RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 HRCP23327 699 aa25.44■■□□□ 1.66
LIME1-202ENST00000444951 SOCS7O14512 581 aa25.43■■□□□ 1.66
LIME1-202ENST00000444951 IQGAP3Q86VI3 1631 aa25.42■■□□□ 1.66
LIME1-202ENST00000444951 MED1Q15648 1581 aaPredicted RBP25.42■■□□□ 1.66
LIME1-202ENST00000444951 SLC4A1APQ9BWU0 796 aaKnown RBP25.41■■□□□ 1.66
LIME1-202ENST00000444951 TET3O43151 1660 aa25.41■■□□□ 1.66
LIME1-202ENST00000444951 MYO5BQ9ULV0 1848 aa25.4■■□□□ 1.66
LIME1-202ENST00000444951 ACIN1Q9UKV3 1341 aaKnown RBP25.39■■□□□ 1.66
LIME1-202ENST00000444951 SENP3Q9H4L4 574 aaPredicted RBP25.39■■□□□ 1.66
LIME1-202ENST00000444951 MPHOSPH9Q99550 1183 aa25.38■■□□□ 1.65
LIME1-202ENST00000444951 RPRD2Q5VT52 1461 aaKnown RBP25.38■■□□□ 1.65
LIME1-202ENST00000444951 SLC26A8Q96RN1 970 aa25.36■■□□□ 1.65
LIME1-202ENST00000444951 SLC52A1Q9NWF4 448 aa25.35■■□□□ 1.65
LIME1-202ENST00000444951 FOXD1Q16676 465 aa25.33■■□□□ 1.65
LIME1-202ENST00000444951 E9PCH4 1651 aa25.32■■□□□ 1.64
LIME1-202ENST00000444951 ZFYVE9O95405 1425 aa25.32■■□□□ 1.64
LIME1-202ENST00000444951 TMEM131LA2VDJ0 1609 aa25.31■■□□□ 1.64
LIME1-202ENST00000444951 RBM33Q96EV2 1170 aaKnown RBP25.3■■□□□ 1.64
LIME1-202ENST00000444951 TMEM94Q12767 1356 aa25.3■■□□□ 1.64
LIME1-202ENST00000444951 KCNA6P17658 529 aa25.29■■□□□ 1.64
LIME1-202ENST00000444951 NWD1Q149M9 1564 aa25.28■■□□□ 1.64
LIME1-202ENST00000444951 RIMS2Q9UQ26 1411 aa25.27■■□□□ 1.64
LIME1-202ENST00000444951 DHX57Q6P158 1386 aaKnown RBP25.26■■□□□ 1.63
LIME1-202ENST00000444951 PLEKHG1Q9ULL1 1385 aa25.24■■□□□ 1.63
LIME1-202ENST00000444951 PROSER2Q86WR7 435 aaPredicted RBP25.22■■□□□ 1.63
LIME1-202ENST00000444951 BCANQ96GW7 911 aa25.22■■□□□ 1.63
LIME1-202ENST00000444951 NKTRP30414 1462 aaKnown RBP25.21■■□□□ 1.63
LIME1-202ENST00000444951 CHD2O14647 1828 aaKnown RBP25.21■■□□□ 1.63
LIME1-202ENST00000444951 CHGAP10645 457 aaKnown RBP25.2■■□□□ 1.62
LIME1-202ENST00000444951 NUTM2DQ5VT03 806 aaPredicted RBP25.19■■□□□ 1.62
LIME1-202ENST00000444951 FAM135BQ49AJ0 1406 aa25.19■■□□□ 1.62
LIME1-202ENST00000444951 PPP1R15AO75807 674 aaPredicted RBP25.18■■□□□ 1.62
LIME1-202ENST00000444951 CCER1Q8TC90 406 aaPredicted RBP25.18■■□□□ 1.62
LIME1-202ENST00000444951 ROBO1Q9Y6N7 1651 aa25.17■■□□□ 1.62
LIME1-202ENST00000444951 SPHKAPQ2M3C7 1700 aa25.15■■□□□ 1.62
LIME1-202ENST00000444951 ADAMTS13Q76LX8 1427 aa25.15■■□□□ 1.62
LIME1-202ENST00000444951 PHF23Q9BUL5 403 aaPredicted RBP25.14■■□□□ 1.62
LIME1-202ENST00000444951 TBX22Q9Y458 520 aa25.11■■□□□ 1.61
LIME1-202ENST00000444951 ANKRD30BQ9BXX2 1392 aa25.1■■□□□ 1.61
LIME1-202ENST00000444951 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.1■■□□□ 1.61
LIME1-202ENST00000444951 MSH6P52701 1360 aa25.09■■□□□ 1.61
LIME1-202ENST00000444951 HDGFP51858 240 aaKnown RBP25.09■■□□□ 1.61
LIME1-202ENST00000444951 TRPM2O94759 1503 aa25.08■■□□□ 1.61
LIME1-202ENST00000444951 DIP2AQ14689 1571 aa25.08■■□□□ 1.61
LIME1-202ENST00000444951 RGS17Q9UGC6 210 aaPredicted RBP25.06■■□□□ 1.6
LIME1-202ENST00000444951 CLTCL1P53675 1640 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 NRXN3Q9Y4C0 1643 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 CCDC144AA2RUR9 1427 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 PTPRUQ92729 1446 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 SIN3AQ96ST3 1273 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 SLAIN2Q9P270 581 aa25.03■■□□□ 1.6
LIME1-202ENST00000444951 PHLPP1O60346 1717 aa25.01■■□□□ 1.59
LIME1-202ENST00000444951 SIPA1L2Q9P2F8 1722 aaPredicted RBP25■■□□□ 1.59
LIME1-202ENST00000444951 PIK3R4Q99570 1358 aa25■■□□□ 1.59
LIME1-202ENST00000444951 NCOA3Q9Y6Q9 1424 aa24.98■■□□□ 1.59
LIME1-202ENST00000444951 SETBP1Q9Y6X0 1596 aa24.97■■□□□ 1.59
LIME1-202ENST00000444951 XRN1Q8IZH2 1706 aaKnown RBP24.96■■□□□ 1.59
LIME1-202ENST00000444951 AMOTL2Q9Y2J4 779 aa24.96■■□□□ 1.59
LIME1-202ENST00000444951 COL16A1Q07092 1604 aaPredicted RBP24.95■■□□□ 1.58
LIME1-202ENST00000444951 RGL3Q3MIN7 710 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 C14orf37Q86TY3 774 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 NEXMIFQ5QGS0 1516 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 KIF1BO60333 1816 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 ZNF326Q5BKZ1 582 aaKnown RBP24.94■■□□□ 1.58
LIME1-202ENST00000444951 CLSPNQ9HAW4 1339 aa24.92■■□□□ 1.58
LIME1-202ENST00000444951 METP08581 1390 aa24.92■■□□□ 1.58
LIME1-202ENST00000444951 C19orf44Q9H6X5 657 aa24.91■■□□□ 1.58
LIME1-202ENST00000444951 POTEAQ6S8J7 498 aa24.9■■□□□ 1.58
LIME1-202ENST00000444951 JCADQ9P266 1359 aa24.89■■□□□ 1.57
LIME1-202ENST00000444951 AHDC1Q5TGY3 1603 aaPredicted RBP24.87■■□□□ 1.57
LIME1-202ENST00000444951 ATF3P18847 181 aa24.87■■□□□ 1.57
LIME1-202ENST00000444951 CADPS2Q86UW7 1296 aa24.87■■□□□ 1.57
LIME1-202ENST00000444951 SPATA31E1Q6ZUB1 1445 aa24.86■■□□□ 1.57
LIME1-202ENST00000444951 LRP6O75581 1613 aa24.84■■□□□ 1.57
LIME1-202ENST00000444951 TONSLQ96HA7 1378 aa24.83■■□□□ 1.57
LIME1-202ENST00000444951 BRINP3Q76B58 766 aa24.83■■□□□ 1.57
LIME1-202ENST00000444951 SETD1AO15047 1707 aaKnown RBP24.82■■□□□ 1.56
LIME1-202ENST00000444951 DCCP43146 1447 aa24.82■■□□□ 1.56
LIME1-202ENST00000444951 KDM2AQ9Y2K7 1162 aa24.81■■□□□ 1.56
LIME1-202ENST00000444951 NALCNQ8IZF0 1738 aa24.81■■□□□ 1.56
LIME1-202ENST00000444951 MST1RQ04912 1400 aa24.8■■□□□ 1.56
LIME1-202ENST00000444951 SHPRHQ149N8 1683 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 DCAF11Q8TEB1 546 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 L3MBTL2Q969R5 705 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 ASXL1Q8IXJ9 1541 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 ADGRL3Q9HAR2 1447 aa24.77■■□□□ 1.56
LIME1-202ENST00000444951 PPLO60437 1756 aa24.75■■□□□ 1.55
LIME1-202ENST00000444951 RPGRIP1LQ68CZ1 1315 aa24.75■■□□□ 1.55
LIME1-202ENST00000444951 NHSL1Q5SYE7 1610 aa24.75■■□□□ 1.55
LIME1-202ENST00000444951 SPATA31A6Q5VVP1 1343 aa24.73■■□□□ 1.55
LIME1-202ENST00000444951 ROBO2Q9HCK4 1378 aa24.72■■□□□ 1.55
LIME1-202ENST00000444951 DDX17Q92841 729 aaKnown RBP24.72■■□□□ 1.55
LIME1-202ENST00000444951 IFT172Q9UG01 1749 aa24.72■■□□□ 1.55
LIME1-202ENST00000444951 VGFO15240 615 aaPredicted RBP24.7■■□□□ 1.54
LIME1-202ENST00000444951 PTCH1Q13635 1447 aa24.69■■□□□ 1.54
LIME1-202ENST00000444951 ADGRF5Q8IZF2 1346 aa24.68■■□□□ 1.54
LIME1-202ENST00000444951 MEX3CQ5U5Q3 659 aaKnown RBP24.67■■□□□ 1.54
LIME1-202ENST00000444951 PRAG1Q86YV5 1406 aa24.66■■□□□ 1.54
LIME1-202ENST00000444951 C1orf167Q5SNV9 1468 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms