RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TMEM134Q9H6X4 195 aa9.58□□□□□ -0.88
USP40-209ENST00000452724 FAM161AQ3B820 660 aa9.57□□□□□ -0.88
USP40-209ENST00000452724 IL21Q9HBE4 155 aa9.57□□□□□ -0.88
USP40-209ENST00000452724 APLP1P51693 650 aa9.56□□□□□ -0.88
USP40-209ENST00000452724 RSPH4AQ5TD94 716 aa9.56□□□□□ -0.88
USP40-209ENST00000452724 MTRQ99707 1265 aa9.56□□□□□ -0.88
USP40-209ENST00000452724 PXYLP1Q8TE99 480 aa9.55□□□□□ -0.88
USP40-209ENST00000452724 TJAP1Q5JTD0 557 aa9.54□□□□□ -0.88
USP40-209ENST00000452724 METTL3Q86U44 580 aaKnown RBP9.54□□□□□ -0.88
USP40-209ENST00000452724 GPR37O15354 613 aa9.53□□□□□ -0.88
USP40-209ENST00000452724 KMT5BQ4FZB7 885 aa9.53□□□□□ -0.88
USP40-209ENST00000452724 PCDHB3Q9Y5E6 796 aa9.51□□□□□ -0.89
USP40-209ENST00000452724 FECHP22830 423 aa9.5□□□□□ -0.89
USP40-209ENST00000452724 COPS2P61201 443 aa9.49□□□□□ -0.89
USP40-209ENST00000452724 CFHP08603 1231 aa9.48□□□□□ -0.89
USP40-209ENST00000452724 DAXXQ9UER7 740 aaPredicted RBP9.47□□□□□ -0.89
USP40-209ENST00000452724 ACTN4O43707 911 aaKnown RBP9.46□□□□□ -0.9
USP40-209ENST00000452724 GGCXP38435 758 aa9.46□□□□□ -0.9
USP40-209ENST00000452724 ZNF516Q92618 1163 aa9.46□□□□□ -0.9
USP40-209ENST00000452724 MAP2K5Q13163 448 aa9.45□□□□□ -0.9
USP40-209ENST00000452724 SULF1Q8IWU6 871 aa9.45□□□□□ -0.9
USP40-209ENST00000452724 ZPR1O75312 459 aa9.44□□□□□ -0.9
USP40-209ENST00000452724 SLC10A3P09131 477 aa9.44□□□□□ -0.9
USP40-209ENST00000452724 RDH13Q8NBN7 331 aa9.44□□□□□ -0.9
USP40-209ENST00000452724 BLOC1S3Q6QNY0 202 aa9.43□□□□□ -0.9
USP40-209ENST00000452724 MINK1Q8N4C8 1332 aaPredicted RBP9.42□□□□□ -0.9
USP40-209ENST00000452724 DDX11L8A8MPP1 907 aa9.42□□□□□ -0.9
USP40-209ENST00000452724 NR1I2O75469 434 aa9.42□□□□□ -0.9
USP40-209ENST00000452724 PPP1R18Q6NYC8 613 aa9.42□□□□□ -0.9
USP40-209ENST00000452724 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP40-209ENST00000452724 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.42□□□□□ -0.9
USP40-209ENST00000452724 IRX2Q9BZI1 471 aaPredicted RBP9.41□□□□□ -0.9
USP40-209ENST00000452724 IRF6O14896 467 aa9.39□□□□□ -0.91
USP40-209ENST00000452724 LMOD2Q6P5Q4 547 aa9.39□□□□□ -0.91
USP40-209ENST00000452724 NKX2-3Q8TAU0 364 aa9.39□□□□□ -0.91
USP40-209ENST00000452724 TMUB1Q9BVT8 246 aa9.39□□□□□ -0.91
USP40-209ENST00000452724 NLRP7Q8WX94 980 aa9.38□□□□□ -0.91
USP40-209ENST00000452724 PHOX2BQ99453 314 aa9.38□□□□□ -0.91
USP40-209ENST00000452724 KRI1Q8N9T8 703 aaKnown RBP9.35□□□□□ -0.91
USP40-209ENST00000452724 PRKD2Q9BZL6 878 aa9.35□□□□□ -0.91
USP40-209ENST00000452724 V9GY48 417 aaPredicted RBP9.35□□□□□ -0.91
USP40-209ENST00000452724 GCGRP47871 477 aa9.34□□□□□ -0.91
USP40-209ENST00000452724 GRIPAP1Q4V328 841 aa9.34□□□□□ -0.91
USP40-209ENST00000452724 CCDC102AQ96A19 550 aa9.34□□□□□ -0.91
USP40-209ENST00000452724 TLL1O43897 1013 aa9.33□□□□□ -0.92
USP40-209ENST00000452724 ADH1BP00325 375 aa9.33□□□□□ -0.92
USP40-209ENST00000452724 ATP6V1AP38606 617 aa9.33□□□□□ -0.92
USP40-209ENST00000452724 PUS10Q3MIT2 529 aaKnown RBP9.33□□□□□ -0.92
USP40-209ENST00000452724 SCUBE3Q8IX30 993 aa9.33□□□□□ -0.92
USP40-209ENST00000452724 CLCN1P35523 988 aa9.32□□□□□ -0.92
USP40-209ENST00000452724 MDM2Q00987 491 aaPredicted RBP9.32□□□□□ -0.92
USP40-209ENST00000452724 FUT2Q10981 343 aa9.32□□□□□ -0.92
USP40-209ENST00000452724 LAPTM4AQ15012 233 aa9.31□□□□□ -0.92
USP40-209ENST00000452724 MORN1Q5T089 497 aa9.3□□□□□ -0.92
USP40-209ENST00000452724 SPSB2Q99619 263 aa9.3□□□□□ -0.92
USP40-209ENST00000452724 SLC6A16Q9GZN6 736 aa9.3□□□□□ -0.92
USP40-209ENST00000452724 GPCPD1Q9NPB8 672 aa9.3□□□□□ -0.92
USP40-209ENST00000452724 RNF223E7ERA6 249 aa9.29□□□□□ -0.92
USP40-209ENST00000452724 S1PR4O95977 384 aa9.29□□□□□ -0.92
USP40-209ENST00000452724 CD46P15529 392 aa9.29□□□□□ -0.92
USP40-209ENST00000452724 ANKLE1Q8NAG6 615 aa9.29□□□□□ -0.92
USP40-209ENST00000452724 FMNL1O95466 1100 aaPredicted RBP9.28□□□□□ -0.92
USP40-209ENST00000452724 BARGINQ6ZT62 677 aa9.28□□□□□ -0.92
USP40-209ENST00000452724 ZMYND10O75800 440 aa9.27□□□□□ -0.93
USP40-209ENST00000452724 TPRNQ4KMQ1 711 aa9.27□□□□□ -0.93
USP40-209ENST00000452724 ZC3H15Q8WU90 426 aaKnown RBP9.27□□□□□ -0.93
USP40-209ENST00000452724 KDM4AO75164 1064 aa9.26□□□□□ -0.93
USP40-209ENST00000452724 USP46P62068 366 aa9.26□□□□□ -0.93
USP40-209ENST00000452724 Q3C1V9 767 aa9.26□□□□□ -0.93
USP40-209ENST00000452724 SLC27A5Q9Y2P5 690 aa9.26□□□□□ -0.93
USP40-209ENST00000452724 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
USP40-209ENST00000452724 SLC19A1P41440 591 aa9.25□□□□□ -0.93
USP40-209ENST00000452724 GFRA3O60609 400 aa9.23□□□□□ -0.93
USP40-209ENST00000452724 PRKCSHP14314 528 aaPredicted RBP9.23□□□□□ -0.93
USP40-209ENST00000452724 TTLL12Q14166 644 aaPredicted RBP9.23□□□□□ -0.93
USP40-209ENST00000452724 Q6ZNB5 142 aa9.23□□□□□ -0.93
USP40-209ENST00000452724 FAM217BQ9NTX9 383 aaPredicted RBP9.23□□□□□ -0.93
USP40-209ENST00000452724 PPEF1O14829 653 aaPredicted RBP9.22□□□□□ -0.93
USP40-209ENST00000452724 NUTM1Q86Y26 1132 aa9.22□□□□□ -0.93
USP40-209ENST00000452724 THAP11Q96EK4 314 aa9.22□□□□□ -0.93
USP40-209ENST00000452724 NRG2O14511 850 aaPredicted RBP9.2□□□□□ -0.94
USP40-209ENST00000452724 BRICD5Q6PL45 260 aa9.2□□□□□ -0.94
USP40-209ENST00000452724 AMHR2Q16671 573 aa9.19□□□□□ -0.94
USP40-209ENST00000452724 MSS51Q4VC12 460 aa9.19□□□□□ -0.94
USP40-209ENST00000452724 PDZRN3Q9UPQ7 1066 aa9.19□□□□□ -0.94
USP40-209ENST00000452724 HOXA2O43364 376 aa9.18□□□□□ -0.94
USP40-209ENST00000452724 SPRYD7Q5W111 196 aa9.18□□□□□ -0.94
USP40-209ENST00000452724 ZNF598Q86UK7 904 aaKnown RBP9.18□□□□□ -0.94
USP40-209ENST00000452724 SSTR3P32745 418 aaPredicted RBP9.17□□□□□ -0.94
USP40-209ENST00000452724 RNF19BQ6ZMZ0 732 aa9.17□□□□□ -0.94
USP40-209ENST00000452724 FAM160A2Q8N612 972 aaPredicted RBP9.17□□□□□ -0.94
USP40-209ENST00000452724 AK7Q96M32 723 aa9.17□□□□□ -0.94
USP40-209ENST00000452724 FCF1Q9Y324 198 aaKnown RBP9.16□□□□□ -0.94
USP40-209ENST00000452724 ZNF697Q5TEC3 545 aa9.15□□□□□ -0.94
USP40-209ENST00000452724 LIAT1Q6ZQX7 453 aa9.15□□□□□ -0.94
USP40-209ENST00000452724 USB1Q9BQ65 265 aaKnown RBP9.15□□□□□ -0.94
USP40-209ENST00000452724 ZBTB24O43167 697 aaPredicted RBP9.14□□□□□ -0.95
USP40-209ENST00000452724 RPIAP49247 311 aa9.14□□□□□ -0.95
USP40-209ENST00000452724 GIGYF2Q6Y7W6 1299 aaKnown RBP9.14□□□□□ -0.95
USP40-209ENST00000452724 REPIN1Q9BWE0 567 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms