RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 UGGT1Q9NYU2 1555 aa8.25□□□□□ -1.09
VPS50-205ENST00000441602 MLECQ14165 292 aa8.25□□□□□ -1.09
VPS50-205ENST00000441602 KTN1Q86UP2 1357 aaKnown RBP8.25□□□□□ -1.09
VPS50-205ENST00000441602 C11orf95C9JLR9 678 aaPredicted RBP8.24□□□□□ -1.09
VPS50-205ENST00000441602 HDGFP51858 240 aaKnown RBP8.24□□□□□ -1.09
VPS50-205ENST00000441602 ERVK-7P63135 1459 aa8.24□□□□□ -1.09
VPS50-205ENST00000441602 COL17A1Q9UMD9 1497 aaPredicted RBP8.24□□□□□ -1.09
VPS50-205ENST00000441602 ADGRF5Q8IZF2 1346 aa8.23□□□□□ -1.09
VPS50-205ENST00000441602 NRXN1Q9ULB1 1477 aa8.23□□□□□ -1.09
VPS50-205ENST00000441602 ZFYVE9O95405 1425 aa8.23□□□□□ -1.09
VPS50-205ENST00000441602 IDI1Q13907 227 aa8.23□□□□□ -1.09
VPS50-205ENST00000441602 PREX1Q8TCU6 1659 aa8.23□□□□□ -1.09
VPS50-205ENST00000441602 PIK3C2BO00750 1634 aa8.22□□□□□ -1.09
VPS50-205ENST00000441602 CFAP70Q5T0N1 1121 aa8.22□□□□□ -1.09
VPS50-205ENST00000441602 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS50-205ENST00000441602 PRKRIP1Q9H875 184 aaPredicted RBP8.22□□□□□ -1.09
VPS50-205ENST00000441602 SYNMO15061 1565 aa8.22□□□□□ -1.09
VPS50-205ENST00000441602 RALBP1Q15311 655 aa8.22□□□□□ -1.09
VPS50-205ENST00000441602 C14orf93Q9H972 538 aaKnown RBP8.22□□□□□ -1.09
VPS50-205ENST00000441602 SETBP1Q9Y6X0 1596 aa8.22□□□□□ -1.09
VPS50-205ENST00000441602 IFT172Q9UG01 1749 aa8.21□□□□□ -1.09
VPS50-205ENST00000441602 MROH2AA6NES4 1674 aa8.21□□□□□ -1.09
VPS50-205ENST00000441602 IQGAP1P46940 1657 aa8.21□□□□□ -1.09
VPS50-205ENST00000441602 CLTCQ00610 1675 aaKnown RBP8.21□□□□□ -1.1
VPS50-205ENST00000441602 CENPJQ9HC77 1338 aaPredicted RBP8.21□□□□□ -1.1
VPS50-205ENST00000441602 MRS2Q9HD23 443 aa8.2□□□□□ -1.1
VPS50-205ENST00000441602 PIK3C2GO75747 1445 aa8.2□□□□□ -1.1
VPS50-205ENST00000441602 PPLO60437 1756 aa8.2□□□□□ -1.1
VPS50-205ENST00000441602 TESK2Q96S53 571 aa8.2□□□□□ -1.1
VPS50-205ENST00000441602 CFAP65Q6ZU64 1925 aaKnown RBP8.2□□□□□ -1.1
VPS50-205ENST00000441602 SPATA31D1Q6ZQQ2 1576 aa8.2□□□□□ -1.1
VPS50-205ENST00000441602 TNRQ92752 1358 aa8.19□□□□□ -1.1
VPS50-205ENST00000441602 SBNO2Q9Y2G9 1366 aa8.19□□□□□ -1.1
VPS50-205ENST00000441602 SENP3Q9H4L4 574 aaPredicted RBP8.19□□□□□ -1.1
VPS50-205ENST00000441602 ZMYM3Q14202 1370 aa8.19□□□□□ -1.1
VPS50-205ENST00000441602 FBXO31Q5XUX0 539 aaPredicted RBP8.19□□□□□ -1.1
VPS50-205ENST00000441602 SIGLEC1Q9BZZ2 1709 aa8.18□□□□□ -1.1
VPS50-205ENST00000441602 NEXMIFQ5QGS0 1516 aa8.18□□□□□ -1.1
VPS50-205ENST00000441602 DISP3Q9P2K9 1392 aa8.18□□□□□ -1.1
VPS50-205ENST00000441602 KNSTRNQ9Y448 316 aa8.18□□□□□ -1.1
VPS50-205ENST00000441602 DNAJC5Q9H3Z4 198 aa8.17□□□□□ -1.1
VPS50-205ENST00000441602 MYBBP1AQ9BQG0 1328 aaKnown RBP8.17□□□□□ -1.1
VPS50-205ENST00000441602 TMC1Q8TDI8 760 aa8.17□□□□□ -1.1
VPS50-205ENST00000441602 TMEM131LA2VDJ0 1609 aa8.17□□□□□ -1.1
VPS50-205ENST00000441602 RIMS2Q9UQ26 1411 aa8.16□□□□□ -1.1
VPS50-205ENST00000441602 PUS7Q96PZ0 661 aaKnown RBP8.16□□□□□ -1.1
VPS50-205ENST00000441602 TRAK1Q9UPV9 953 aa8.16□□□□□ -1.1
VPS50-205ENST00000441602 EVC2Q86UK5 1308 aa8.16□□□□□ -1.1
VPS50-205ENST00000441602 PANK3Q9H999 370 aa8.16□□□□□ -1.1
VPS50-205ENST00000441602 BRD4O60885 1362 aaPredicted RBP8.16□□□□□ -1.1
VPS50-205ENST00000441602 NLRP1Q9C000 1473 aa8.15□□□□□ -1.1
VPS50-205ENST00000441602 MYO3AQ8NEV4 1616 aa8.15□□□□□ -1.1
VPS50-205ENST00000441602 KDM5AP29375 1690 aaKnown RBP8.15□□□□□ -1.1
VPS50-205ENST00000441602 POGKQ9P215 609 aa8.15□□□□□ -1.1
VPS50-205ENST00000441602 A2ML1A8K2U0 1454 aa8.15□□□□□ -1.11
VPS50-205ENST00000441602 HNRNPUQ00839 825 aaKnown RBP eCLIP8.15□□□□□ -1.11
VPS50-205ENST00000441602 NLRP13Q86W25 1043 aa8.15□□□□□ -1.11
VPS50-205ENST00000441602 CNGB1Q14028 1251 aaPredicted RBP8.14□□□□□ -1.11
VPS50-205ENST00000441602 NUTM2DQ5VT03 806 aaPredicted RBP8.14□□□□□ -1.11
VPS50-205ENST00000441602 BCANQ96GW7 911 aa8.14□□□□□ -1.11
VPS50-205ENST00000441602 TMEM132EQ6IEE7 984 aa8.13□□□□□ -1.11
VPS50-205ENST00000441602 FAM9BQ8IZU0 186 aa8.13□□□□□ -1.11
VPS50-205ENST00000441602 EID1Q9Y6B2 187 aa8.13□□□□□ -1.11
VPS50-205ENST00000441602 ADGRB1O14514 1584 aa8.13□□□□□ -1.11
VPS50-205ENST00000441602 NEFLP07196 543 aa8.13□□□□□ -1.11
VPS50-205ENST00000441602 NPC1L1Q9UHC9 1359 aa8.12□□□□□ -1.11
VPS50-205ENST00000441602 NINLQ9Y2I6 1382 aa8.12□□□□□ -1.11
VPS50-205ENST00000441602 GTF3C3Q9Y5Q9 886 aa8.12□□□□□ -1.11
VPS50-205ENST00000441602 PARD3Q8TEW0 1356 aa8.12□□□□□ -1.11
VPS50-205ENST00000441602 STK26Q9P289 416 aa8.12□□□□□ -1.11
VPS50-205ENST00000441602 YTHDC2Q9H6S0 1430 aaKnown RBP8.12□□□□□ -1.11
VPS50-205ENST00000441602 LRPPRCP42704 1394 aaKnown RBP8.11□□□□□ -1.11
VPS50-205ENST00000441602 ASXL1Q8IXJ9 1541 aa8.11□□□□□ -1.11
VPS50-205ENST00000441602 ATAD2Q6PL18 1390 aa8.11□□□□□ -1.11
VPS50-205ENST00000441602 PER1O15534 1290 aaPredicted RBP8.1□□□□□ -1.11
VPS50-205ENST00000441602 CC2D1BQ5T0F9 858 aaKnown RBP8.1□□□□□ -1.11
VPS50-205ENST00000441602 THEMISQ8N1K5 641 aaPredicted RBP8.1□□□□□ -1.11
VPS50-205ENST00000441602 QRICH2Q9H0J4 1663 aa8.1□□□□□ -1.11
VPS50-205ENST00000441602 ALKQ9UM73 1620 aa8.1□□□□□ -1.11
VPS50-205ENST00000441602 TMEM2Q9UHN6 1383 aa8.1□□□□□ -1.11
VPS50-205ENST00000441602 DLC1Q96QB1 1528 aa8.1□□□□□ -1.11
VPS50-205ENST00000441602 MYO5BQ9ULV0 1848 aa8.09□□□□□ -1.11
VPS50-205ENST00000441602 SRPK2P78362 688 aaKnown RBP8.09□□□□□ -1.11
VPS50-205ENST00000441602 SIRT1Q96EB6 747 aa8.09□□□□□ -1.11
VPS50-205ENST00000441602 SCAF1Q9H7N4 1312 aaKnown RBP8.09□□□□□ -1.11
VPS50-205ENST00000441602 FER1L4A9Z1Z3 1794 aa8.09□□□□□ -1.11
VPS50-205ENST00000441602 TERF2IPQ9NYB0 399 aa8.09□□□□□ -1.11
VPS50-205ENST00000441602 ABCC11Q96J66 1382 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 PRAM1Q96QH2 718 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 CGNL1Q0VF96 1302 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 ZBED9Q6R2W3 1325 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 PELP1Q8IZL8 1130 aaKnown RBP8.08□□□□□ -1.12
VPS50-205ENST00000441602 INSRP06213 1382 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 PLEKHG1Q9ULL1 1385 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 ARHGEF28Q8N1W1 1705 aaKnown RBP8.08□□□□□ -1.12
VPS50-205ENST00000441602 WDR43Q15061 677 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS50-205ENST00000441602 HDGFL2Q7Z4V5 671 aaPredicted RBP8.08□□□□□ -1.12
VPS50-205ENST00000441602 TXNDC2Q86VQ3 553 aa8.08□□□□□ -1.12
VPS50-205ENST00000441602 NSD2O96028 1365 aa8.07□□□□□ -1.12
VPS50-205ENST00000441602 PLPPR3Q6T4P5 718 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms