RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 CEBPAP49715 358 aaPredicted RBP17.56■□□□□ 0.4
COL28A1-204ENST00000444268 KTN1Q86UP2 1357 aaKnown RBP17.55■□□□□ 0.4
COL28A1-204ENST00000444268 MADDQ8WXG6 1647 aa17.55■□□□□ 0.4
COL28A1-204ENST00000444268 NEURL4Q96JN8 1562 aa17.55■□□□□ 0.4
COL28A1-204ENST00000444268 HNRNPUQ00839 825 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL28A1-204ENST00000444268 PLPPR3Q6T4P5 718 aa17.55■□□□□ 0.4
COL28A1-204ENST00000444268 MROH2AA6NES4 1674 aa17.54■□□□□ 0.4
COL28A1-204ENST00000444268 MRS2Q9HD23 443 aa17.53■□□□□ 0.4
COL28A1-204ENST00000444268 PIK3C2BO00750 1634 aa17.53■□□□□ 0.4
COL28A1-204ENST00000444268 SPATA31D1Q6ZQQ2 1576 aa17.52■□□□□ 0.4
COL28A1-204ENST00000444268 ST20-MTHFSA0A0A6YYL1 179 aa17.52■□□□□ 0.4
COL28A1-204ENST00000444268 C3P01024 1663 aa17.52■□□□□ 0.39
COL28A1-204ENST00000444268 ADAMTSL3P82987 1691 aa17.52■□□□□ 0.39
COL28A1-204ENST00000444268 RIMS1Q86UR5 1692 aaKnown RBP17.52■□□□□ 0.39
COL28A1-204ENST00000444268 CHGAP10645 457 aaKnown RBP17.51■□□□□ 0.39
COL28A1-204ENST00000444268 IDI1Q13907 227 aa17.51■□□□□ 0.39
COL28A1-204ENST00000444268 KIF1BO60333 1816 aa17.5■□□□□ 0.39
COL28A1-204ENST00000444268 ADGRB3O60242 1522 aa17.48■□□□□ 0.39
COL28A1-204ENST00000444268 POLR3GLQ9BT43 218 aa17.47■□□□□ 0.39
COL28A1-204ENST00000444268 MYO5BQ9ULV0 1848 aa17.45■□□□□ 0.38
COL28A1-204ENST00000444268 ZBED9Q6R2W3 1325 aa17.45■□□□□ 0.38
COL28A1-204ENST00000444268 KIAA1210Q9ULL0 1709 aa17.45■□□□□ 0.38
COL28A1-204ENST00000444268 TNRQ92752 1358 aa17.45■□□□□ 0.38
COL28A1-204ENST00000444268 SLC52A1Q9NWF4 448 aa17.45■□□□□ 0.38
COL28A1-204ENST00000444268 FKBP8Q14318 412 aa17.43■□□□□ 0.38
COL28A1-204ENST00000444268 TMEM131LA2VDJ0 1609 aa17.43■□□□□ 0.38
COL28A1-204ENST00000444268 IQGAP1P46940 1657 aa17.43■□□□□ 0.38
COL28A1-204ENST00000444268 RALBP1Q15311 655 aa17.43■□□□□ 0.38
COL28A1-204ENST00000444268 CCDC184Q52MB2 194 aa17.43■□□□□ 0.38
COL28A1-204ENST00000444268 FAM9BQ8IZU0 186 aa17.42■□□□□ 0.38
COL28A1-204ENST00000444268 IFT172Q9UG01 1749 aa17.41■□□□□ 0.38
COL28A1-204ENST00000444268 NBPF1Q3BBV0 1214 aa17.4■□□□□ 0.38
COL28A1-204ENST00000444268 NUTM2DQ5VT03 806 aaPredicted RBP17.4■□□□□ 0.38
COL28A1-204ENST00000444268 MYOM2P54296 1465 aa17.39■□□□□ 0.37
COL28A1-204ENST00000444268 BRD4O60885 1362 aaPredicted RBP17.39■□□□□ 0.37
COL28A1-204ENST00000444268 TMF1P82094 1093 aa17.39■□□□□ 0.37
COL28A1-204ENST00000444268 MYBBP1AQ9BQG0 1328 aaKnown RBP17.38■□□□□ 0.37
COL28A1-204ENST00000444268 STAG3Q9UJ98 1225 aa17.38■□□□□ 0.37
COL28A1-204ENST00000444268 PPLO60437 1756 aa17.38■□□□□ 0.37
COL28A1-204ENST00000444268 A2ML1A8K2U0 1454 aa17.38■□□□□ 0.37
COL28A1-204ENST00000444268 ADGRF5Q8IZF2 1346 aa17.38■□□□□ 0.37
COL28A1-204ENST00000444268 NEXMIFQ5QGS0 1516 aa17.37■□□□□ 0.37
COL28A1-204ENST00000444268 PTPRMP28827 1452 aa17.37■□□□□ 0.37
COL28A1-204ENST00000444268 ERICH6BQ5W0A0 696 aa17.37■□□□□ 0.37
COL28A1-204ENST00000444268 TESK2Q96S53 571 aa17.37■□□□□ 0.37
COL28A1-204ENST00000444268 SCAF11Q99590 1463 aaKnown RBP17.37■□□□□ 0.37
COL28A1-204ENST00000444268 EIF3AQ14152 1382 aaKnown RBP17.36■□□□□ 0.37
COL28A1-204ENST00000444268 SLC24A1O60721 1099 aa17.36■□□□□ 0.37
COL28A1-204ENST00000444268 SENP3Q9H4L4 574 aaPredicted RBP17.36■□□□□ 0.37
COL28A1-204ENST00000444268 TMC1Q8TDI8 760 aa17.35■□□□□ 0.37
COL28A1-204ENST00000444268 MYO3AQ8NEV4 1616 aa17.35■□□□□ 0.37
COL28A1-204ENST00000444268 UBR1Q8IWV7 1749 aa17.35■□□□□ 0.37
COL28A1-204ENST00000444268 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
COL28A1-204ENST00000444268 KDM4FA0A1W2PPD8 638 aa17.34■□□□□ 0.37
COL28A1-204ENST00000444268 NLRP1Q9C000 1473 aa17.34■□□□□ 0.37
COL28A1-204ENST00000444268 PARD3Q8TEW0 1356 aa17.33■□□□□ 0.36
COL28A1-204ENST00000444268 DISP3Q9P2K9 1392 aa17.32■□□□□ 0.36
COL28A1-204ENST00000444268 RPGRIP1LQ68CZ1 1315 aa17.32■□□□□ 0.36
COL28A1-204ENST00000444268 PNISRQ8TF01 805 aaKnown RBP17.31■□□□□ 0.36
COL28A1-204ENST00000444268 NRXN1Q9ULB1 1477 aa17.31■□□□□ 0.36
COL28A1-204ENST00000444268 LRPPRCP42704 1394 aaKnown RBP17.3■□□□□ 0.36
COL28A1-204ENST00000444268 NLRP13Q86W25 1043 aa17.3■□□□□ 0.36
COL28A1-204ENST00000444268 RIMS2Q9UQ26 1411 aa17.3■□□□□ 0.36
COL28A1-204ENST00000444268 CFAP70Q5T0N1 1121 aa17.29■□□□□ 0.36
COL28A1-204ENST00000444268 SMG6Q86US8 1419 aaKnown RBP17.29■□□□□ 0.36
COL28A1-204ENST00000444268 KDM5AP29375 1690 aaKnown RBP17.28■□□□□ 0.36
COL28A1-204ENST00000444268 PIK3C2GO75747 1445 aa17.28■□□□□ 0.36
COL28A1-204ENST00000444268 ZFYVE9O95405 1425 aa17.28■□□□□ 0.36
COL28A1-204ENST00000444268 CEP170BQ9Y4F5 1589 aaPredicted RBP17.28■□□□□ 0.36
COL28A1-204ENST00000444268 INSRP06213 1382 aa17.28■□□□□ 0.36
COL28A1-204ENST00000444268 PER1O15534 1290 aaPredicted RBP17.28■□□□□ 0.36
COL28A1-204ENST00000444268 BCANQ96GW7 911 aa17.27■□□□□ 0.35
COL28A1-204ENST00000444268 TMEM2Q9UHN6 1383 aa17.26■□□□□ 0.35
COL28A1-204ENST00000444268 SETBP1Q9Y6X0 1596 aa17.26■□□□□ 0.35
COL28A1-204ENST00000444268 VGFO15240 615 aaPredicted RBP17.26■□□□□ 0.35
COL28A1-204ENST00000444268 ZNF142P52746 1687 aaPredicted RBP17.24■□□□□ 0.35
COL28A1-204ENST00000444268 CNGB1Q14028 1251 aaPredicted RBP17.24■□□□□ 0.35
COL28A1-204ENST00000444268 LTKP29376 864 aa17.23■□□□□ 0.35
COL28A1-204ENST00000444268 PANK3Q9H999 370 aa17.23■□□□□ 0.35
COL28A1-204ENST00000444268 SETD1BQ9UPS6 1966 aaKnown RBP17.22■□□□□ 0.35
COL28A1-204ENST00000444268 C14orf93Q9H972 538 aaKnown RBP17.22■□□□□ 0.35
COL28A1-204ENST00000444268 ARHGAP23Q9P227 1491 aa17.21■□□□□ 0.35
COL28A1-204ENST00000444268 SBNO2Q9Y2G9 1366 aa17.21■□□□□ 0.35
COL28A1-204ENST00000444268 TMEM132EQ6IEE7 984 aa17.21■□□□□ 0.35
COL28A1-204ENST00000444268 NUDCQ9Y266 331 aa17.21■□□□□ 0.35
COL28A1-204ENST00000444268 SLIT1O75093 1534 aa17.21■□□□□ 0.34
COL28A1-204ENST00000444268 THEMISQ8N1K5 641 aaPredicted RBP17.2■□□□□ 0.34
COL28A1-204ENST00000444268 MYOM1P52179 1685 aa17.2■□□□□ 0.34
COL28A1-204ENST00000444268 NRXN3Q9Y4C0 1643 aa17.2■□□□□ 0.34
COL28A1-204ENST00000444268 ASXL1Q8IXJ9 1541 aa17.19■□□□□ 0.34
COL28A1-204ENST00000444268 TXNDC2Q86VQ3 553 aa17.19■□□□□ 0.34
COL28A1-204ENST00000444268 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.19■□□□□ 0.34
COL28A1-204ENST00000444268 ADGRB1O14514 1584 aa17.19■□□□□ 0.34
COL28A1-204ENST00000444268 NPC1L1Q9UHC9 1359 aa17.18■□□□□ 0.34
COL28A1-204ENST00000444268 ALKQ9UM73 1620 aa17.18■□□□□ 0.34
COL28A1-204ENST00000444268 KNSTRNQ9Y448 316 aa17.17■□□□□ 0.34
COL28A1-204ENST00000444268 PPP4R2Q9NY27 417 aa17.17■□□□□ 0.34
COL28A1-204ENST00000444268 SETD1AO15047 1707 aaKnown RBP17.16■□□□□ 0.34
COL28A1-204ENST00000444268 PDE3BQ13370 1112 aa17.15■□□□□ 0.34
COL28A1-204ENST00000444268 TSHZ2Q9NRE2 1034 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms