RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 PDCL3Q9H2J4 239 aa24.83■■□□□ 1.57
HMGA1-205ENST00000447654 TPM2P07951 284 aa24.83■■□□□ 1.56
HMGA1-205ENST00000447654 TMC1Q8TDI8 760 aa24.83■■□□□ 1.56
HMGA1-205ENST00000447654 ARAP3Q8WWN8 1544 aa24.82■■□□□ 1.56
HMGA1-205ENST00000447654 RGL3Q3MIN7 710 aa24.82■■□□□ 1.56
HMGA1-205ENST00000447654 KDM2BQ8NHM5 1336 aa24.82■■□□□ 1.56
HMGA1-205ENST00000447654 SPAG9O60271 1321 aaKnown RBP24.81■■□□□ 1.56
HMGA1-205ENST00000447654 CENPQQ7L2Z9 268 aaPredicted RBP24.81■■□□□ 1.56
HMGA1-205ENST00000447654 CARD11Q9BXL7 1154 aa24.81■■□□□ 1.56
HMGA1-205ENST00000447654 ZFYVE16Q7Z3T8 1539 aa24.81■■□□□ 1.56
HMGA1-205ENST00000447654 ASXL2Q76L83 1435 aa24.81■■□□□ 1.56
HMGA1-205ENST00000447654 POGKQ9P215 609 aa24.81■■□□□ 1.56
HMGA1-205ENST00000447654 INSRP06213 1382 aa24.8■■□□□ 1.56
HMGA1-205ENST00000447654 C8orf34Q49A92 452 aa24.8■■□□□ 1.56
HMGA1-205ENST00000447654 FANCAO15360 1455 aa24.79■■□□□ 1.56
HMGA1-205ENST00000447654 ABCA9Q8IUA7 1624 aa24.79■■□□□ 1.56
HMGA1-205ENST00000447654 FSD2A1L4K1 749 aa24.78■■□□□ 1.56
HMGA1-205ENST00000447654 ZMYM4Q5VZL5 1548 aa24.77■■□□□ 1.56
HMGA1-205ENST00000447654 A2MP01023 1474 aa24.76■■□□□ 1.55
HMGA1-205ENST00000447654 POLR3GLQ9BT43 218 aa24.76■■□□□ 1.55
HMGA1-205ENST00000447654 PRAG1Q86YV5 1406 aa24.75■■□□□ 1.55
HMGA1-205ENST00000447654 ST20-MTHFSA0A0A6YYL1 179 aa24.75■■□□□ 1.55
HMGA1-205ENST00000447654 RTEL1-TNFRSF6BF6WH68 1400 aa24.75■■□□□ 1.55
HMGA1-205ENST00000447654 GOLGA6L3A6NEY3 463 aa24.74■■□□□ 1.55
HMGA1-205ENST00000447654 VIRMAQ69YN4 1812 aaKnown RBP24.74■■□□□ 1.55
HMGA1-205ENST00000447654 NBPF1Q3BBV0 1214 aa24.73■■□□□ 1.55
HMGA1-205ENST00000447654 XRCC6P12956 609 aaKnown RBP eCLIP24.72■■□□□ 1.55
HMGA1-205ENST00000447654 BECN1Q14457 450 aa24.72■■□□□ 1.55
HMGA1-205ENST00000447654 ATP10AO60312 1499 aa24.72■■□□□ 1.55
HMGA1-205ENST00000447654 SCAPERQ9BY12 1400 aa24.71■■□□□ 1.55
HMGA1-205ENST00000447654 RALBP1Q15311 655 aa24.71■■□□□ 1.55
HMGA1-205ENST00000447654 ISY1Q9ULR0 285 aaKnown RBP24.71■■□□□ 1.55
HMGA1-205ENST00000447654 TRPM1Q7Z4N2 1603 aa24.7■■□□□ 1.55
HMGA1-205ENST00000447654 ADGRL1O94910 1474 aa24.7■■□□□ 1.55
HMGA1-205ENST00000447654 MYBBP1AQ9BQG0 1328 aaKnown RBP24.7■■□□□ 1.54
HMGA1-205ENST00000447654 INO80Q9ULG1 1556 aaPredicted RBP24.69■■□□□ 1.54
HMGA1-205ENST00000447654 ATP7AQ04656 1500 aa24.69■■□□□ 1.54
HMGA1-205ENST00000447654 E9PCH4 1651 aa24.68■■□□□ 1.54
HMGA1-205ENST00000447654 CNGB1Q14028 1251 aaPredicted RBP24.68■■□□□ 1.54
HMGA1-205ENST00000447654 CRBNQ96SW2 442 aa24.68■■□□□ 1.54
HMGA1-205ENST00000447654 PRDM4Q9UKN5 801 aa24.65■■□□□ 1.54
HMGA1-205ENST00000447654 MRE11P49959 708 aa24.64■■□□□ 1.54
HMGA1-205ENST00000447654 RBM10P98175 930 aaKnown RBP24.64■■□□□ 1.54
HMGA1-205ENST00000447654 DEPDC5O75140 1603 aa24.64■■□□□ 1.53
HMGA1-205ENST00000447654 AAMPQ13685 434 aa24.64■■□□□ 1.53
HMGA1-205ENST00000447654 ESPNB1AK53 854 aa24.61■■□□□ 1.53
HMGA1-205ENST00000447654 MAP7D2Q96T17 732 aa24.61■■□□□ 1.53
HMGA1-205ENST00000447654 KIF3BO15066 747 aa24.6■■□□□ 1.53
HMGA1-205ENST00000447654 GPRASP1Q5JY77 1395 aa24.6■■□□□ 1.53
HMGA1-205ENST00000447654 TERF1P54274 439 aa24.59■■□□□ 1.53
HMGA1-205ENST00000447654 NPM1P06748 294 aaKnown RBP eCLIP24.58■■□□□ 1.53
HMGA1-205ENST00000447654 ANTXR1Q9H6X2 564 aa24.58■■□□□ 1.53
HMGA1-205ENST00000447654 MROH1Q8NDA8 1641 aa24.57■■□□□ 1.52
HMGA1-205ENST00000447654 KIDINS220Q9ULH0 1771 aa24.57■■□□□ 1.52
HMGA1-205ENST00000447654 VWDEQ8N2E2 1590 aa24.57■■□□□ 1.52
HMGA1-205ENST00000447654 PTPRTO14522 1441 aa24.56■■□□□ 1.52
HMGA1-205ENST00000447654 FGD1P98174 961 aa24.56■■□□□ 1.52
HMGA1-205ENST00000447654 TRPM2O94759 1503 aa24.55■■□□□ 1.52
HMGA1-205ENST00000447654 SKAP1Q86WV1 359 aa24.54■■□□□ 1.52
HMGA1-205ENST00000447654 MYH16Q9H6N6 1097 aa24.54■■□□□ 1.52
HMGA1-205ENST00000447654 CLTCL1P53675 1640 aa24.54■■□□□ 1.52
HMGA1-205ENST00000447654 CD109Q6YHK3 1445 aa24.54■■□□□ 1.52
HMGA1-205ENST00000447654 PRDM15P57071 1507 aaPredicted RBP24.53■■□□□ 1.52
HMGA1-205ENST00000447654 SPHKAPQ2M3C7 1700 aa24.53■■□□□ 1.52
HMGA1-205ENST00000447654 TET3O43151 1660 aa24.53■■□□□ 1.52
HMGA1-205ENST00000447654 NLRP13Q86W25 1043 aa24.53■■□□□ 1.52
HMGA1-205ENST00000447654 USP19O94966 1318 aa24.53■■□□□ 1.52
HMGA1-205ENST00000447654 TESK2Q96S53 571 aa24.52■■□□□ 1.52
HMGA1-205ENST00000447654 BLMP54132 1417 aaPredicted RBP24.52■■□□□ 1.52
HMGA1-205ENST00000447654 PLIN1O60240 522 aa24.5■■□□□ 1.51
HMGA1-205ENST00000447654 ZNF518AQ6AHZ1 1483 aa24.49■■□□□ 1.51
HMGA1-205ENST00000447654 DISP3Q9P2K9 1392 aa24.49■■□□□ 1.51
HMGA1-205ENST00000447654 LAMC1P11047 1609 aa24.49■■□□□ 1.51
HMGA1-205ENST00000447654 PANK2Q9BZ23 570 aa24.49■■□□□ 1.51
HMGA1-205ENST00000447654 EIF2AK4Q9P2K8 1649 aaKnown RBP24.48■■□□□ 1.51
HMGA1-205ENST00000447654 UGGT1Q9NYU2 1555 aa24.48■■□□□ 1.51
HMGA1-205ENST00000447654 CEP152O94986 1710 aa24.48■■□□□ 1.51
HMGA1-205ENST00000447654 MADDQ8WXG6 1647 aa24.47■■□□□ 1.51
HMGA1-205ENST00000447654 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.47■■□□□ 1.51
HMGA1-205ENST00000447654 KANK1Q14678 1352 aa24.47■■□□□ 1.51
HMGA1-205ENST00000447654 MCM4P33991 863 aa24.46■■□□□ 1.51
HMGA1-205ENST00000447654 RNF17Q9BXT8 1623 aaKnown RBP24.46■■□□□ 1.51
HMGA1-205ENST00000447654 SMAP1Q8IYB5 467 aaPredicted RBP24.45■■□□□ 1.5
HMGA1-205ENST00000447654 ZMYM3Q14202 1370 aa24.45■■□□□ 1.5
HMGA1-205ENST00000447654 PARD3Q8TEW0 1356 aa24.45■■□□□ 1.5
HMGA1-205ENST00000447654 POGZQ7Z3K3 1410 aa24.45■■□□□ 1.5
HMGA1-205ENST00000447654 TRIM44Q96DX7 344 aaPredicted RBP24.44■■□□□ 1.5
HMGA1-205ENST00000447654 GRPEL1Q9HAV7 217 aa24.44■■□□□ 1.5
HMGA1-205ENST00000447654 EIF3AQ14152 1382 aaKnown RBP24.44■■□□□ 1.5
HMGA1-205ENST00000447654 COL17A1Q9UMD9 1497 aaPredicted RBP24.43■■□□□ 1.5
HMGA1-205ENST00000447654 MTERF4Q7Z6M4 381 aaKnown RBP24.43■■□□□ 1.5
HMGA1-205ENST00000447654 CDCA7LQ96GN5 454 aa24.43■■□□□ 1.5
HMGA1-205ENST00000447654 FRMPD1Q5SYB0 1578 aa24.43■■□□□ 1.5
HMGA1-205ENST00000447654 NLRP1Q9C000 1473 aa24.42■■□□□ 1.5
HMGA1-205ENST00000447654 MAPK8IP3Q9UPT6 1336 aa24.41■■□□□ 1.5
HMGA1-205ENST00000447654 AEBP2Q6ZN18 517 aaPredicted RBP24.4■■□□□ 1.5
HMGA1-205ENST00000447654 PPRC1Q5VV67 1664 aaKnown RBP24.4■■□□□ 1.5
HMGA1-205ENST00000447654 ERBB4Q15303 1308 aa24.4■■□□□ 1.5
HMGA1-205ENST00000447654 PER1O15534 1290 aaPredicted RBP24.4■■□□□ 1.5
HMGA1-205ENST00000447654 RAPGEF3O95398 923 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms