RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 API5Q9BZZ5 524 aaKnown RBP9.51□□□□□ -0.89
NEDD9-204ENST00000448183 HMGXB3Q12766 1538 aa9.51□□□□□ -0.89
NEDD9-204ENST00000448183 MCTP1Q6DN14 999 aa9.51□□□□□ -0.89
NEDD9-204ENST00000448183 PDE4CQ08493 712 aa9.5□□□□□ -0.89
NEDD9-204ENST00000448183 WASHC2CQ9Y4E1 1318 aa9.5□□□□□ -0.89
NEDD9-204ENST00000448183 LTV1Q96GA3 475 aaPredicted RBP9.5□□□□□ -0.89
NEDD9-204ENST00000448183 MARCH6O60337 910 aa9.5□□□□□ -0.89
NEDD9-204ENST00000448183 MRE11P49959 708 aa9.5□□□□□ -0.89
NEDD9-204ENST00000448183 AAMPQ13685 434 aa9.5□□□□□ -0.89
NEDD9-204ENST00000448183 TEX35Q5T0J7 233 aa9.5□□□□□ -0.89
NEDD9-204ENST00000448183 NUTM2DQ5VT03 806 aaPredicted RBP9.5□□□□□ -0.89
NEDD9-204ENST00000448183 AKAP17AQ02040 695 aaKnown RBP9.49□□□□□ -0.89
NEDD9-204ENST00000448183 C22orf23Q9BZE7 217 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 IPO7O95373 1038 aaKnown RBP9.49□□□□□ -0.89
NEDD9-204ENST00000448183 LRRFIP1Q32MZ4 808 aaKnown RBP9.49□□□□□ -0.89
NEDD9-204ENST00000448183 UACAQ9BZF9 1416 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 BICD2Q8TD16 824 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 EVC2Q86UK5 1308 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 TPM2P07951 284 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 HOMER1Q86YM7 354 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 ANO2Q9NQ90 1003 aa9.49□□□□□ -0.89
NEDD9-204ENST00000448183 FRAT2O75474 233 aaPredicted RBP9.48□□□□□ -0.89
NEDD9-204ENST00000448183 INTS3Q68E01 1043 aaKnown RBP9.48□□□□□ -0.89
NEDD9-204ENST00000448183 SYNE3Q6ZMZ3 975 aa9.48□□□□□ -0.89
NEDD9-204ENST00000448183 COG3Q96JB2 828 aa9.48□□□□□ -0.89
NEDD9-204ENST00000448183 TMX4Q9H1E5 349 aaPredicted RBP9.48□□□□□ -0.89
NEDD9-204ENST00000448183 ROCK1Q13464 1354 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 EID1Q9Y6B2 187 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 RNF20Q5VTR2 975 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 CCDC7Q96M83 1385 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 ANKRD20A12PQ8NF67 263 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 MAP7D2Q96T17 732 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 SMC3Q9UQE7 1217 aa9.47□□□□□ -0.89
NEDD9-204ENST00000448183 MTERF4Q7Z6M4 381 aaKnown RBP9.46□□□□□ -0.89
NEDD9-204ENST00000448183 LNPKQ9C0E8 428 aa9.46□□□□□ -0.89
NEDD9-204ENST00000448183 VPS37CA5D8V6 355 aaPredicted RBP9.46□□□□□ -0.89
NEDD9-204ENST00000448183 CPLX1O14810 134 aa9.46□□□□□ -0.89
NEDD9-204ENST00000448183 NEXNQ0ZGT2 675 aa9.46□□□□□ -0.89
NEDD9-204ENST00000448183 TRIM29Q14134 588 aa9.46□□□□□ -0.89
NEDD9-204ENST00000448183 DIAPH1O60610 1272 aaKnown RBP9.46□□□□□ -0.9
NEDD9-204ENST00000448183 RIPK4P57078 832 aa9.46□□□□□ -0.9
NEDD9-204ENST00000448183 TEFQ10587 303 aa9.46□□□□□ -0.9
NEDD9-204ENST00000448183 SASS6Q6UVJ0 657 aa9.46□□□□□ -0.9
NEDD9-204ENST00000448183 RUNDC1Q96C34 613 aa9.46□□□□□ -0.9
NEDD9-204ENST00000448183 FANCD2Q9BXW9 1451 aa9.46□□□□□ -0.9
NEDD9-204ENST00000448183 VGFO15240 615 aaPredicted RBP9.46□□□□□ -0.9
NEDD9-204ENST00000448183 NASPP49321 788 aaPredicted RBP9.46□□□□□ -0.9
NEDD9-204ENST00000448183 C9orf78Q9NZ63 289 aaPredicted RBP9.46□□□□□ -0.9
NEDD9-204ENST00000448183 CCDC9Q9Y3X0 531 aaKnown RBP9.46□□□□□ -0.9
NEDD9-204ENST00000448183 NUTM2FA1L443 756 aa9.45□□□□□ -0.9
NEDD9-204ENST00000448183 IFIT2P09913 472 aaKnown RBP9.45□□□□□ -0.9
NEDD9-204ENST00000448183 ARGLU1Q9NWB6 273 aaPredicted RBP9.45□□□□□ -0.9
NEDD9-204ENST00000448183 KIF7Q2M1P5 1343 aa9.45□□□□□ -0.9
NEDD9-204ENST00000448183 IFT57Q9NWB7 429 aa9.45□□□□□ -0.9
NEDD9-204ENST00000448183 HOOK1Q9UJC3 728 aaKnown RBP9.45□□□□□ -0.9
NEDD9-204ENST00000448183 GTF2E1P29083 439 aaPredicted RBP9.45□□□□□ -0.9
NEDD9-204ENST00000448183 CCDC39Q9UFE4 941 aa9.44□□□□□ -0.9
NEDD9-204ENST00000448183 CCDC73Q6ZRK6 1079 aa9.44□□□□□ -0.9
NEDD9-204ENST00000448183 ANO8Q9HCE9 1232 aaPredicted RBP9.44□□□□□ -0.9
NEDD9-204ENST00000448183 R3HCC1Q9Y3T6 440 aaKnown RBP9.44□□□□□ -0.9
NEDD9-204ENST00000448183 CNTLNQ9NXG0 1405 aa9.44□□□□□ -0.9
NEDD9-204ENST00000448183 C1orf141Q5JVX7 400 aa9.44□□□□□ -0.9
NEDD9-204ENST00000448183 VPS53Q5VIR6 699 aa9.44□□□□□ -0.9
NEDD9-204ENST00000448183 MNS1Q8NEH6 495 aa9.44□□□□□ -0.9
NEDD9-204ENST00000448183 CCDC47Q96A33 483 aaKnown RBP9.44□□□□□ -0.9
NEDD9-204ENST00000448183 TRAK2O60296 914 aa9.43□□□□□ -0.9
NEDD9-204ENST00000448183 CDC45O75419 566 aa9.43□□□□□ -0.9
NEDD9-204ENST00000448183 HSP90AB4PQ58FF6 505 aa9.43□□□□□ -0.9
NEDD9-204ENST00000448183 PCMTD1Q96MG8 357 aaPredicted RBP9.43□□□□□ -0.9
NEDD9-204ENST00000448183 GNAI1P63096 354 aa9.43□□□□□ -0.9
NEDD9-204ENST00000448183 FKBP5Q13451 457 aaPredicted RBP9.43□□□□□ -0.9
NEDD9-204ENST00000448183 EIF2S2P20042 333 aaKnown RBP9.42□□□□□ -0.9
NEDD9-204ENST00000448183 TRDNQ13061 729 aa9.42□□□□□ -0.9
NEDD9-204ENST00000448183 PANK1Q8TE04 598 aa9.42□□□□□ -0.9
NEDD9-204ENST00000448183 ACBD3Q9H3P7 528 aa9.42□□□□□ -0.9
NEDD9-204ENST00000448183 G3V3G9 751 aa9.42□□□□□ -0.9
NEDD9-204ENST00000448183 DCAF8Q5TAQ9 597 aa9.42□□□□□ -0.9
NEDD9-204ENST00000448183 MBD3O95983 291 aa9.42□□□□□ -0.9
NEDD9-204ENST00000448183 TRHP20396 242 aaPredicted RBP9.42□□□□□ -0.9
NEDD9-204ENST00000448183 BRD4O60885 1362 aaPredicted RBP9.42□□□□□ -0.9
NEDD9-204ENST00000448183 G3BP1Q13283 466 aaKnown RBP eCLIP9.42□□□□□ -0.91e-7■■□□□ 12.7
NEDD9-204ENST00000448183 MINK1Q8N4C8 1332 aaPredicted RBP9.41□□□□□ -0.9
NEDD9-204ENST00000448183 ERC2O15083 957 aa9.41□□□□□ -0.9
NEDD9-204ENST00000448183 DDX58O95786 925 aaKnown RBP9.41□□□□□ -0.9
NEDD9-204ENST00000448183 HSP90B2PQ58FF3 399 aa9.41□□□□□ -0.9
NEDD9-204ENST00000448183 RNF214Q8ND24 703 aa9.41□□□□□ -0.9
NEDD9-204ENST00000448183 JPH4Q96JJ6 628 aa9.41□□□□□ -0.9
NEDD9-204ENST00000448183 PRM3Q9NNZ6 103 aa9.41□□□□□ -0.9
NEDD9-204ENST00000448183 BRPF3Q9ULD4 1205 aa9.4□□□□□ -0.9
NEDD9-204ENST00000448183 APPP05067 770 aa9.4□□□□□ -0.9
NEDD9-204ENST00000448183 STAC3Q96MF2 364 aa9.4□□□□□ -0.9
NEDD9-204ENST00000448183 NOM1Q5C9Z4 860 aaKnown RBP9.4□□□□□ -0.91
NEDD9-204ENST00000448183 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.39□□□□□ -0.91
NEDD9-204ENST00000448183 CDR1P51861 262 aa9.39□□□□□ -0.91
NEDD9-204ENST00000448183 RUFY1Q96T51 708 aa9.39□□□□□ -0.91
NEDD9-204ENST00000448183 HMGN5P82970 282 aaKnown RBP9.39□□□□□ -0.91
NEDD9-204ENST00000448183 CAVIN1Q6NZI2 390 aaKnown RBP9.39□□□□□ -0.91
NEDD9-204ENST00000448183 TTC5Q8N0Z6 440 aa9.39□□□□□ -0.91
NEDD9-204ENST00000448183 NAT10Q9H0A0 1025 aaKnown RBP9.39□□□□□ -0.91
NEDD9-204ENST00000448183 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms