RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 PTPRTO14522 1441 aa25.09■■□□□ 1.61
SDCBP-204ENST00000447182 NPC1L1Q9UHC9 1359 aa25.09■■□□□ 1.61
SDCBP-204ENST00000447182 ASXL1Q8IXJ9 1541 aa25.09■■□□□ 1.61
SDCBP-204ENST00000447182 PLEKHH1Q9ULM0 1364 aa25.09■■□□□ 1.61
SDCBP-204ENST00000447182 DUSP27Q5VZP5 1158 aa25.09■■□□□ 1.61
SDCBP-204ENST00000447182 KDM2BQ8NHM5 1336 aa25.08■■□□□ 1.61
SDCBP-204ENST00000447182 WDR43Q15061 677 aaKnown RBP eCLIP25.07■■□□□ 1.6
SDCBP-204ENST00000447182 USP35Q9P2H5 1018 aa25.07■■□□□ 1.6
SDCBP-204ENST00000447182 RTEL1-TNFRSF6BF6WH68 1400 aa25.07■■□□□ 1.6
SDCBP-204ENST00000447182 ERCC6L2Q5T890 1561 aa25.07■■□□□ 1.6
SDCBP-204ENST00000447182 TRAPPC8Q9Y2L5 1435 aa25.07■■□□□ 1.6
SDCBP-204ENST00000447182 MYOM1P52179 1685 aa25.05■■□□□ 1.6
SDCBP-204ENST00000447182 ZCCHC11Q5TAX3 1644 aaKnown RBP25.05■■□□□ 1.6
SDCBP-204ENST00000447182 DEPDC5O75140 1603 aa25.04■■□□□ 1.6
SDCBP-204ENST00000447182 KIAA1210Q9ULL0 1709 aa25.04■■□□□ 1.6
SDCBP-204ENST00000447182 C20orf194Q5TEA3 1177 aa25.04■■□□□ 1.6
SDCBP-204ENST00000447182 CLTCL1P53675 1640 aa25.03■■□□□ 1.6
SDCBP-204ENST00000447182 UHRF1BP1LA0JNW5 1464 aa25.03■■□□□ 1.6
SDCBP-204ENST00000447182 GOLGA2Q08379 1002 aa25.03■■□□□ 1.6
SDCBP-204ENST00000447182 CENPQQ7L2Z9 268 aaPredicted RBP25.03■■□□□ 1.6
SDCBP-204ENST00000447182 DDRGK1Q96HY6 314 aa25.03■■□□□ 1.6
SDCBP-204ENST00000447182 NEURL4Q96JN8 1562 aa25.02■■□□□ 1.6
SDCBP-204ENST00000447182 ARAP3Q8WWN8 1544 aa25.02■■□□□ 1.6
SDCBP-204ENST00000447182 ZFYVE16Q7Z3T8 1539 aa25.01■■□□□ 1.59
SDCBP-204ENST00000447182 TET3O43151 1660 aa25.01■■□□□ 1.59
SDCBP-204ENST00000447182 PPM1GO15355 546 aaPredicted RBP25■■□□□ 1.59
SDCBP-204ENST00000447182 EIF3AQ14152 1382 aaKnown RBP25■■□□□ 1.59
SDCBP-204ENST00000447182 GOLGA6L2Q8N9W4 650 aaPredicted RBP25■■□□□ 1.59
SDCBP-204ENST00000447182 SLFN5Q08AF3 891 aa24.98■■□□□ 1.59
SDCBP-204ENST00000447182 TRMT2AQ8IZ69 625 aaKnown RBP24.98■■□□□ 1.59
SDCBP-204ENST00000447182 KDM5AP29375 1690 aaKnown RBP24.98■■□□□ 1.59
SDCBP-204ENST00000447182 SPAG9O60271 1321 aaKnown RBP24.98■■□□□ 1.59
SDCBP-204ENST00000447182 VWDEQ8N2E2 1590 aa24.96■■□□□ 1.59
SDCBP-204ENST00000447182 SLC24A1O60721 1099 aa24.95■■□□□ 1.59
SDCBP-204ENST00000447182 NEFMP07197 916 aa24.95■■□□□ 1.58
SDCBP-204ENST00000447182 SKAP1Q86WV1 359 aa24.95■■□□□ 1.58
SDCBP-204ENST00000447182 LAS1LQ9Y4W2 734 aaKnown RBP24.94■■□□□ 1.58
SDCBP-204ENST00000447182 NKTRP30414 1462 aaKnown RBP24.9■■□□□ 1.58
SDCBP-204ENST00000447182 NGEFQ8N5V2 710 aa24.9■■□□□ 1.58
SDCBP-204ENST00000447182 MYOM2P54296 1465 aa24.89■■□□□ 1.58
SDCBP-204ENST00000447182 KANK1Q14678 1352 aa24.89■■□□□ 1.58
SDCBP-204ENST00000447182 FAM161AQ3B820 660 aa24.89■■□□□ 1.57
SDCBP-204ENST00000447182 MAP3K4Q9Y6R4 1608 aa24.88■■□□□ 1.57
SDCBP-204ENST00000447182 INO80Q9ULG1 1556 aaPredicted RBP24.88■■□□□ 1.57
SDCBP-204ENST00000447182 AFAP1Q8N556 730 aa24.88■■□□□ 1.57
SDCBP-204ENST00000447182 ERVK-7P63135 1459 aa24.87■■□□□ 1.57
SDCBP-204ENST00000447182 ATP7AQ04656 1500 aa24.86■■□□□ 1.57
SDCBP-204ENST00000447182 C8orf34Q49A92 452 aa24.85■■□□□ 1.57
SDCBP-204ENST00000447182 ABCA6Q8N139 1617 aa24.84■■□□□ 1.57
SDCBP-204ENST00000447182 E9PSI1 815 aa24.84■■□□□ 1.57
SDCBP-204ENST00000447182 APAF1O14727 1248 aa24.83■■□□□ 1.57
SDCBP-204ENST00000447182 CCDC146Q8IYE0 955 aa24.83■■□□□ 1.57
SDCBP-204ENST00000447182 MYO3AQ8NEV4 1616 aa24.82■■□□□ 1.56
SDCBP-204ENST00000447182 SPINK5Q9NQ38 1064 aaPredicted RBP24.82■■□□□ 1.56
SDCBP-204ENST00000447182 ABCA9Q8IUA7 1624 aa24.81■■□□□ 1.56
SDCBP-204ENST00000447182 IFT172Q9UG01 1749 aa24.81■■□□□ 1.56
SDCBP-204ENST00000447182 MROH1Q8NDA8 1641 aa24.8■■□□□ 1.56
SDCBP-204ENST00000447182 SBNO2Q9Y2G9 1366 aa24.8■■□□□ 1.56
SDCBP-204ENST00000447182 KIF1BO60333 1816 aa24.8■■□□□ 1.56
SDCBP-204ENST00000447182 NRXN1Q9ULB1 1477 aa24.79■■□□□ 1.56
SDCBP-204ENST00000447182 POLR3AO14802 1390 aaPredicted RBP24.77■■□□□ 1.56
SDCBP-204ENST00000447182 NINLQ9Y2I6 1382 aa24.77■■□□□ 1.56
SDCBP-204ENST00000447182 CFAP70Q5T0N1 1121 aa24.77■■□□□ 1.56
SDCBP-204ENST00000447182 CARD14Q9BXL6 1004 aa24.77■■□□□ 1.56
SDCBP-204ENST00000447182 FANCAO15360 1455 aa24.75■■□□□ 1.55
SDCBP-204ENST00000447182 PDE3AQ14432 1141 aa24.75■■□□□ 1.55
SDCBP-204ENST00000447182 EFCAB6Q5THR3 1501 aa24.75■■□□□ 1.55
SDCBP-204ENST00000447182 ADGRF5Q8IZF2 1346 aa24.75■■□□□ 1.55
SDCBP-204ENST00000447182 KIF3BO15066 747 aa24.74■■□□□ 1.55
SDCBP-204ENST00000447182 BCAR3O75815 825 aa24.74■■□□□ 1.55
SDCBP-204ENST00000447182 DAXXQ9UER7 740 aaPredicted RBP24.74■■□□□ 1.55
SDCBP-204ENST00000447182 UGGT1Q9NYU2 1555 aa24.74■■□□□ 1.55
SDCBP-204ENST00000447182 VIRMAQ69YN4 1812 aaKnown RBP24.74■■□□□ 1.55
SDCBP-204ENST00000447182 CGNL1Q0VF96 1302 aa24.73■■□□□ 1.55
SDCBP-204ENST00000447182 NFKBIBQ15653 356 aa24.73■■□□□ 1.55
SDCBP-204ENST00000447182 SETBP1Q9Y6X0 1596 aa24.72■■□□□ 1.55
SDCBP-204ENST00000447182 MROH2AA6NES4 1674 aa24.7■■□□□ 1.55
SDCBP-204ENST00000447182 RGS3P49796 1198 aa24.7■■□□□ 1.54
SDCBP-204ENST00000447182 DMRT2Q9Y5R5 561 aa24.7■■□□□ 1.54
SDCBP-204ENST00000447182 LMTK2Q8IWU2 1503 aa24.7■■□□□ 1.54
SDCBP-204ENST00000447182 SHPRHQ149N8 1683 aa24.69■■□□□ 1.54
SDCBP-204ENST00000447182 WWC1Q8IX03 1113 aa24.68■■□□□ 1.54
SDCBP-204ENST00000447182 ADGRL1O94910 1474 aa24.68■■□□□ 1.54
SDCBP-204ENST00000447182 SLC4A3P48751 1232 aa24.68■■□□□ 1.54
SDCBP-204ENST00000447182 PPRC1Q5VV67 1664 aaKnown RBP24.67■■□□□ 1.54
SDCBP-204ENST00000447182 CENPJQ9HC77 1338 aaPredicted RBP24.67■■□□□ 1.54
SDCBP-204ENST00000447182 ADGRB3O60242 1522 aa24.66■■□□□ 1.54
SDCBP-204ENST00000447182 GSE1Q14687 1217 aa24.66■■□□□ 1.54
SDCBP-204ENST00000447182 IGHDP01880 384 aa24.65■■□□□ 1.54
SDCBP-204ENST00000447182 ZC3H13Q5T200 1668 aaKnown RBP24.65■■□□□ 1.54
SDCBP-204ENST00000447182 CLUAP1Q96AJ1 413 aa24.64■■□□□ 1.54
SDCBP-204ENST00000447182 USP32Q8NFA0 1604 aa24.63■■□□□ 1.53
SDCBP-204ENST00000447182 MAPK8IP3Q9UPT6 1336 aa24.63■■□□□ 1.53
SDCBP-204ENST00000447182 AAMPQ13685 434 aa24.63■■□□□ 1.53
SDCBP-204ENST00000447182 IQSEC2Q5JU85 1478 aa24.63■■□□□ 1.53
SDCBP-204ENST00000447182 NSD3Q9BZ95 1437 aa24.61■■□□□ 1.53
SDCBP-204ENST00000447182 KIDINS220Q9ULH0 1771 aa24.61■■□□□ 1.53
SDCBP-204ENST00000447182 IL27Q8NEV9 243 aa24.61■■□□□ 1.53
SDCBP-204ENST00000447182 PHF23Q9BUL5 403 aaPredicted RBP24.61■■□□□ 1.53
SDCBP-204ENST00000447182 NOS1P29475 1434 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms