa14.68□□□□□ -0.06
NPHP4-204ENST00000460696 NCKAP5LQ9HCH0 1330 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms